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The map label for this gene is rlpA [H]

Identifier: 225630074

GI number: 225630074

Start: 260846

End: 261520

Strand: Reverse

Name: rlpA [H]

Synonym: WRi_002490

Alternate gene names: 225630074

Gene position: 261520-260846 (Counterclockwise)

Preceding gene: 225630078

Following gene: 225630073

Centisome position: 18.09

GC content: 36.15

Gene sequence:

>675_bases
ATGATAAAAAACCTAGCCTTCCTATGTCTAATATTCGTTTTGATGAGTAGTTGCAGTTTTAGCAACAGGTTTAACTGCAC
TGCAGGTCATTATAAAATTGGCAGCAGCTACACAATAAATGGTATAACTTATTATCCAAAAAACTGTAAACACTATGAAG
AGATAGGGATAGCATCGTGGTATGGAATAGAAGATCATGGCACACTTACAGCAAATGGTGAAGCGTTTAACCGTCACTTG
ATCTCTGCAGCGCATAAGACTTTGCCCTTACCCTGCTTTGTTCTTGTCACTAATTTAGAAAATGGAAGAAAGCTTGTTAC
AAGGGTTAACGATAGAGGGCCTTTTATTGAAGGCAGAATAATAGACTTATCAGAAAAAGCAGCTCAAGTCTTAGGATTTC
ATAAATCTGGGCTTGCAAAAGTAAAAGTTCAATACCTAAGAAAGATGTCAGAACAATTGATACAAAATACTCCTCATTAC
AGAAAGCAATATGAAAAAGAAATGCAGAAACGTCATCCGAAACAAGACAGTGCAGAAAGTAAGGGATATGTTGCATTTTT
TAAAAGTGCTCAGGCTGCTAAATCAGCTGCATCAAAGCTTCGCAATCAAGGAATAAAAAATGTTAGATTGCTTTTTAAGA
ACGATCAATATTGCGTGAAAGTGAGTTATAGGTAG

Upstream 100 bases:

>100_bases
TGAGTTTTGTTAATATTTAGCAGTAGATGTTTACTCATTACTAAATTTATTATAGTATAATTTAAAATCCTCATAGTATC
GAACCCTCTTACCGAATACA

Downstream 100 bases:

>100_bases
TGGTGAGTGCAGAATTTGAAAGATTTGGTTAATGTAAGGAACGCTGGCTAACTATTGTAAGTTAAAAATGTGATATAAAA
AAGATATCAACAATTTATAG

Product: rare lipoprotein A, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MIKNLAFLCLIFVLMSSCSFSNRFNCTAGHYKIGSSYTINGITYYPKNCKHYEEIGIASWYGIEDHGTLTANGEAFNRHL
ISAAHKTLPLPCFVLVTNLENGRKLVTRVNDRGPFIEGRIIDLSEKAAQVLGFHKSGLAKVKVQYLRKMSEQLIQNTPHY
RKQYEKEMQKRHPKQDSAESKGYVAFFKSAQAAKSAASKLRNQGIKNVRLLFKNDQYCVKVSYR

Sequences:

>Translated_224_residues
MIKNLAFLCLIFVLMSSCSFSNRFNCTAGHYKIGSSYTINGITYYPKNCKHYEEIGIASWYGIEDHGTLTANGEAFNRHL
ISAAHKTLPLPCFVLVTNLENGRKLVTRVNDRGPFIEGRIIDLSEKAAQVLGFHKSGLAKVKVQYLRKMSEQLIQNTPHY
RKQYEKEMQKRHPKQDSAESKGYVAFFKSAQAAKSAASKLRNQGIKNVRLLFKNDQYCVKVSYR
>Mature_224_residues
MIKNLAFLCLIFVLMSSCSFSNRFNCTAGHYKIGSSYTINGITYYPKNCKHYEEIGIASWYGIEDHGTLTANGEAFNRHL
ISAAHKTLPLPCFVLVTNLENGRKLVTRVNDRGPFIEGRIIDLSEKAAQVLGFHKSGLAKVKVQYLRKMSEQLIQNTPHY
RKQYEKEMQKRHPKQDSAESKGYVAFFKSAQAAKSAASKLRNQGIKNVRLLFKNDQYCVKVSYR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=100, Percent_Identity=41, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR005728
- InterPro:   IPR022438
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 25495; Mature: 25495

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNLAFLCLIFVLMSSCSFSNRFNCTAGHYKIGSSYTINGITYYPKNCKHYEEIGIASW
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCEEEECCEEECCCCCCHHHHCCCEEE
YGIEDHGTLTANGEAFNRHLISAAHKTLPLPCFVLVTNLENGRKLVTRVNDRGPFIEGRI
ECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCEECCEE
IDLSEKAAQVLGFHKSGLAKVKVQYLRKMSEQLIQNTPHYRKQYEKEMQKRHPKQDSAES
ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
KGYVAFFKSAQAAKSAASKLRNQGIKNVRLLFKNDQYCVKVSYR
CCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEECC
>Mature Secondary Structure
MIKNLAFLCLIFVLMSSCSFSNRFNCTAGHYKIGSSYTINGITYYPKNCKHYEEIGIASW
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCEEEECCEEECCCCCCHHHHCCCEEE
YGIEDHGTLTANGEAFNRHLISAAHKTLPLPCFVLVTNLENGRKLVTRVNDRGPFIEGRI
ECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCEECCEE
IDLSEKAAQVLGFHKSGLAKVKVQYLRKMSEQLIQNTPHYRKQYEKEMQKRHPKQDSAES
ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
KGYVAFFKSAQAAKSAASKLRNQGIKNVRLLFKNDQYCVKVSYR
CCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]