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The map label for this gene is recO [H]

Identifier: 225630040

GI number: 225630040

Start: 208649

End: 209371

Strand: Direct

Name: recO [H]

Synonym: WRi_002090

Alternate gene names: 225630040

Gene position: 208649-209371 (Clockwise)

Preceding gene: 225630039

Following gene: 225630045

Centisome position: 14.43

GC content: 33.06

Gene sequence:

>723_bases
ATGAGATGGAAAGATGAAGGCATCATTATAGCTGCTAAAAAATACGGCGATAAAAACTTAATTCTTTCTCTGTTTACAAA
AAATCATGGAAAGCGCAGGGGATTAACTAAGCTAACAAACAATAGCAATTATAAGTTTCAGATAAGTAATCTATTACATG
CAGAATGGAGTGCTAAGTTACCTGAAAATCTAGGTTTTTTTAAGTGCGAATTAATCGAATCTTCATTCCATCATTTCTTT
CAAGATAGGTTAAAAAGCATTACTATTGTTTCTTTCTCCTCTATTTTAGAAAAAGTGCTTCCAGAAAGTGAACCCTGTGC
CGTGCTGTATGACAATTTTCGATATTTCATCGATGTAATTAAACACAACAATCAGTCTTGGCAAAGCCATTATCTTAACT
TAGAGCTTCTGCTTCTTACGCAATTGGGATTCAAGTTAGACTTATCCAAATGCGCTGTAACAGGTGTTAAGGAAAATTTA
CAATTTATTTCTCCAAAAACTGGTAGAGCAGTGTCAAAAAAAGCAGGAGATTATTATGCAGATAAACTCCTACCTTTTCC
ACAAATGTTACATGATGTATACAATAATAACCTACAAAACAGCTACTCATTCCAAGAATTTCAGTTAGGACTGAAAGTTA
CAGGATATTTTTTAAATAAGTATCTATTTTTGCAGTTAAACGTGAAATTTCCAGAGCTGAGAAACCTCATGTTGTCGCTT
TAA

Upstream 100 bases:

>100_bases
CTTGAAACTTTGGAAGCAAACAGTAACGGAGTAAGTGATTTTTATGGATTACACGCTCTAGGTGCACTATCCTATATATC
ATACGGTCAATACACTCTAA

Downstream 100 bases:

>100_bases
TCTTAGTTATCATTTTTTTGAAATCATTTTAGAAATCTATAGCTAACCCAAGCAACACGTCATACCGCGATTCATTCCAT
AACTGTACGAACATTGTGAT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRWKDEGIIIAAKKYGDKNLILSLFTKNHGKRRGLTKLTNNSNYKFQISNLLHAEWSAKLPENLGFFKCELIESSFHHFF
QDRLKSITIVSFSSILEKVLPESEPCAVLYDNFRYFIDVIKHNNQSWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENL
QFISPKTGRAVSKKAGDYYADKLLPFPQMLHDVYNNNLQNSYSFQEFQLGLKVTGYFLNKYLFLQLNVKFPELRNLMLSL

Sequences:

>Translated_240_residues
MRWKDEGIIIAAKKYGDKNLILSLFTKNHGKRRGLTKLTNNSNYKFQISNLLHAEWSAKLPENLGFFKCELIESSFHHFF
QDRLKSITIVSFSSILEKVLPESEPCAVLYDNFRYFIDVIKHNNQSWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENL
QFISPKTGRAVSKKAGDYYADKLLPFPQMLHDVYNNNLQNSYSFQEFQLGLKVTGYFLNKYLFLQLNVKFPELRNLMLSL
>Mature_240_residues
MRWKDEGIIIAAKKYGDKNLILSLFTKNHGKRRGLTKLTNNSNYKFQISNLLHAEWSAKLPENLGFFKCELIESSFHHFF
QDRLKSITIVSFSSILEKVLPESEPCAVLYDNFRYFIDVIKHNNQSWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENL
QFISPKTGRAVSKKAGDYYADKLLPFPQMLHDVYNNNLQNSYSFQEFQLGLKVTGYFLNKYLFLQLNVKFPELRNLMLSL

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 27948; Mature: 27948

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWKDEGIIIAAKKYGDKNLILSLFTKNHGKRRGLTKLTNNSNYKFQISNLLHAEWSAKL
CCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCEECCCCCEEEEECCCHHCHHCCCC
PENLGFFKCELIESSFHHFFQDRLKSITIVSFSSILEKVLPESEPCAVLYDNFRYFIDVI
CCCCCCEEEHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
KHNNQSWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKAGDYYA
HCCCCCHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHCCEEECCCCCCHHHHHCCCHHH
DKLLPFPQMLHDVYNNNLQNSYSFQEFQLGLKVTGYFLNKYLFLQLNVKFPELRNLMLSL
HHCCCHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEECCEEEEEEEECCCHHHHHHHHCC
>Mature Secondary Structure
MRWKDEGIIIAAKKYGDKNLILSLFTKNHGKRRGLTKLTNNSNYKFQISNLLHAEWSAKL
CCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCEECCCCCEEEEECCCHHCHHCCCC
PENLGFFKCELIESSFHHFFQDRLKSITIVSFSSILEKVLPESEPCAVLYDNFRYFIDVI
CCCCCCEEEHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
KHNNQSWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKAGDYYA
HCCCCCHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHCCEEECCCCCCHHHHHCCCHHH
DKLLPFPQMLHDVYNNNLQNSYSFQEFQLGLKVTGYFLNKYLFLQLNVKFPELRNLMLSL
HHCCCHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEECCEEEEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA