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The map label for this gene is ocd2 [H]

Identifier: 222526320

GI number: 222526320

Start: 3805585

End: 3806571

Strand: Direct

Name: ocd2 [H]

Synonym: Chy400_3086

Alternate gene names: 222526320

Gene position: 3805585-3806571 (Clockwise)

Preceding gene: 222526319

Following gene: 222526321

Centisome position: 72.23

GC content: 58.56

Gene sequence:

>987_bases
ATGCGTTTTCTTTCAGCAGCCGATATTGCGCAGGCAGTGCCAATGTCAGCCGCGATTGATGCAGTTGCGCAGGCGTTTGG
TATGCTGGCACGCGGTGAGGCTGATATTCCGTTACGAACAGCAATTACAACCCCGGCACAGGCAGCGACGACCTTCTTTA
TGCCGGGTCGTCTCGGTGGCGAAACCCCCGCACTTGGTATCAAGACCGTTTCAGTCTTCCCCCATAATGTCTACCGTGCT
GAACCAACAATTTACGCGCTGGTCACCCTCTTCGATCCGGCCAGTGGTCGCCCAATTGCGGTCCTTGACGGTACCTATCT
TACGGCACTGCGTACCGGTGCTGCGTCGGGGGTGGCGACCCGTCTGCTGGCACGTGAGGATGTCCGCACCCTGGTGGTGT
TCGGTGCTGGTGCCCAGGCATTACCGCAGCTTCAGGCAGTGCTGGCAGTACGACCATCAATCAATAATGTCTGGATTGTG
AACCGTACTCGTGACCGGGCGACATTACTGGCGGCACGCTTACGTGGCGAAGGTTTTCGTGGCGACATTCGCATCGCTAC
CGATCCGACAATGCCACTGGCCGAAGCCGATGTGGTCTGTACCGCAACGAGTAGCCCAAACCCACTCTTCGCCGCCGATC
TGATCCGCCCTGGAACGCATATCAATGCGGTTGGTGCTTATCGCCCCGACATGGCCGAACTGCCCCCCGATCTGGTTGCC
CGTAGTCGGGTCGTGGTCGATCAGCGTCACGCAGCCTGGAGCGAGGCCGGCGATTTGATTCAGGCTCGTGCTGCCGGTCT
GATCGATGAGCAGCACGTGATCGCCGAATTGGGTGATCTCGTCAATGGTACCGTACAGGCTCGAACGACTGCTGATGAGA
TCACCCTCTTCAAGTCGGTTGGTAATGCGGTGCAAGACCTGGCCGTGGCCTCATTGGCTCTGGCCCAGGCGACCACTCTA
GGTCTCGGCGTTGAAGTGACAATCTGA

Upstream 100 bases:

>100_bases
ATTAACTTGACTTGCGAACCGGCATGGATCGTTATCCGTGCCGGTTTTGTCGTATGATAAGTGCGTGAAGTGTTTTGCCG
GCACGTTGAAGGAGGGATGA

Downstream 100 bases:

>100_bases
GCTTTTGTCATCAGGTGAGGGAGCATTATTCATCAAAATGTCACGCCGATTCCGTACAACCATCATGACAATTGCGATGG
ATAATGCTTCATTGAAGGCA

Product: Ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MRFLSAADIAQAVPMSAAIDAVAQAFGMLARGEADIPLRTAITTPAQAATTFFMPGRLGGETPALGIKTVSVFPHNVYRA
EPTIYALVTLFDPASGRPIAVLDGTYLTALRTGAASGVATRLLAREDVRTLVVFGAGAQALPQLQAVLAVRPSINNVWIV
NRTRDRATLLAARLRGEGFRGDIRIATDPTMPLAEADVVCTATSSPNPLFAADLIRPGTHINAVGAYRPDMAELPPDLVA
RSRVVVDQRHAAWSEAGDLIQARAAGLIDEQHVIAELGDLVNGTVQARTTADEITLFKSVGNAVQDLAVASLALAQATTL
GLGVEVTI

Sequences:

>Translated_328_residues
MRFLSAADIAQAVPMSAAIDAVAQAFGMLARGEADIPLRTAITTPAQAATTFFMPGRLGGETPALGIKTVSVFPHNVYRA
EPTIYALVTLFDPASGRPIAVLDGTYLTALRTGAASGVATRLLAREDVRTLVVFGAGAQALPQLQAVLAVRPSINNVWIV
NRTRDRATLLAARLRGEGFRGDIRIATDPTMPLAEADVVCTATSSPNPLFAADLIRPGTHINAVGAYRPDMAELPPDLVA
RSRVVVDQRHAAWSEAGDLIQARAAGLIDEQHVIAELGDLVNGTVQARTTADEITLFKSVGNAVQDLAVASLALAQATTL
GLGVEVTI
>Mature_328_residues
MRFLSAADIAQAVPMSAAIDAVAQAFGMLARGEADIPLRTAITTPAQAATTFFMPGRLGGETPALGIKTVSVFPHNVYRA
EPTIYALVTLFDPASGRPIAVLDGTYLTALRTGAASGVATRLLAREDVRTLVVFGAGAQALPQLQAVLAVRPSINNVWIV
NRTRDRATLLAARLRGEGFRGDIRIATDPTMPLAEADVVCTATSSPNPLFAADLIRPGTHINAVGAYRPDMAELPPDLVA
RSRVVVDQRHAAWSEAGDLIQARAAGLIDEQHVIAELGDLVNGTVQARTTADEITLFKSVGNAVQDLAVASLALAQATTL
GLGVEVTI

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=315, Percent_Identity=32.0634920634921, Blast_Score=145, Evalue=6e-35,
Organism=Homo sapiens, GI62241008, Length=277, Percent_Identity=33.5740072202166, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24642678, Length=274, Percent_Identity=31.3868613138686, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 34373; Mature: 34373

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLSAADIAQAVPMSAAIDAVAQAFGMLARGEADIPLRTAITTPAQAATTFFMPGRLGG
CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHEEEEECCCCCC
ETPALGIKTVSVFPHNVYRAEPTIYALVTLFDPASGRPIAVLDGTYLTALRTGAASGVAT
CCCCCEEEEEEECCCCEEECCCCEEEEEEEECCCCCCEEEEECCCEEEHHHHCCCHHHHH
RLLAREDVRTLVVFGAGAQALPQLQAVLAVRPSINNVWIVNRTRDRATLLAARLRGEGFR
HHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCC
GDIRIATDPTMPLAEADVVCTATSSPNPLFAADLIRPGTHINAVGAYRPDMAELPPDLVA
CCEEEECCCCCCCCCCCEEEEECCCCCCEEEHHHCCCCCCEEEECCCCCCHHHCCHHHHH
RSRVVVDQRHAAWSEAGDLIQARAAGLIDEQHVIAELGDLVNGTVQARTTADEITLFKSV
CCHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH
GNAVQDLAVASLALAQATTLGLGVEVTI
HHHHHHHHHHHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure
MRFLSAADIAQAVPMSAAIDAVAQAFGMLARGEADIPLRTAITTPAQAATTFFMPGRLGG
CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHEEEEECCCCCC
ETPALGIKTVSVFPHNVYRAEPTIYALVTLFDPASGRPIAVLDGTYLTALRTGAASGVAT
CCCCCEEEEEEECCCCEEECCCCEEEEEEEECCCCCCEEEEECCCEEEHHHHCCCHHHHH
RLLAREDVRTLVVFGAGAQALPQLQAVLAVRPSINNVWIVNRTRDRATLLAARLRGEGFR
HHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCC
GDIRIATDPTMPLAEADVVCTATSSPNPLFAADLIRPGTHINAVGAYRPDMAELPPDLVA
CCEEEECCCCCCCCCCCEEEEECCCCCCEEEHHHCCCCCCEEEECCCCCCHHHCCHHHHH
RSRVVVDQRHAAWSEAGDLIQARAAGLIDEQHVIAELGDLVNGTVQARTTADEITLFKSV
CCHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH
GNAVQDLAVASLALAQATTLGLGVEVTI
HHHHHHHHHHHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]