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The map label for this gene is nlpD [H]

Identifier: 225629914

GI number: 225629914

Start: 54188

End: 54784

Strand: Direct

Name: nlpD [H]

Synonym: WRi_000470

Alternate gene names: 225629914

Gene position: 54188-54784 (Clockwise)

Preceding gene: 225629913

Following gene: 225629915

Centisome position: 3.75

GC content: 37.86

Gene sequence:

>597_bases
ATGTGGCATATAGCCTCATTTCTTATGTTATTAGCAATATTAATAGGCTGTGGCCTGCAAAAACCCGCACCTGTGCTGCT
TAAAGGCGAAGAATTTTACGGAAAAAGAGATCTGGAATATACAAGAGAGTACCATTTAATTAGGGAGCCTTCAGTGCAAA
AAGAAAGTAGAAAAGCCATCATAAATAGGATATACAGAGATAACAATAATGCACAAAACGTGGAGGTAAATTGTAAATTT
GTAATGCCAGTTAAAGGTTCAGCTACCTCTTCTGATGAAACGTGTAAGGATGGCATAAAAATTGCTGCTCAAAATGGAAC
GAACGTAATTGCCTCCGCACCCGGCAAAGTGATATATGTAGGCAAAGGGCTGAGATGGTATGGAAATTTAATTATAGTGG
AACACAAAGATAATTACATGACTGTGTACTCCTATTTAAAAAACATACATGTTGAAATTGGTGATAAAGTAAAACAAGGT
CAAGTAATTGGATCTGCAGGTAAATCAAGCACACAAGATAAAGACCCGCAGATGTGTTTCACAATACGGCATAATGGCCA
AGCGGTTGATCCTTTGGCGCACACAAACTGTGATTAA

Upstream 100 bases:

>100_bases
GAGAGACTATTTAACTAGTAAAATAAATAGCGAGGAAAGTAACAAGCAGACGTGAAACACTACGTCTCGCTAAAATTTTG
GAGTTTTATGAGAGTTTAAA

Downstream 100 bases:

>100_bases
ATTTGGATTTATATGAAATATGATTTTAAAAACGTCGAAAGGTTTTGTCAAGATAAATGGGATTTTTCTGTAAGCAAGAG
TAGTAAACAAGAGAAATGTT

Product: peptidase, M23/M37 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAIINRIYRDNNNAQNVEVNCKF
VMPVKGSATSSDETCKDGIKIAAQNGTNVIASAPGKVIYVGKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQG
QVIGSAGKSSTQDKDPQMCFTIRHNGQAVDPLAHTNCD

Sequences:

>Translated_198_residues
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAIINRIYRDNNNAQNVEVNCKF
VMPVKGSATSSDETCKDGIKIAAQNGTNVIASAPGKVIYVGKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQG
QVIGSAGKSSTQDKDPQMCFTIRHNGQAVDPLAHTNCD
>Mature_198_residues
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAIINRIYRDNNNAQNVEVNCKF
VMPVKGSATSSDETCKDGIKIAAQNGTNVIASAPGKVIYVGKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQG
QVIGSAGKSSTQDKDPQMCFTIRHNGQAVDPLAHTNCD

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=116, Percent_Identity=38.7931034482759, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789099, Length=107, Percent_Identity=41.1214953271028, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI87082297, Length=94, Percent_Identity=40.4255319148936, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 22115; Mature: 22115

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAI
CCCHHHHHHHHHHHHCCCCCCCCCEEEECHHHCCCCCCHHHHHEEEECCCCCCHHHHHHH
INRIYRDNNNAQNVEVNCKFVMPVKGSATSSDETCKDGIKIAAQNGTNVIASAPGKVIYV
HHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCHHHCCEEEEECCCCEEEEECCCCEEEE
GKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQGQVIGSAGKSSTQDKDPQMCF
ECCCEEECCEEEEEECCCEEEHHHHHHHCEEEECCCCCCCEEEECCCCCCCCCCCCCEEE
TIRHNGQAVDPLAHTNCD
EEECCCCEECCCCCCCCC
>Mature Secondary Structure
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAI
CCCHHHHHHHHHHHHCCCCCCCCCEEEECHHHCCCCCCHHHHHEEEECCCCCCHHHHHHH
INRIYRDNNNAQNVEVNCKFVMPVKGSATSSDETCKDGIKIAAQNGTNVIASAPGKVIYV
HHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCHHHCCEEEEECCCCEEEEECCCCEEEE
GKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQGQVIGSAGKSSTQDKDPQMCF
ECCCEEECCEEEEEECCCEEEHHHHHHHCEEEECCCCCCCEEEECCCCCCCCCCCCCEEE
TIRHNGQAVDPLAHTNCD
EEECCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]