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The map label for this gene is ydhJ [C]

Identifier: 225630232

GI number: 225630232

Start: 475051

End: 476133

Strand: Direct

Name: ydhJ [C]

Synonym: WRi_004410

Alternate gene names: 225630232

Gene position: 475051-476133 (Clockwise)

Preceding gene: 225630231

Following gene: 225630236

Centisome position: 32.86

GC content: 35.27

Gene sequence:

>1083_bases
ATGCAGTTGTTTCTAACAAGATTGGTCAACAAATTCTATTGTTTAAAGGTGAGAAACAAAGTAATCATCATTTCCAGTAT
TGCTTTTATTCTACTGTTTTTTATCAGCAGTGCATTTTTAAAAAAAGATCAGGCGGTTCATAGCGATAATGCAACTAGTA
GCTTTTCAGTAAAAACTCAAGAATGTGCGCCGCAAAACCGCACTATATATTTAAATTTTTCTGGTACAGTAAATCCCTTA
CATAGAGCTAGCCTTGTCTCAAAAATAAGTGGTAAGATTATTGCTATTTATTTACCTGATGGTGAAAAGGTAAAAAGAGA
TGATGTAGTGTTAAAGATAGAAGATTATGACAGGATTGAGCAAGCTCAGAAAGCCAAAGCTTTATTAAAGCAGCGTGAAA
TTGAGTATGATTCCTCTCACAAACTGAATAAAAAAGGCTATGGGGCACAAATACAAGTAGAAGCAGCTTTTACTGCGTTA
CAAAGTGCAAAAGCTGACCTAAAAAGGCTAGAATTGGATTTAGAAAATACTGCAGTCACATCTCCTATAGATGGTTATAT
TGATAAAATCAATGCAAACGAAGGGGATTTTGTTAATGCTGGGCAAAAAATAGCTGACGTGGTTAATTTCGATCAAATTC
TTGTAGTGTTATACGTTTCGGAAAATGAAGTAAATAAAATAGAGCTAGGCAGCACAGCTCAAATTAATTTGCTGGACGGA
AAAGAATTGGCAGGTGAAGTAAGTTTTATTAGTAAAATTGCTGAGCCTAAAACTGGGTCTTATAGGGTAGAAGTAAAGGT
AACTAATAATAAAATGATATCCTTGCAGGGACTAACTGCCAACGTAAGGCTACCTTCAGGCGAAAGATTTGCATATAAAG
TTCCTTCTTCAGCCCTGAGCTTAAGTGACGAGGGTGCTCTTGGAATAAAGATTGTTGATGACAATAATTATGTAGTATTT
GCACCAATAGAAATTGTTGATCATGAGAGCGATGGGGTTTGGATAGTAGCAAATAACGAAGGTAAATCCATAAAGTTAAT
AGTATTGGGCCACCTATTTGTTAAGCCTGGTGATAAGGTTTAA

Upstream 100 bases:

>100_bases
TTACTTATTGTAGGAAAATCTTGTGTTTGTTCTCATATAAAACTATTTATGGAGTGACAATGGTACATGTATTATACTTA
CATTTCTGATTCGAAAATTT

Downstream 100 bases:

>100_bases
GACATAAGATCCTTTGACCTTACCCAGAAAAAGTGGAGAGAAAGTGTGGAATGTTTTTTTACAAAAAGAATGATGCATCA
AATTGTTCTGGAATGCAATA

Product: efflux transporter, RND family, MFP subunit

Products: NA

Alternate protein names: RND Family Efflux Transporter MFP Subunit; Secretion Protein HlyD; HlyD Family Secretion Protein; Membrane-Fusion Protein; Secretion Protein HlyD Family Protein; Acriflavine Resistance Protein A; Component Of Multidrug Efflux System; Multidrug Resistance Protein; Multidrug Efflux Pump MFP Family; RND Efflux Membrane Fusion Protein; RND Multidrug Efflux Membrane Permease; RND Multidrug Efflux Membrane Fusion Protein MexE; Transporter Protein; Transport/Efflux Transmembrane Protein; Efflux Transporter Membrane Fusion Protein; Linker Protein; RND Membrane Fusion Protein; Acriflavine Resistance Protein E; Multidrug Efflux Transporter VexE; HlyD Family Protein Secretion Protein; Cation/Multidrug Efflux System Mebrane-Fusion Component; Efflux System Protein; Periplasmic Component Of Efflux System; RND Membrane Fusion Protein AcrA; Cation Efflux System Protein; Co/Zn/Cd Efflux System Membrane Fusion Protein; Auxiliary Transport Protein MFP Family; Multidrug Efflux System Inner Membrane Protein; Fusaric Acid Resistance Protein FusE; HlyD-Like Secretion Protein; Periplasmic Linker Protein; HlyD Family Multidrug Efflux Protein; Membrane-Fusion Protein AcrA; Efflux Transporter; Hlyd Family Secretion Protein; Membrane Efflux Protein; Efflux System Membrane Fusion Protein; Secretion Protein; Multidrug Efflux Pump; RND Family Transporter; AcrA Protein; RND/Acr Family Transmembrane Transporter; Lipoprotein

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MQLFLTRLVNKFYCLKVRNKVIIISSIAFILLFFISSAFLKKDQAVHSDNATSSFSVKTQECAPQNRTIYLNFSGTVNPL
HRASLVSKISGKIIAIYLPDGEKVKRDDVVLKIEDYDRIEQAQKAKALLKQREIEYDSSHKLNKKGYGAQIQVEAAFTAL
QSAKADLKRLELDLENTAVTSPIDGYIDKINANEGDFVNAGQKIADVVNFDQILVVLYVSENEVNKIELGSTAQINLLDG
KELAGEVSFISKIAEPKTGSYRVEVKVTNNKMISLQGLTANVRLPSGERFAYKVPSSALSLSDEGALGIKIVDDNNYVVF
APIEIVDHESDGVWIVANNEGKSIKLIVLGHLFVKPGDKV

Sequences:

>Translated_360_residues
MQLFLTRLVNKFYCLKVRNKVIIISSIAFILLFFISSAFLKKDQAVHSDNATSSFSVKTQECAPQNRTIYLNFSGTVNPL
HRASLVSKISGKIIAIYLPDGEKVKRDDVVLKIEDYDRIEQAQKAKALLKQREIEYDSSHKLNKKGYGAQIQVEAAFTAL
QSAKADLKRLELDLENTAVTSPIDGYIDKINANEGDFVNAGQKIADVVNFDQILVVLYVSENEVNKIELGSTAQINLLDG
KELAGEVSFISKIAEPKTGSYRVEVKVTNNKMISLQGLTANVRLPSGERFAYKVPSSALSLSDEGALGIKIVDDNNYVVF
APIEIVDHESDGVWIVANNEGKSIKLIVLGHLFVKPGDKV
>Mature_360_residues
MQLFLTRLVNKFYCLKVRNKVIIISSIAFILLFFISSAFLKKDQAVHSDNATSSFSVKTQECAPQNRTIYLNFSGTVNPL
HRASLVSKISGKIIAIYLPDGEKVKRDDVVLKIEDYDRIEQAQKAKALLKQREIEYDSSHKLNKKGYGAQIQVEAAFTAL
QSAKADLKRLELDLENTAVTSPIDGYIDKINANEGDFVNAGQKIADVVNFDQILVVLYVSENEVNKIELGSTAQINLLDG
KELAGEVSFISKIAEPKTGSYRVEVKVTNNKMISLQGLTANVRLPSGERFAYKVPSSALSLSDEGALGIKIVDDNNYVVF
APIEIVDHESDGVWIVANNEGKSIKLIVLGHLFVKPGDKV

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081951, Length=185, Percent_Identity=24.8648648648649, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39753; Mature: 39753

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLFLTRLVNKFYCLKVRNKVIIISSIAFILLFFISSAFLKKDQAVHSDNATSSFSVKTQ
CHHHHHHHHHHEEEEEECCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEH
ECAPQNRTIYLNFSGTVNPLHRASLVSKISGKIIAIYLPDGEKVKRDDVVLKIEDYDRIE
HCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEECCCEEEEECCCHHHH
QAQKAKALLKQREIEYDSSHKLNKKGYGAQIQVEAAFTALQSAKADLKRLELDLENTAVT
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHEEEECCCCEEC
SPIDGYIDKINANEGDFVNAGQKIADVVNFDQILVVLYVSENEVNKIELGSTAQINLLDG
CCCCHHHEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCCEEECCCCEEEEEECC
KELAGEVSFISKIAEPKTGSYRVEVKVTNNKMISLQGLTANVRLPSGERFAYKVPSSALS
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCEEEEECCCCCEEEEECCCHHCC
LSDEGALGIKIVDDNNYVVFAPIEIVDHESDGVWIVANNEGKSIKLIVLGHLFVKPGDKV
CCCCCCEEEEEEECCCEEEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEEEEECCCCCC
>Mature Secondary Structure
MQLFLTRLVNKFYCLKVRNKVIIISSIAFILLFFISSAFLKKDQAVHSDNATSSFSVKTQ
CHHHHHHHHHHEEEEEECCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEH
ECAPQNRTIYLNFSGTVNPLHRASLVSKISGKIIAIYLPDGEKVKRDDVVLKIEDYDRIE
HCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEECCCEEEEECCCHHHH
QAQKAKALLKQREIEYDSSHKLNKKGYGAQIQVEAAFTALQSAKADLKRLELDLENTAVT
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHEEEECCCCEEC
SPIDGYIDKINANEGDFVNAGQKIADVVNFDQILVVLYVSENEVNKIELGSTAQINLLDG
CCCCHHHEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCCEEECCCCEEEEEECC
KELAGEVSFISKIAEPKTGSYRVEVKVTNNKMISLQGLTANVRLPSGERFAYKVPSSALS
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCEEEEECCCCCEEEEECCCHHCC
LSDEGALGIKIVDDNNYVVFAPIEIVDHESDGVWIVANNEGKSIKLIVLGHLFVKPGDKV
CCCCCCEEEEEEECCCEEEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA