Click here to switch to the map view.

The map label for this gene is hypD [H]

Identifier: 222526225

GI number: 222526225

Start: 3692340

End: 3693455

Strand: Reverse

Name: hypD [H]

Synonym: Chy400_2987

Alternate gene names: 222526225

Gene position: 3693455-3692340 (Counterclockwise)

Preceding gene: 222526226

Following gene: 222526224

Centisome position: 70.1

GC content: 59.86

Gene sequence:

>1116_bases
ATGAAGTATCTTGATGAATTTCGTGATCCTGAACTGGCCCGCCGCATGTTCGATCAGATTCGACGCATCACCACCCGCCC
CTGGGCGATTATGGAGGTTTGCGGCGGTCAAACGCACTCAATCATTCGCAACGGCATCGACCAGCTCTTGCCGCCAGAGA
TTGAACTGATCCACGGCCCCGGCTGCCCGGTCTGCGTCACACCGCTGGAGATTATCGATAAGGCGTTAGCGATTGCAGCA
CGGCCCGGTGTCATCTTCTGTTCATTCGGCGACATGCTGCGCGTGCCCGGTAGTCGCAAAGACCTCTTTCGGGTCAAGAG
CGAAGGTGGCGATGTGCGTGTTGTCTACTCGCCGCTCGATGCCGTCAAACTGGCCCAACAAAACCCCGACCGTGAAGTCG
TCTTTTTTGCCATCGGCTTCGAGACAACTGCCCCCGCCAATGCGATGGCCGTCTACCAGGCGGCCCGCCTCGGCCTGAAG
AACTTCTCGCTGCTGGTATCTCACGTGCTGGTGCCACCGGCGATCCGGGCGATTATGGAATCGCCTTCTAACCGCGTCCA
GGGATTTCTGGCCGCCGGTCATGTCTGTAGTGTGATGGGAACGGATGAGTACCGCCCACTCGTCGAACAGTACCGCGTAC
CGATTGTGGTCACCGGCTTCGAGCCACTCGATGTGTTAGAGGGTATTCGCCGCGTCATTCTTCAGCTCGAACAGGGCAAA
GCAGAGCTTGACAATGCCTATGAGCGGGCCGTGCGCCCAGAAGGCAACGTGGCCGCCAAACAGATGCTGGCCGACGTTTT
CACCGTCACCGACCGGGCATGGCGCGGGATCGGGGTTATTCCCCGCAGTGGCTGGAAGTTGAGCGAGCGGTACGCCGCTT
TCGATGCTGAACAGCGCTTCGATGTCAGCGACATCCAGACCACCGAGTCGGCACTATGCCGGAGTGGTGAGGTATTGCAG
GGACGCCTGAAACCCAACCAGTGCCCGGCATTTGGCAAGGAGTGTACGCCCCGCACCCCGCTCGGCGCGACCATGGTCTC
AAGTGAAGGCGCCTGCGCGGCGTACTACCAGTACGGACGCTTCATTCCGGTTAACCAGGTTGGCGTGACCGGCTAA

Upstream 100 bases:

>100_bases
ATCACCCGTCTCGACGAGGAGTCAGCCCGCGAAACGCTGGCCCTCTTCCAATCGCTCGGTGTGCTCGAAGAGGAGCTAAA
TCCGACAGCGGAGGATCAGC

Downstream 100 bases:

>100_bases
CGCTACCGGCATCACGATACGCTGATCGCCATAGTACACAGAAACCATAGCGGACAATGCCTATGCACGAACCACTCGAC
TTCAGCGGCTGGACATGCCC

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKYLDEFRDPELARRMFDQIRRITTRPWAIMEVCGGQTHSIIRNGIDQLLPPEIELIHGPGCPVCVTPLEIIDKALAIAA
RPGVIFCSFGDMLRVPGSRKDLFRVKSEGGDVRVVYSPLDAVKLAQQNPDREVVFFAIGFETTAPANAMAVYQAARLGLK
NFSLLVSHVLVPPAIRAIMESPSNRVQGFLAAGHVCSVMGTDEYRPLVEQYRVPIVVTGFEPLDVLEGIRRVILQLEQGK
AELDNAYERAVRPEGNVAAKQMLADVFTVTDRAWRGIGVIPRSGWKLSERYAAFDAEQRFDVSDIQTTESALCRSGEVLQ
GRLKPNQCPAFGKECTPRTPLGATMVSSEGACAAYYQYGRFIPVNQVGVTG

Sequences:

>Translated_371_residues
MKYLDEFRDPELARRMFDQIRRITTRPWAIMEVCGGQTHSIIRNGIDQLLPPEIELIHGPGCPVCVTPLEIIDKALAIAA
RPGVIFCSFGDMLRVPGSRKDLFRVKSEGGDVRVVYSPLDAVKLAQQNPDREVVFFAIGFETTAPANAMAVYQAARLGLK
NFSLLVSHVLVPPAIRAIMESPSNRVQGFLAAGHVCSVMGTDEYRPLVEQYRVPIVVTGFEPLDVLEGIRRVILQLEQGK
AELDNAYERAVRPEGNVAAKQMLADVFTVTDRAWRGIGVIPRSGWKLSERYAAFDAEQRFDVSDIQTTESALCRSGEVLQ
GRLKPNQCPAFGKECTPRTPLGATMVSSEGACAAYYQYGRFIPVNQVGVTG
>Mature_371_residues
MKYLDEFRDPELARRMFDQIRRITTRPWAIMEVCGGQTHSIIRNGIDQLLPPEIELIHGPGCPVCVTPLEIIDKALAIAA
RPGVIFCSFGDMLRVPGSRKDLFRVKSEGGDVRVVYSPLDAVKLAQQNPDREVVFFAIGFETTAPANAMAVYQAARLGLK
NFSLLVSHVLVPPAIRAIMESPSNRVQGFLAAGHVCSVMGTDEYRPLVEQYRVPIVVTGFEPLDVLEGIRRVILQLEQGK
AELDNAYERAVRPEGNVAAKQMLADVFTVTDRAWRGIGVIPRSGWKLSERYAAFDAEQRFDVSDIQTTESALCRSGEVLQ
GRLKPNQCPAFGKECTPRTPLGATMVSSEGACAAYYQYGRFIPVNQVGVTG

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=366, Percent_Identity=48.3606557377049, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40914; Mature: 40914

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLDEFRDPELARRMFDQIRRITTRPWAIMEVCGGQTHSIIRNGIDQLLPPEIELIHGP
CCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECC
GCPVCVTPLEIIDKALAIAARPGVIFCSFGDMLRVPGSRKDLFRVKSEGGDVRVVYSPLD
CCCEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHEEECCCCCEEEEECCHH
AVKLAQQNPDREVVFFAIGFETTAPANAMAVYQAARLGLKNFSLLVSHVLVPPAIRAIME
HHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
SPSNRVQGFLAAGHVCSVMGTDEYRPLVEQYRVPIVVTGFEPLDVLEGIRRVILQLEQGK
CCHHHHHHHHHHCCEEEECCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCH
AELDNAYERAVRPEGNVAAKQMLADVFTVTDRAWRGIGVIPRSGWKLSERYAAFDAEQRF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHCC
DVSDIQTTESALCRSGEVLQGRLKPNQCPAFGKECTPRTPLGATMVSSEGACAAYYQYGR
CHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCC
FIPVNQVGVTG
EEECCCCCCCC
>Mature Secondary Structure
MKYLDEFRDPELARRMFDQIRRITTRPWAIMEVCGGQTHSIIRNGIDQLLPPEIELIHGP
CCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECC
GCPVCVTPLEIIDKALAIAARPGVIFCSFGDMLRVPGSRKDLFRVKSEGGDVRVVYSPLD
CCCEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHEEECCCCCEEEEECCHH
AVKLAQQNPDREVVFFAIGFETTAPANAMAVYQAARLGLKNFSLLVSHVLVPPAIRAIME
HHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
SPSNRVQGFLAAGHVCSVMGTDEYRPLVEQYRVPIVVTGFEPLDVLEGIRRVILQLEQGK
CCHHHHHHHHHHCCEEEECCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCH
AELDNAYERAVRPEGNVAAKQMLADVFTVTDRAWRGIGVIPRSGWKLSERYAAFDAEQRF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHCC
DVSDIQTTESALCRSGEVLQGRLKPNQCPAFGKECTPRTPLGATMVSSEGACAAYYQYGR
CHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCC
FIPVNQVGVTG
EEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]