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The map label for this gene is rbsR [H]

Identifier: 222526195

GI number: 222526195

Start: 3649501

End: 3650490

Strand: Reverse

Name: rbsR [H]

Synonym: Chy400_2954

Alternate gene names: 222526195

Gene position: 3650490-3649501 (Counterclockwise)

Preceding gene: 222526196

Following gene: 222526194

Centisome position: 69.28

GC content: 55.35

Gene sequence:

>990_bases
ATGTACGATGTGGCGCGACTGGCCGGCGTTTCGCAGACTACGGTATCGTTCGTGGTCAACAATGTCACGAGCGCTGCCAT
TAGTCAGGAAACACGCGACCGGGTCTGGGCGGCCATTCATGCCCTTGGCTGGCGCCCTAATGCAGTGGCGCGTAGTTTGC
GTACCCGCCACTCACAAACGCTAGGGTTGATCTCCGACGAGGTCGTCACGTCTCCCTATGCGGTACGCATGATTTTGGGC
GCCCAAGAAGCCGCATGGAATAATCGTCAGATGCTCCTGGTAGTCAATACCAGTGGTCAGCAGGATATTGAGCAGACAGC
GCTGCAATTTATGCTGGAACGCCAAGTTGAGGGCTTGATTTACGCAACAATGTATCACCACGAAGTGACACCACCGACTG
GAATTACGACAGTACCAACAATTCTGGTCAACTGCTTCGTGGCCGACCGGTCATTGCCGGCGATTATTCCTGACGAAGTG
CAGGGAGGGTATACGGCGACGGAAACCCTGATCCTGCGGGGACACCGCCGGATCGCCTTTATCAACGAGATCATTCCAAT
GCCGGCTCTGTTTGGTCGCCTGGAAGGGTACCGGCGGGCGCTGACCGATTATGGCTTACCGTTTGATCAGTCACTAGTAC
GCAGTTGTCATTCCAATGCCCAGGATGCGTTTAGCGCAGCCCGTGATCTGCTCGAACGGCCTGATCGGCCAACCGCCATC
TTCTGCTTCAATGACAAAATGGCGATGGGCGTGTATGATGCGATCAAGCGGTTGGGCTTGCGCATCCCCCAAGACGTGGC
AGTTATCGGGTTTGACAATCTCGAACTCATCGCTGCTCAGCTCTATCCACCACTCACGACCATCGAGCTACCGCACTACG
AGATGGGCAAACGAGCTGTAGAACTATTGCAATCGCTGCCCGCAGGCGAAAGCCTGCCACCGACACAGCATTATATCCCC
TGCCCGTTAATTGAACGGGCATCAGTATAG

Upstream 100 bases:

>100_bases
TGTGTTAACGTATAAATCGAATTAGTAATTCGTTTTAGTCCAATTCAAGATACGGTCAATGAACGACCAATCTCGTCCAA
AACGGAACCGTCCGCCATCC

Downstream 100 bases:

>100_bases
TTGTTGTTCGTAACGTTACTCTTCGCGGAAAGGAGGTGTCTTTGTCGCAACAACCACTTTTGAACGGATCGTCAGAGTTG
ACTGCAACCCATGGAAGGAG

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MYDVARLAGVSQTTVSFVVNNVTSAAISQETRDRVWAAIHALGWRPNAVARSLRTRHSQTLGLISDEVVTSPYAVRMILG
AQEAAWNNRQMLLVVNTSGQQDIEQTALQFMLERQVEGLIYATMYHHEVTPPTGITTVPTILVNCFVADRSLPAIIPDEV
QGGYTATETLILRGHRRIAFINEIIPMPALFGRLEGYRRALTDYGLPFDQSLVRSCHSNAQDAFSAARDLLERPDRPTAI
FCFNDKMAMGVYDAIKRLGLRIPQDVAVIGFDNLELIAAQLYPPLTTIELPHYEMGKRAVELLQSLPAGESLPPTQHYIP
CPLIERASV

Sequences:

>Translated_329_residues
MYDVARLAGVSQTTVSFVVNNVTSAAISQETRDRVWAAIHALGWRPNAVARSLRTRHSQTLGLISDEVVTSPYAVRMILG
AQEAAWNNRQMLLVVNTSGQQDIEQTALQFMLERQVEGLIYATMYHHEVTPPTGITTVPTILVNCFVADRSLPAIIPDEV
QGGYTATETLILRGHRRIAFINEIIPMPALFGRLEGYRRALTDYGLPFDQSLVRSCHSNAQDAFSAARDLLERPDRPTAI
FCFNDKMAMGVYDAIKRLGLRIPQDVAVIGFDNLELIAAQLYPPLTTIELPHYEMGKRAVELLQSLPAGESLPPTQHYIP
CPLIERASV
>Mature_329_residues
MYDVARLAGVSQTTVSFVVNNVTSAAISQETRDRVWAAIHALGWRPNAVARSLRTRHSQTLGLISDEVVTSPYAVRMILG
AQEAAWNNRQMLLVVNTSGQQDIEQTALQFMLERQVEGLIYATMYHHEVTPPTGITTVPTILVNCFVADRSLPAIIPDEV
QGGYTATETLILRGHRRIAFINEIIPMPALFGRLEGYRRALTDYGLPFDQSLVRSCHSNAQDAFSAARDLLERPDRPTAI
FCFNDKMAMGVYDAIKRLGLRIPQDVAVIGFDNLELIAAQLYPPLTTIELPHYEMGKRAVELLQSLPAGESLPPTQHYIP
CPLIERASV

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=307, Percent_Identity=36.1563517915309, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787948, Length=330, Percent_Identity=32.1212121212121, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1790369, Length=329, Percent_Identity=31.306990881459, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1789068, Length=333, Percent_Identity=30.03003003003, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789202, Length=332, Percent_Identity=30.1204819277108, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788474, Length=328, Percent_Identity=29.8780487804878, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1786540, Length=334, Percent_Identity=29.3413173652695, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787580, Length=328, Percent_Identity=26.8292682926829, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1787906, Length=263, Percent_Identity=30.4182509505703, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI48994940, Length=327, Percent_Identity=25.6880733944954, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786268, Length=307, Percent_Identity=24.1042345276873, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790715, Length=325, Percent_Identity=24, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789456, Length=336, Percent_Identity=25.297619047619, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36524; Mature: 36524

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDVARLAGVSQTTVSFVVNNVTSAAISQETRDRVWAAIHALGWRPNAVARSLRTRHSQT
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LGLISDEVVTSPYAVRMILGAQEAAWNNRQMLLVVNTSGQQDIEQTALQFMLERQVEGLI
HHHHHHHHHCCCHHHHHHHCCHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHEE
YATMYHHEVTPPTGITTVPTILVNCFVADRSLPAIIPDEVQGGYTATETLILRGHRRIAF
EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHH
INEIIPMPALFGRLEGYRRALTDYGLPFDQSLVRSCHSNAQDAFSAARDLLERPDRPTAI
HHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEE
FCFNDKMAMGVYDAIKRLGLRIPQDVAVIGFDNLELIAAQLYPPLTTIELPHYEMGKRAV
EEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEECCCHHHHHHHH
ELLQSLPAGESLPPTQHYIPCPLIERASV
HHHHHCCCCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MYDVARLAGVSQTTVSFVVNNVTSAAISQETRDRVWAAIHALGWRPNAVARSLRTRHSQT
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LGLISDEVVTSPYAVRMILGAQEAAWNNRQMLLVVNTSGQQDIEQTALQFMLERQVEGLI
HHHHHHHHHCCCHHHHHHHCCHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHEE
YATMYHHEVTPPTGITTVPTILVNCFVADRSLPAIIPDEVQGGYTATETLILRGHRRIAF
EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHH
INEIIPMPALFGRLEGYRRALTDYGLPFDQSLVRSCHSNAQDAFSAARDLLERPDRPTAI
HHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEE
FCFNDKMAMGVYDAIKRLGLRIPQDVAVIGFDNLELIAAQLYPPLTTIELPHYEMGKRAV
EEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEECCCHHHHHHHH
ELLQSLPAGESLPPTQHYIPCPLIERASV
HHHHHCCCCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]