| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is olpB [H]
Identifier: 222526219
GI number: 222526219
Start: 3684004
End: 3686067
Strand: Direct
Name: olpB [H]
Synonym: Chy400_2981
Alternate gene names: 222526219
Gene position: 3684004-3686067 (Clockwise)
Preceding gene: 222526218
Following gene: 222526221
Centisome position: 69.92
GC content: 58.19
Gene sequence:
>2064_bases GTGTCGTCGGCGGGTAAGACACAGACAAATACCGGCCCTGACTATTTGCGCTGGCTGGTAGGAGGAGCGCTTTTGCTGGC GATCCTACCGGTATTCTGTGTCACCCAGGTGATCTTCTGGTGGCTGACCCCATACAATCAGCCGTTTATCAGTGTTAGCG CTGCACGCCTGTTGCGAGCGTATGAACCATTTCCGGCCGATCTGAGCTTCGCGCCACCGGCTGCAGATCTGCCAAATCTG GCAGCGACTGAAGTGGCACGGCGAACTCAAACCCCGACCCAGGCCGCGGCTTTCCCTTCACCGGCACCAATAATTGCTGT GCCACCGCCACCTACTCGCATCGATCCACCAACGCCAACGATTACACCAACACCGACCGCAACAGCCACCTCTAGTCCGG CTGGTGGTGGAGCACCCACATTCACGCCTACTGTCGGCAGTGGTGTGGTTCTGCCGGGGCCAACGGCCACGCCGATAGTC GTGAGCACGCCAACACCAACCCGTTCAACGACACCAACTGTTAGCTCGCCTGTGGTTGCCACTGAAACGGCGACTCCAAC CACACCACCAACTGCCCGCCCAACTAATACACCGACGGCAACTGATGTACCGTTGCCAACAGCAACACCGACACAGCAAC CGTTCACTCCGACAGTAACGCCAACACCGGTACCAACCGCCACAACGACACCGACGCGCCAGCCGCCACCGGTGCCAACA GCTACCTTTACGTCTACACCGACACTAACCATAACGCCCACGCCAGAACCGACTGCCACGGCAACACCGGAGCCAACCGT CACGGCAACGCCGACCACTACCCTGTCGCCAACGGTCGTGCCACGGCCAACGAATACGCCGACGGCGACGTTCACGCCGG AGCCGACGGCGACGCCCACGCCAGAACCGACTGCCACGGCAACACCGGAGCCAACCGTCACGGCAACGCCGACCACTACC CTGTCGCCAACGGTCGTGCCACGGCCAACGAATACGCCGACGGCGACGTTCACGCCGGAGCCGACCGCAACACCGACGTT CATTGCGACGCCAGTGCCGACCTCGACACCGGAGCCAACCGCAACACCAACGGAGACCCCTGTGCCTGCTGTACAGGTGC GTGTCCGGCCAATCGATCCGGTCAATGAAGGTAATCCGCCTGCGGTAACACGCCGTGATGTAGTCATCGAGCTGCTGACA GATGCTGCACTTGATGTGGAGGTGACGTACCGGGTTGAATCCGGCGGAACATACCCGGCGGGTAATCGAGATTATGGTGT TCCAGGTGGATCATCCGGTACCTTGCGGTTTGCAGCCGGATCACGGGCGGGCACAACTGCAACTGTTACCATTGAGGTGT ATGGTGATGACATTGTTGAAGAGGATGAGACGATTCGTTTTCAACTCACCGGTATTACCAATGGCGAGCTGATTGATGCC GTGCAGATGTTGACGATCCGTGATGATGATACGGTCGTCGTGAGTGTTGGGCCAGCCGCCGTAGATGAAGGTAATTCGGG AGCGACAACGCAATTAGAGTTTCCGTTATCGCTCAGTACCACCAATCGTGAGCGCGATGTGCGGGTGCGTTATCGGATTG AACCAATTTCGGCGACACCCGGTCAGGACTATCAGGCGACAACACCGGCCGAACTGGTCATTCCACGCGATGATCAGAAG CCATCAATTATCGTTGTCGTTATCGGCGATGACATCCCTGAGCCGAACGAAACGCTTGAGGTGTTTTTAGAGGCAGTGAG TGGTGGTTCTGTTGGCGCAGCATCAGCCGTTGGCACGATAATTGATGATGACACCCAGAATAGTGTCTTCAAGAGTCAGT GGCCATCGTATACTCAGCGAGTGGCGTATCGCGCTGGCACATTCGTGACGCTGATACCATCGGCAGGCAGAATCGCATAT TACCCGGAACGTGCTGGTGATCAATCGCTATCGTTGGGGGTGTCGGATTGGCGGGGAAAGAGAAACCAGAGACCGAATTC GAGCGCGATGGGAATGAAAGCCAGCGCAATCAGCGGTGGCCAGATGGGGCTGAGCGCAAAGTAG
Upstream 100 bases:
>100_bases CAGTTGTTGGAGTTGCAGGGTGGTTCGATAACCGTGACCAGCACGCCCGGTCAGGGAAGCACCTTCACGATCCGGTTACG TTATCCGAAGGAGCGGGGAC
Downstream 100 bases:
>100_bases AGGGCAAGGGGTGGAATTGCCAGAATAAGTGCAAAGACGGTCATCGCCAGGTTTCCCCACCCAACCGCAGCCACGACCCC GAAGACGGTTAGAACGACGA
Product: hypothetical protein
Products: NA
Alternate protein names: Outer layer protein B; S-layer protein 1 [H]
Number of amino acids: Translated: 687; Mature: 686
Protein sequence:
>687_residues MSSAGKTQTNTGPDYLRWLVGGALLLAILPVFCVTQVIFWWLTPYNQPFISVSAARLLRAYEPFPADLSFAPPAADLPNL AATEVARRTQTPTQAAAFPSPAPIIAVPPPPTRIDPPTPTITPTPTATATSSPAGGGAPTFTPTVGSGVVLPGPTATPIV VSTPTPTRSTTPTVSSPVVATETATPTTPPTARPTNTPTATDVPLPTATPTQQPFTPTVTPTPVPTATTTPTRQPPPVPT ATFTSTPTLTITPTPEPTATATPEPTVTATPTTTLSPTVVPRPTNTPTATFTPEPTATPTPEPTATATPEPTVTATPTTT LSPTVVPRPTNTPTATFTPEPTATPTFIATPVPTSTPEPTATPTETPVPAVQVRVRPIDPVNEGNPPAVTRRDVVIELLT DAALDVEVTYRVESGGTYPAGNRDYGVPGGSSGTLRFAAGSRAGTTATVTIEVYGDDIVEEDETIRFQLTGITNGELIDA VQMLTIRDDDTVVVSVGPAAVDEGNSGATTQLEFPLSLSTTNRERDVRVRYRIEPISATPGQDYQATTPAELVIPRDDQK PSIIVVVIGDDIPEPNETLEVFLEAVSGGSVGAASAVGTIIDDDTQNSVFKSQWPSYTQRVAYRAGTFVTLIPSAGRIAY YPERAGDQSLSLGVSDWRGKRNQRPNSSAMGMKASAISGGQMGLSAK
Sequences:
>Translated_687_residues MSSAGKTQTNTGPDYLRWLVGGALLLAILPVFCVTQVIFWWLTPYNQPFISVSAARLLRAYEPFPADLSFAPPAADLPNL AATEVARRTQTPTQAAAFPSPAPIIAVPPPPTRIDPPTPTITPTPTATATSSPAGGGAPTFTPTVGSGVVLPGPTATPIV VSTPTPTRSTTPTVSSPVVATETATPTTPPTARPTNTPTATDVPLPTATPTQQPFTPTVTPTPVPTATTTPTRQPPPVPT ATFTSTPTLTITPTPEPTATATPEPTVTATPTTTLSPTVVPRPTNTPTATFTPEPTATPTPEPTATATPEPTVTATPTTT LSPTVVPRPTNTPTATFTPEPTATPTFIATPVPTSTPEPTATPTETPVPAVQVRVRPIDPVNEGNPPAVTRRDVVIELLT DAALDVEVTYRVESGGTYPAGNRDYGVPGGSSGTLRFAAGSRAGTTATVTIEVYGDDIVEEDETIRFQLTGITNGELIDA VQMLTIRDDDTVVVSVGPAAVDEGNSGATTQLEFPLSLSTTNRERDVRVRYRIEPISATPGQDYQATTPAELVIPRDDQK PSIIVVVIGDDIPEPNETLEVFLEAVSGGSVGAASAVGTIIDDDTQNSVFKSQWPSYTQRVAYRAGTFVTLIPSAGRIAY YPERAGDQSLSLGVSDWRGKRNQRPNSSAMGMKASAISGGQMGLSAK >Mature_686_residues SSAGKTQTNTGPDYLRWLVGGALLLAILPVFCVTQVIFWWLTPYNQPFISVSAARLLRAYEPFPADLSFAPPAADLPNLA ATEVARRTQTPTQAAAFPSPAPIIAVPPPPTRIDPPTPTITPTPTATATSSPAGGGAPTFTPTVGSGVVLPGPTATPIVV STPTPTRSTTPTVSSPVVATETATPTTPPTARPTNTPTATDVPLPTATPTQQPFTPTVTPTPVPTATTTPTRQPPPVPTA TFTSTPTLTITPTPEPTATATPEPTVTATPTTTLSPTVVPRPTNTPTATFTPEPTATPTPEPTATATPEPTVTATPTTTL SPTVVPRPTNTPTATFTPEPTATPTFIATPVPTSTPEPTATPTETPVPAVQVRVRPIDPVNEGNPPAVTRRDVVIELLTD AALDVEVTYRVESGGTYPAGNRDYGVPGGSSGTLRFAAGSRAGTTATVTIEVYGDDIVEEDETIRFQLTGITNGELIDAV QMLTIRDDDTVVVSVGPAAVDEGNSGATTQLEFPLSLSTTNRERDVRVRYRIEPISATPGQDYQATTPAELVIPRDDQKP SIIVVVIGDDIPEPNETLEVFLEAVSGGSVGAASAVGTIIDDDTQNSVFKSQWPSYTQRVAYRAGTFVTLIPSAGRIAYY PERAGDQSLSLGVSDWRGKRNQRPNSSAMGMKASAISGGQMGLSAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall, S-layer [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 SLH (S-layer homology) domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008965 - InterPro: IPR002102 - InterPro: IPR018452 - InterPro: IPR001119 [H]
Pfam domain/function: PF00963 Cohesin; PF00395 SLH [H]
EC number: NA
Molecular weight: Translated: 71465; Mature: 71334
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSAGKTQTNTGPDYLRWLVGGALLLAILPVFCVTQVIFWWLTPYNQPFISVSAARLLRA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHH YEPFPADLSFAPPAADLPNLAATEVARRTQTPTQAAAFPSPAPIIAVPPPPTRIDPPTPT CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCC ITPTPTATATSSPAGGGAPTFTPTVGSGVVLPGPTATPIVVSTPTPTRSTTPTVSSPVVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCEEE TETATPTTPPTARPTNTPTATDVPLPTATPTQQPFTPTVTPTPVPTATTTPTRQPPPVPT ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ATFTSTPTLTITPTPEPTATATPEPTVTATPTTTLSPTVVPRPTNTPTATFTPEPTATPT EEECCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCEEECCCCCCCCC PEPTATATPEPTVTATPTTTLSPTVVPRPTNTPTATFTPEPTATPTFIATPVPTSTPEPT CCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCC ATPTETPVPAVQVRVRPIDPVNEGNPPAVTRRDVVIELLTDAALDVEVTYRVESGGTYPA CCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHEEHHCCEEEEEEEEEEECCCCCCC GNRDYGVPGGSSGTLRFAAGSRAGTTATVTIEVYGDDIVEEDETIRFQLTGITNGELIDA CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCHHEEE VQMLTIRDDDTVVVSVGPAAVDEGNSGATTQLEFPLSLSTTNRERDVRVRYRIEPISATP EEEEEEECCCEEEEEECCHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECCCCC GQDYQATTPAELVIPRDDQKPSIIVVVIGDDIPEPNETLEVFLEAVSGGSVGAASAVGTI CCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHCEE IDDDTQNSVFKSQWPSYTQRVAYRAGTFVTLIPSAGRIAYYPERAGDQSLSLGVSDWRGK ECCCCCCCHHHHCCCCHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCEEEECCHHHCCC RNQRPNSSAMGMKASAISGGQMGLSAK CCCCCCCCCCCEEEEECCCCCCCCCCC >Mature Secondary Structure SSAGKTQTNTGPDYLRWLVGGALLLAILPVFCVTQVIFWWLTPYNQPFISVSAARLLRA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHH YEPFPADLSFAPPAADLPNLAATEVARRTQTPTQAAAFPSPAPIIAVPPPPTRIDPPTPT CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCC ITPTPTATATSSPAGGGAPTFTPTVGSGVVLPGPTATPIVVSTPTPTRSTTPTVSSPVVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCEEE TETATPTTPPTARPTNTPTATDVPLPTATPTQQPFTPTVTPTPVPTATTTPTRQPPPVPT ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ATFTSTPTLTITPTPEPTATATPEPTVTATPTTTLSPTVVPRPTNTPTATFTPEPTATPT EEECCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCEEECCCCCCCCC PEPTATATPEPTVTATPTTTLSPTVVPRPTNTPTATFTPEPTATPTFIATPVPTSTPEPT CCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCC ATPTETPVPAVQVRVRPIDPVNEGNPPAVTRRDVVIELLTDAALDVEVTYRVESGGTYPA CCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHEEHHCCEEEEEEEEEEECCCCCCC GNRDYGVPGGSSGTLRFAAGSRAGTTATVTIEVYGDDIVEEDETIRFQLTGITNGELIDA CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCHHEEE VQMLTIRDDDTVVVSVGPAAVDEGNSGATTQLEFPLSLSTTNRERDVRVRYRIEPISATP EEEEEEECCCEEEEEECCHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECCCCC GQDYQATTPAELVIPRDDQKPSIIVVVIGDDIPEPNETLEVFLEAVSGGSVGAASAVGTI CCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHCEE IDDDTQNSVFKSQWPSYTQRVAYRAGTFVTLIPSAGRIAYYPERAGDQSLSLGVSDWRGK ECCCCCCCHHHHCCCCHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCEEEECCHHHCCC RNQRPNSSAMGMKASAISGGQMGLSAK CCCCCCCCCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8458832 [H]