| Definition | Wolbachia sp. wRi, complete genome. |
|---|---|
| Accession | NC_012416 |
| Length | 1,445,873 |
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The map label for this gene is ppdK [H]
Identifier: 225630310
GI number: 225630310
Start: 561673
End: 564438
Strand: Reverse
Name: ppdK [H]
Synonym: WRi_005300
Alternate gene names: 225630310
Gene position: 564438-561673 (Counterclockwise)
Preceding gene: 225630312
Following gene: 225630309
Centisome position: 39.04
GC content: 38.72
Gene sequence:
>2766_bases ATGTACAATGTGTTTATCAGTGAAAATCCGGAGAAAATGATGGGGGAAAAGTTAATACATTACTTTAGCCAGGGTAAATG CGAAGGCAATGCAGAAATGAAAAATCTGCTGGGAGGAAAGGGGGCAAATTTAGCAGAAATGTGCAATGTTGGCATTCCTG TTCCACCTGGTTTCACAATTTCCACCTCTGCTTGCAAAGTCTATTATCAAGACAATAGATCTTCTGTCATCCAAGTATCT GATTACTCGGATCCAGAAAAAAATGTGGTCACGCACTGGAATGACATATGTAGTGGAATTAAAAACTACATGACGATGCT CGAAAATGACATCGGTTGTAAATTTGGGGATTTAAATAATCCCTTATTAGTTTCCATACGCTCTGGTAGTGTTAGTTCAA TGCCGGGCATGCTTGATACTATTTTAAATGTTGGTCTAAATGATGAAACCGTTGTTGGGCTTGCAAAAAAAAGTGGCGAA CGTTTTGCTTACGATAGCTACTGCCGTTTCATCATGATGTACTCCAATGTTGTACTACAGCTTGATCATCACCTATTTCA AGATGTTATTGATAATGAGCAGCAAAAGAGTGGAGCAAAAAGCTTAGCTGATCTTGATGTTGATGTTTTAAAGAGAATTG TTAACGATTTTAAAAAGATAGTATATGAAAAAACTGAGAAACATTTCCCGCAGAACGTTGAAGAGCAATTGTTAAACTCA GTTAATGCAGTATTTGCCTCTTGGAAAAATGATAGGGCTGTTTCCTATAGAAGAATACATAATATTCCTGAAAACCTTGG AACAGCGGTCAACGTGCAAGCAATGGTTTTTGGTAATTTAAATGATAATTCTGCAACTGGTGTGATATTTACACGAAATC CTTCAACTGGAGAAAAAAAGCTTTTTGGTGAGTTTTTGGTTAATGCTCAGGGTGAGGATGTGGTTTCTGGTGTTTATACT CCTATGCCAATTGACGGAGAGCAAAAAAACACCATGGAGAAGTTGCTGCCAAGTGTCTACCGAGAATTATGCGTGGTATG TGAAAAACTTGAAAGGCATTATAAAGACATGCAGGATATCGAATTTACTGTACAGGACGGTAAATTATGGATTTTGCAGA CTAGGTCTGGCAAACGCACGGCTGAAGCTGCTATTCGCATAATAGTTGATATGGTAAACGAAGGAACGATTACAAAAGAA GAAGGAATATTGAGAATTGATCCAAAAACTTTTGACAATTTATTGCATCCAGTTCTTGACGTTAAGAGTGACCAAAAAGT AATAGGGAAGGGGCTACCTGCTTCTCCAGGTGTTGCTTCTGGATATGTAGTGTTTAGTGCAAGTGATGCTGAAAAAGCTG CAGAGCAGGGTAAAAAAGTGATTTTAGTAAGGTCAGAAACGAGTCCTGAAGATATTAATGGAATGAATGCTGCAAGTGGC ATAGTAACAGCACGGGGAGGGATGACCTCGCATGCTGCTGTTGTAACCCGTGGAATGGGTAAGCCATGCATTTGCAGTGT GAGTGGACTTTATATCGATAAAGATGGAACTTTCTTTTCTGTAGGGGATACAAAAGTAAATAAAGGTGAACCAATTACCA TCAACGGAGGAACAGGGGAGGTTATGCTTGGCATTCTCCCTACAATTTCACCTGAATTATCGCAAGAATTCAAAACGGTA ATCAACTGGATAGATGAAATCAAAACGGTCAAAGTGAGAGCGAACGCTGATACTCCAAAAGACGCAAAAATTGCAAAAGA ATTCGGTGCAGAAGGTATAGGCTTATGTCGCACAGAACATATGTTTTTCGCTAGTGATAGAATCGAATTCATTCAAAAGT TGATAATAGCTGACGATGAAAATGAAAGGGCAAATGCGCTCATTAAACTAGAAGAAATGCAAAAGTCTGATTTCAAAGAA ATATTTTCTATTATGGAGGGCAGGGAAGTCACTATACGGTTGCTTGATCCACCTTTGCATGAATTTTTACCCAATGATCA GTCTACTATAGAAAAAATTGCCAAATCACTTAGTAAGTCAGTTGAGTCAGTAAAAAATAAAATAGCACAGTTATCAGAAA AGAACCCAATGCTTGGCCATCGAGGTTGTAGACTTGCCATTTCTCATCCTGAAATATATAGCATGCAGATTAGGGCAATA CTTAGTGCTGCAAGTGAATTAAAGAAAGAAAAGAAGATAGAAGTGGAGCCTGAAATCATGATTCCTTTTATCATGAGCGA GAAAGAATTTATTCTGATATGCGAGCTAGCAAAGAAAGAATCCTCTGTTATCTCACAGACGCAGATTCCAGCGTCACGCG CTGGAATGACATCAGACAAGGCGTACTCAATTGGAACAATGATAGAGCTACCACGAGCGGCACTGATTGCTGATAAGTTA GCAAAACATGCAGAGTTCTTTAGTTTTGGCACTAATGATTTAACGCAAACAACCATGGGACTTTCAAGAGATGATTCAGT TAATTTCCTCGATTCCTATAAGAAAAACAACATATTTGACAATGATCCATTTGAAGTGCTGGACATCGAAGGGGTAGGGG AGTTAATCAAGATGGCCATTGAAAGAGGCAAAAAAACCCGAAAAGAAATAAAACTGGGTATATGTGGAGAGCATGGAGCA GATCCAAAATCTATAGAGTTTCTCATCGAATCAGGGGTGGATTATGTTTCATGCTCACCCTATAGAGTACCGATTGCAAA GTTAGTGGCAGCACAGTTTAGTGTTAGATCTAAATTTGCTAGGTAA
Upstream 100 bases:
>100_bases TTGTTAACTTTACTGATGTTGCCAGAGGGAACGTTGTTGCAAAATTTTGTAAAATTTATTATCCTAAGGTTTCAAGTCCT CACAGGTTTATTGGAACTAT
Downstream 100 bases:
>100_bases GTATAGTGGCAGTGTTGGCTACTCATATGGTTTGAGGTATCCGTTCAGCGGAGTGGCAGAATAAGGTAGACAAGGTGATC TAAAAAGATAATCATAGAGC
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 921; Mature: 921
Protein sequence:
>921_residues MYNVFISENPEKMMGEKLIHYFSQGKCEGNAEMKNLLGGKGANLAEMCNVGIPVPPGFTISTSACKVYYQDNRSSVIQVS DYSDPEKNVVTHWNDICSGIKNYMTMLENDIGCKFGDLNNPLLVSIRSGSVSSMPGMLDTILNVGLNDETVVGLAKKSGE RFAYDSYCRFIMMYSNVVLQLDHHLFQDVIDNEQQKSGAKSLADLDVDVLKRIVNDFKKIVYEKTEKHFPQNVEEQLLNS VNAVFASWKNDRAVSYRRIHNIPENLGTAVNVQAMVFGNLNDNSATGVIFTRNPSTGEKKLFGEFLVNAQGEDVVSGVYT PMPIDGEQKNTMEKLLPSVYRELCVVCEKLERHYKDMQDIEFTVQDGKLWILQTRSGKRTAEAAIRIIVDMVNEGTITKE EGILRIDPKTFDNLLHPVLDVKSDQKVIGKGLPASPGVASGYVVFSASDAEKAAEQGKKVILVRSETSPEDINGMNAASG IVTARGGMTSHAAVVTRGMGKPCICSVSGLYIDKDGTFFSVGDTKVNKGEPITINGGTGEVMLGILPTISPELSQEFKTV INWIDEIKTVKVRANADTPKDAKIAKEFGAEGIGLCRTEHMFFASDRIEFIQKLIIADDENERANALIKLEEMQKSDFKE IFSIMEGREVTIRLLDPPLHEFLPNDQSTIEKIAKSLSKSVESVKNKIAQLSEKNPMLGHRGCRLAISHPEIYSMQIRAI LSAASELKKEKKIEVEPEIMIPFIMSEKEFILICELAKKESSVISQTQIPASRAGMTSDKAYSIGTMIELPRAALIADKL AKHAEFFSFGTNDLTQTTMGLSRDDSVNFLDSYKKNNIFDNDPFEVLDIEGVGELIKMAIERGKKTRKEIKLGICGEHGA DPKSIEFLIESGVDYVSCSPYRVPIAKLVAAQFSVRSKFAR
Sequences:
>Translated_921_residues MYNVFISENPEKMMGEKLIHYFSQGKCEGNAEMKNLLGGKGANLAEMCNVGIPVPPGFTISTSACKVYYQDNRSSVIQVS DYSDPEKNVVTHWNDICSGIKNYMTMLENDIGCKFGDLNNPLLVSIRSGSVSSMPGMLDTILNVGLNDETVVGLAKKSGE RFAYDSYCRFIMMYSNVVLQLDHHLFQDVIDNEQQKSGAKSLADLDVDVLKRIVNDFKKIVYEKTEKHFPQNVEEQLLNS VNAVFASWKNDRAVSYRRIHNIPENLGTAVNVQAMVFGNLNDNSATGVIFTRNPSTGEKKLFGEFLVNAQGEDVVSGVYT PMPIDGEQKNTMEKLLPSVYRELCVVCEKLERHYKDMQDIEFTVQDGKLWILQTRSGKRTAEAAIRIIVDMVNEGTITKE EGILRIDPKTFDNLLHPVLDVKSDQKVIGKGLPASPGVASGYVVFSASDAEKAAEQGKKVILVRSETSPEDINGMNAASG IVTARGGMTSHAAVVTRGMGKPCICSVSGLYIDKDGTFFSVGDTKVNKGEPITINGGTGEVMLGILPTISPELSQEFKTV INWIDEIKTVKVRANADTPKDAKIAKEFGAEGIGLCRTEHMFFASDRIEFIQKLIIADDENERANALIKLEEMQKSDFKE IFSIMEGREVTIRLLDPPLHEFLPNDQSTIEKIAKSLSKSVESVKNKIAQLSEKNPMLGHRGCRLAISHPEIYSMQIRAI LSAASELKKEKKIEVEPEIMIPFIMSEKEFILICELAKKESSVISQTQIPASRAGMTSDKAYSIGTMIELPRAALIADKL AKHAEFFSFGTNDLTQTTMGLSRDDSVNFLDSYKKNNIFDNDPFEVLDIEGVGELIKMAIERGKKTRKEIKLGICGEHGA DPKSIEFLIESGVDYVSCSPYRVPIAKLVAAQFSVRSKFAR >Mature_921_residues MYNVFISENPEKMMGEKLIHYFSQGKCEGNAEMKNLLGGKGANLAEMCNVGIPVPPGFTISTSACKVYYQDNRSSVIQVS DYSDPEKNVVTHWNDICSGIKNYMTMLENDIGCKFGDLNNPLLVSIRSGSVSSMPGMLDTILNVGLNDETVVGLAKKSGE RFAYDSYCRFIMMYSNVVLQLDHHLFQDVIDNEQQKSGAKSLADLDVDVLKRIVNDFKKIVYEKTEKHFPQNVEEQLLNS VNAVFASWKNDRAVSYRRIHNIPENLGTAVNVQAMVFGNLNDNSATGVIFTRNPSTGEKKLFGEFLVNAQGEDVVSGVYT PMPIDGEQKNTMEKLLPSVYRELCVVCEKLERHYKDMQDIEFTVQDGKLWILQTRSGKRTAEAAIRIIVDMVNEGTITKE EGILRIDPKTFDNLLHPVLDVKSDQKVIGKGLPASPGVASGYVVFSASDAEKAAEQGKKVILVRSETSPEDINGMNAASG IVTARGGMTSHAAVVTRGMGKPCICSVSGLYIDKDGTFFSVGDTKVNKGEPITINGGTGEVMLGILPTISPELSQEFKTV INWIDEIKTVKVRANADTPKDAKIAKEFGAEGIGLCRTEHMFFASDRIEFIQKLIIADDENERANALIKLEEMQKSDFKE IFSIMEGREVTIRLLDPPLHEFLPNDQSTIEKIAKSLSKSVESVKNKIAQLSEKNPMLGHRGCRLAISHPEIYSMQIRAI LSAASELKKEKKIEVEPEIMIPFIMSEKEFILICELAKKESSVISQTQIPASRAGMTSDKAYSIGTMIELPRAALIADKL AKHAEFFSFGTNDLTQTTMGLSRDDSVNFLDSYKKNNIFDNDPFEVLDIEGVGELIKMAIERGKKTRKEIKLGICGEHGA DPKSIEFLIESGVDYVSCSPYRVPIAKLVAAQFSVRSKFAR
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1787994, Length=738, Percent_Identity=25.3387533875339, Blast_Score=122, Evalue=1e-28, Organism=Escherichia coli, GI1788756, Length=454, Percent_Identity=27.3127753303965, Blast_Score=116, Evalue=8e-27, Organism=Escherichia coli, GI48994992, Length=454, Percent_Identity=25.3303964757709, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1789193, Length=484, Percent_Identity=24.1735537190083, Blast_Score=94, Evalue=5e-20, Organism=Escherichia coli, GI1788726, Length=470, Percent_Identity=23.6170212765957, Blast_Score=94, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 101959; Mature: 101959
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYNVFISENPEKMMGEKLIHYFSQGKCEGNAEMKNLLGGKGANLAEMCNVGIPVPPGFTI CEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCEE STSACKVYYQDNRSSVIQVSDYSDPEKNVVTHWNDICSGIKNYMTMLENDIGCKFGDLNN ECCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC PLLVSIRSGSVSSMPGMLDTILNVGLNDETVVGLAKKSGERFAYDSYCRFIMMYSNVVLQ CEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHH LDHHLFQDVIDNEQQKSGAKSLADLDVDVLKRIVNDFKKIVYEKTEKHFPQNVEEQLLNS HHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VNAVFASWKNDRAVSYRRIHNIPENLGTAVNVQAMVFGNLNDNSATGVIFTRNPSTGEKK HHHHHHHCCCCCCHHHHHHHCCHHHHCCEEEEEEEEEECCCCCCCEEEEEECCCCCCHHH LFGEFLVNAQGEDVVSGVYTPMPIDGEQKNTMEKLLPSVYRELCVVCEKLERHYKDMQDI HHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC EFTVQDGKLWILQTRSGKRTAEAAIRIIVDMVNEGTITKEEGILRIDPKTFDNLLHPVLD EEEEECCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEECCCCEEEECCHHHHHHHHHHHC VKSDQKVIGKGLPASPGVASGYVVFSASDAEKAAEQGKKVILVRSETSPEDINGMNAASG CCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC IVTARGGMTSHAAVVTRGMGKPCICSVSGLYIDKDGTFFSVGDTKVNKGEPITINGGTGE EEEECCCCCHHHHHHHCCCCCCEEEEEEEEEEECCCCEEEECCCCCCCCCEEEEECCCCC VMLGILPTISPELSQEFKTVINWIDEIKTVKVRANADTPKDAKIAKEFGAEGIGLCRTEH EEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCCCCEEEECC MFFASDRIEFIQKLIIADDENERANALIKLEEMQKSDFKEIFSIMEGREVTIRLLDPPLH EEEHHHHHHHHHHHHHCCCCCCCHHHEEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCHH EFLPNDQSTIEKIAKSLSKSVESVKNKIAQLSEKNPMLGHRGCRLAISHPEIYSMQIRAI HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHH LSAASELKKEKKIEVEPEIMIPFIMSEKEFILICELAKKESSVISQTQIPASRAGMTSDK HHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHCCCHHHCCCCCCC AYSIGTMIELPRAALIADKLAKHAEFFSFGTNDLTQTTMGLSRDDSVNFLDSYKKNNIFD CEECHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHCCCCCC NDPFEVLDIEGVGELIKMAIERGKKTRKEIKLGICGEHGADPKSIEFLIESGVDYVSCSP CCCCEEEEECCHHHHHHHHHHHCHHHHHHEEEEECCCCCCCHHHHHHHHHCCCCEEECCC YRVPIAKLVAAQFSVRSKFAR CCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MYNVFISENPEKMMGEKLIHYFSQGKCEGNAEMKNLLGGKGANLAEMCNVGIPVPPGFTI CEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCEE STSACKVYYQDNRSSVIQVSDYSDPEKNVVTHWNDICSGIKNYMTMLENDIGCKFGDLNN ECCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC PLLVSIRSGSVSSMPGMLDTILNVGLNDETVVGLAKKSGERFAYDSYCRFIMMYSNVVLQ CEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHH LDHHLFQDVIDNEQQKSGAKSLADLDVDVLKRIVNDFKKIVYEKTEKHFPQNVEEQLLNS HHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VNAVFASWKNDRAVSYRRIHNIPENLGTAVNVQAMVFGNLNDNSATGVIFTRNPSTGEKK HHHHHHHCCCCCCHHHHHHHCCHHHHCCEEEEEEEEEECCCCCCCEEEEEECCCCCCHHH LFGEFLVNAQGEDVVSGVYTPMPIDGEQKNTMEKLLPSVYRELCVVCEKLERHYKDMQDI HHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC EFTVQDGKLWILQTRSGKRTAEAAIRIIVDMVNEGTITKEEGILRIDPKTFDNLLHPVLD EEEEECCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEECCCCEEEECCHHHHHHHHHHHC VKSDQKVIGKGLPASPGVASGYVVFSASDAEKAAEQGKKVILVRSETSPEDINGMNAASG CCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC IVTARGGMTSHAAVVTRGMGKPCICSVSGLYIDKDGTFFSVGDTKVNKGEPITINGGTGE EEEECCCCCHHHHHHHCCCCCCEEEEEEEEEEECCCCEEEECCCCCCCCCEEEEECCCCC VMLGILPTISPELSQEFKTVINWIDEIKTVKVRANADTPKDAKIAKEFGAEGIGLCRTEH EEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCCCCEEEECC MFFASDRIEFIQKLIIADDENERANALIKLEEMQKSDFKEIFSIMEGREVTIRLLDPPLH EEEHHHHHHHHHHHHHCCCCCCCHHHEEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCHH EFLPNDQSTIEKIAKSLSKSVESVKNKIAQLSEKNPMLGHRGCRLAISHPEIYSMQIRAI HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHH LSAASELKKEKKIEVEPEIMIPFIMSEKEFILICELAKKESSVISQTQIPASRAGMTSDK HHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHCCCHHHCCCCCCC AYSIGTMIELPRAALIADKLAKHAEFFSFGTNDLTQTTMGLSRDDSVNFLDSYKKNNIFD CEECHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHCCCCCC NDPFEVLDIEGVGELIKMAIERGKKTRKEIKLGICGEHGADPKSIEFLIESGVDYVSCSP CCCCEEEEECCHHHHHHHHHHHCHHHHHHEEEEECCCCCCCHHHHHHHHHCCCCEEECCC YRVPIAKLVAAQFSVRSKFAR CCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]