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The map label for this gene is atpD

Identifier: 222526520

GI number: 222526520

Start: 4096706

End: 4098121

Strand: Reverse

Name: atpD

Synonym: Chy400_3287

Alternate gene names: 222526520

Gene position: 4098121-4096706 (Counterclockwise)

Preceding gene: 222526521

Following gene: 222526519

Centisome position: 77.78

GC content: 56.14

Gene sequence:

>1416_bases
ATGCCGGCCAAGGGGGTTATTCAAGAGATTATCGGTGTGGTCATCCGGGCCAAATTCCCGGAAGACGAGGTACCGGAAAT
CTATAATGCAATCGAAATTCCATTAGGGAATGGCGACCGTCTCGTCTGCGAGGTGCAACAGCAGCTCGGCAATGGCGTGG
TAAAGGCGGTTGCAATGGGTTCGACCGATGGTCTGCGCCGTGGTCTTGAGGTCATTGATACCGGTCGGCCTATCGCGGTG
CCGGTCGGCCCGGCTACACTTGGGCGCGTGTTCAATGTGTTGGGAGACCCAATCGATGGTATGGGACCTATCGGTCCAGA
GGTTGAGCGCCGCCCAATTCACCGTGATCCGCCCAGCTTTGAAGAGCAGAATACCCAGGCTCAGATTTTTGAAACCGGGA
TTAAGGTGATCGACCTGATTGCGCCGTTTACCCGTGGTGGCAAGACCGCCATCTTCGGTGGTGCTGGTGTGGGTAAGACG
GTGGTGATCCAGGAGTTGATTGCCAATATCGCTAAAGAGCAGTCGGGGTTCTCAGTCTTCGCCGGCGTAGGTGAGCGATC
CCGCGAGGGAAATGACCTCATCCACGAAATGAAGGAAGCCCGGATCGACGAAAACACCACCGTGTTCGACAAGACGGTGA
TGGTGTTCGGTCAGATGAATGAACCACCAGGTGCTCGCTTGCGGGTCGGTCTGACTGCCCTGACCATGGCCGAGTACTTC
CGCGATGAGGGTCGCGATATTCTGCTCTTTATTGACAATATCTTCCGCTTCGTACAGGCCGGTTCAGAGGTTTCATCACT
CCTCGGTCGTATGCCGTCCCAGGTAGGTTATCAGCCAACGCTGGGCACCGAAATGGGTGAATTGCAAGAGCGGATTACGT
CAACCAAGCGTGGTTCGATCACCTCGATGCAAGCGGTATACGTGCCGGCTGACGACTACACAGACCCGGCACCAGCAACG
GTGTTTAGCCACCTTGACGCAACGATCTCGCTCGAACGCAGCATTGCCGAGCGAGCAATCTTCCCGGCGGTCGATCCGTT
GGCTTCAACGTCACGGATTCTCGATCCCAACATCGTCGGCGAGGAGCACTACCGGGTGGCCCAAGAGGTGAAGCGTGTTT
TGCAGCGCTACAAAGACCTCAAGGATATCATTGCCATTCTCGGTATGGAAGAGCTGAGTGACGAAGACAAGCTGACGGTG
CAGCGCGCCCGCAAGATCGAGCTGTTCTTCTCGCAACCGTTTACGGTGGCCCAGCAGTTTACCGGTCGCCCCGGTAAGTA
TGTGCCGGTGAAGAAGACGGTCGAGAGTTTTGCCCGTCTCCTGAATGGTGAAGGCGATCACATTCCTGAGTCGTTCTTCT
ACATGCAGGGCGATTTCGATGACGTACTGGCCGCTTACGAGGCCAGCCAGAAGTAG

Upstream 100 bases:

>100_bases
GTCGTTTAACAAAGCGCGGCAGGCCGCCATTACTAAAGAGGTCAGCGAAATCGCTTCGGGCGCCGCTGCTCTCACCAGTT
AATGACAAGAGGAGGAGCCG

Downstream 100 bases:

>100_bases
GGTTAAACCGGCGACGGCCAGTCTGTGTTGTCGCCGGTTCACATCTACGGCAGGCAGAAGGAGCAGTCCATGCCCATCCA
TCTGGAGATTGTCACCGCCG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MPAKGVIQEIIGVVIRAKFPEDEVPEIYNAIEIPLGNGDRLVCEVQQQLGNGVVKAVAMGSTDGLRRGLEVIDTGRPIAV
PVGPATLGRVFNVLGDPIDGMGPIGPEVERRPIHRDPPSFEEQNTQAQIFETGIKVIDLIAPFTRGGKTAIFGGAGVGKT
VVIQELIANIAKEQSGFSVFAGVGERSREGNDLIHEMKEARIDENTTVFDKTVMVFGQMNEPPGARLRVGLTALTMAEYF
RDEGRDILLFIDNIFRFVQAGSEVSSLLGRMPSQVGYQPTLGTEMGELQERITSTKRGSITSMQAVYVPADDYTDPAPAT
VFSHLDATISLERSIAERAIFPAVDPLASTSRILDPNIVGEEHYRVAQEVKRVLQRYKDLKDIIAILGMEELSDEDKLTV
QRARKIELFFSQPFTVAQQFTGRPGKYVPVKKTVESFARLLNGEGDHIPESFFYMQGDFDDVLAAYEASQK

Sequences:

>Translated_471_residues
MPAKGVIQEIIGVVIRAKFPEDEVPEIYNAIEIPLGNGDRLVCEVQQQLGNGVVKAVAMGSTDGLRRGLEVIDTGRPIAV
PVGPATLGRVFNVLGDPIDGMGPIGPEVERRPIHRDPPSFEEQNTQAQIFETGIKVIDLIAPFTRGGKTAIFGGAGVGKT
VVIQELIANIAKEQSGFSVFAGVGERSREGNDLIHEMKEARIDENTTVFDKTVMVFGQMNEPPGARLRVGLTALTMAEYF
RDEGRDILLFIDNIFRFVQAGSEVSSLLGRMPSQVGYQPTLGTEMGELQERITSTKRGSITSMQAVYVPADDYTDPAPAT
VFSHLDATISLERSIAERAIFPAVDPLASTSRILDPNIVGEEHYRVAQEVKRVLQRYKDLKDIIAILGMEELSDEDKLTV
QRARKIELFFSQPFTVAQQFTGRPGKYVPVKKTVESFARLLNGEGDHIPESFFYMQGDFDDVLAAYEASQK
>Mature_470_residues
PAKGVIQEIIGVVIRAKFPEDEVPEIYNAIEIPLGNGDRLVCEVQQQLGNGVVKAVAMGSTDGLRRGLEVIDTGRPIAVP
VGPATLGRVFNVLGDPIDGMGPIGPEVERRPIHRDPPSFEEQNTQAQIFETGIKVIDLIAPFTRGGKTAIFGGAGVGKTV
VIQELIANIAKEQSGFSVFAGVGERSREGNDLIHEMKEARIDENTTVFDKTVMVFGQMNEPPGARLRVGLTALTMAEYFR
DEGRDILLFIDNIFRFVQAGSEVSSLLGRMPSQVGYQPTLGTEMGELQERITSTKRGSITSMQAVYVPADDYTDPAPATV
FSHLDATISLERSIAERAIFPAVDPLASTSRILDPNIVGEEHYRVAQEVKRVLQRYKDLKDIIAILGMEELSDEDKLTVQ
RARKIELFFSQPFTVAQQFTGRPGKYVPVKKTVESFARLLNGEGDHIPESFFYMQGDFDDVLAAYEASQK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=463, Percent_Identity=61.7710583153348, Blast_Score=574, Evalue=1e-164,
Organism=Homo sapiens, GI19913424, Length=327, Percent_Identity=29.0519877675841, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI50345984, Length=311, Percent_Identity=27.3311897106109, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4757810, Length=311, Percent_Identity=27.3311897106109, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI19913428, Length=414, Percent_Identity=25.3623188405797, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI19913426, Length=361, Percent_Identity=26.0387811634349, Blast_Score=99, Evalue=7e-21,
Organism=Escherichia coli, GI1790170, Length=461, Percent_Identity=63.9913232104121, Blast_Score=599, Evalue=1e-172,
Organism=Escherichia coli, GI1788251, Length=368, Percent_Identity=29.6195652173913, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI1790172, Length=457, Percent_Identity=26.4770240700219, Blast_Score=122, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI25144756, Length=470, Percent_Identity=60.8510638297872, Blast_Score=575, Evalue=1e-164,
Organism=Caenorhabditis elegans, GI17565854, Length=338, Percent_Identity=28.9940828402367, Blast_Score=140, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17510931, Length=415, Percent_Identity=25.7831325301205, Blast_Score=114, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=407, Percent_Identity=25.5528255528256, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71988080, Length=311, Percent_Identity=27.0096463022508, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=311, Percent_Identity=26.6881028938907, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=272, Percent_Identity=25, Blast_Score=87, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=463, Percent_Identity=63.7149028077754, Blast_Score=586, Evalue=1e-168,
Organism=Saccharomyces cerevisiae, GI6319370, Length=375, Percent_Identity=27.4666666666667, Blast_Score=115, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6319603, Length=424, Percent_Identity=25.7075471698113, Blast_Score=101, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=272, Percent_Identity=26.1029411764706, Blast_Score=100, Evalue=4e-22,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=63.8709677419355, Blast_Score=578, Evalue=1e-165,
Organism=Drosophila melanogaster, GI24638766, Length=461, Percent_Identity=60.3036876355748, Blast_Score=561, Evalue=1e-160,
Organism=Drosophila melanogaster, GI20129479, Length=345, Percent_Identity=28.9855072463768, Blast_Score=146, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24583988, Length=337, Percent_Identity=28.486646884273, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24583986, Length=337, Percent_Identity=28.486646884273, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24583984, Length=337, Percent_Identity=28.486646884273, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24583992, Length=318, Percent_Identity=29.874213836478, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI281361666, Length=417, Percent_Identity=25.8992805755396, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24646341, Length=417, Percent_Identity=25.8992805755396, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI17136796, Length=417, Percent_Identity=25.8992805755396, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24658560, Length=311, Percent_Identity=26.0450160771704, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=47.8260869565217, Blast_Score=81, Evalue=2e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_CHLAA (A9WGS4)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001636629.1
- ProteinModelPortal:   A9WGS4
- SMR:   A9WGS4
- GeneID:   5827515
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_3041
- HOGENOM:   HBG565875
- OMA:   TITFETS
- ProtClustDB:   PRK09280
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 51702; Mature: 51570

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAKGVIQEIIGVVIRAKFPEDEVPEIYNAIEIPLGNGDRLVCEVQQQLGNGVVKAVAMG
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEECCCCCEEHHHHHHHHCCHHHHHHCCC
STDGLRRGLEVIDTGRPIAVPVGPATLGRVFNVLGDPIDGMGPIGPEVERRPIHRDPPSF
CCHHHHHCHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
EEQNTQAQIFETGIKVIDLIAPFTRGGKTAIFGGAGVGKTVVIQELIANIAKEQSGFSVF
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE
AGVGERSREGNDLIHEMKEARIDENTTVFDKTVMVFGQMNEPPGARLRVGLTALTMAEYF
ECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHEEEEECCCCCCCCEEEEHHHHHHHHHHH
RDEGRDILLFIDNIFRFVQAGSEVSSLLGRMPSQVGYQPTLGTEMGELQERITSTKRGSI
HHCCCEEEEEHHHHHHHHHCCHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
TSMQAVYVPADDYTDPAPATVFSHLDATISLERSIAERAIFPAVDPLASTSRILDPNIVG
EEEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
EEHYRVAQEVKRVLQRYKDLKDIIAILGMEELSDEDKLTVQRARKIELFFSQPFTVAQQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHEEEEECCCHHHHHHH
TGRPGKYVPVKKTVESFARLLNGEGDHIPESFFYMQGDFDDVLAAYEASQK
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEECCCHHHHHHHHHCCCC
>Mature Secondary Structure 
PAKGVIQEIIGVVIRAKFPEDEVPEIYNAIEIPLGNGDRLVCEVQQQLGNGVVKAVAMG
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHEEEECCCCCEEHHHHHHHHCCHHHHHHCCC
STDGLRRGLEVIDTGRPIAVPVGPATLGRVFNVLGDPIDGMGPIGPEVERRPIHRDPPSF
CCHHHHHCHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
EEQNTQAQIFETGIKVIDLIAPFTRGGKTAIFGGAGVGKTVVIQELIANIAKEQSGFSVF
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE
AGVGERSREGNDLIHEMKEARIDENTTVFDKTVMVFGQMNEPPGARLRVGLTALTMAEYF
ECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHEEEEECCCCCCCCEEEEHHHHHHHHHHH
RDEGRDILLFIDNIFRFVQAGSEVSSLLGRMPSQVGYQPTLGTEMGELQERITSTKRGSI
HHCCCEEEEEHHHHHHHHHCCHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
TSMQAVYVPADDYTDPAPATVFSHLDATISLERSIAERAIFPAVDPLASTSRILDPNIVG
EEEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
EEHYRVAQEVKRVLQRYKDLKDIIAILGMEELSDEDKLTVQRARKIELFFSQPFTVAQQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHEEEEECCCHHHHHHH
TGRPGKYVPVKKTVESFARLLNGEGDHIPESFFYMQGDFDDVLAAYEASQK
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEECCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA