| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is yfbK [C]
Identifier: 222526140
GI number: 222526140
Start: 3581411
End: 3582670
Strand: Direct
Name: yfbK [C]
Synonym: Chy400_2897
Alternate gene names: 222526140
Gene position: 3581411-3582670 (Clockwise)
Preceding gene: 222526139
Following gene: 222526141
Centisome position: 67.97
GC content: 56.35
Gene sequence:
>1260_bases ATGGCAGGAGAAGTTACCCTACGTGCCGCACTGGCGCGTCCCTTTCTGGCCGCGACAACCACGCCACAGGTAGCGTATGT ATTGCTTGAAGCACAGCCGGGTGCGGTATTGACGCAGGTACGAGTACCGATTCACGTCTGTTTCGTGCTCGACCGCAGCG GTTCGATGAAGGGCGAGAAGATTGAACGGTTGCGACAGGCGGTGGTGCGAGCAATCGAGCAACTCAATGAGCAGGATATC ATTTCGATTGTGATTTTTGACCATCGGACTGAGGTACTGGTGCCGGCCCAACCGGTGCGGCAACGGACAGCGATCCTCGA TCTGGTGCATCGGATCCGCGATGCCGGTGGTACTCGCATTGCCCCGGCCCTGGAGAAGGGGATACAGGAATTACAAAAGA TGCCGCAGGGGGTGCGCCGACTGGTACTGCTAACCGATGGTCAGACCGAACACGAGAAGGAGTGTCTGCTCCGGGCAGAC GATGCCGGACGGTTGGGGATTCCGATCACAGCGTTGGGGATCGGTAAGGATTGGAACGAAGACCTGCTGATTGAAATGGC AAATCGCTCGCGGGGAGTAGCCGATTACATTGCGCAGCCCGGCGAGATTGTGCAATACTTTCAGCACACGGTACAGCGTG CCCAGCAGACCACCATCCAGAACAGTGTCCTCACGCTGCGCCTGGTGCAGGGAGTGACACCACGGGCCGTCTGGCAGGTG ACGCCGCTCATTGACAATCTCGGTTATCAGCCAATTGCTGATCGGGCTGTCAGTGTCAATCTCGGCGAGCTTGAGAGTGG GCAGGTGCGGGTATTGCTGATCGAATTGGTGATTGATCCCCGTCCTATGGGGACGTATCGGATCGGTCAGGCTGAAATCA GCTACGATGCACCGGCATTGCAGATTCAGGGCGAGAAGACGAAAATCGATATTATGCTCACCTTCACTGCCGATCCGGCC CAGTTGCAACAGGTCAATCCCAACGTTATGAACATCGTCGAAAAGGTCAGCGCCTTTAAGCTACAAACGCGCGCCTTGCA AGACCTGGCTGCCGGTGATGTCAGTGGGGCAACCCAGAAGTTGAAGAGTGCCGTCACGCGCTTGCTCAATCAGGGTGAAG TAGAACTGGCGGCAACGATGCAACAGGAGATTGCCAACCTCGAACAGCACGGCCAGATGTCGAGTGAAGGCCAGAAGACT ATCAAGTTCCAGGGGCGGAAGACGGTTAGGCTAACCGATATTGAATTACCAAAGGAGTAG
Upstream 100 bases:
>100_bases CGCTACAATACAGGTAGTTGCAACCGTTGCCGACCTCGCATCGTCGCATAGGCGAAGTTATTTTGCCGAATGGCCGTCAT GCAGAGACGAGGAGTTTGCC
Downstream 100 bases:
>100_bases TATGTACTTTTTGGTAACCAACGATGATGGCTACCAGAGTCCGGGTCTGGTAGCGCTGCGTGCTGCTTTAAGTGACATTG GCGAAGTGGCTGTCGTTGCG
Product: von Willebrand factor type A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MAGEVTLRAALARPFLAATTTPQVAYVLLEAQPGAVLTQVRVPIHVCFVLDRSGSMKGEKIERLRQAVVRAIEQLNEQDI ISIVIFDHRTEVLVPAQPVRQRTAILDLVHRIRDAGGTRIAPALEKGIQELQKMPQGVRRLVLLTDGQTEHEKECLLRAD DAGRLGIPITALGIGKDWNEDLLIEMANRSRGVADYIAQPGEIVQYFQHTVQRAQQTTIQNSVLTLRLVQGVTPRAVWQV TPLIDNLGYQPIADRAVSVNLGELESGQVRVLLIELVIDPRPMGTYRIGQAEISYDAPALQIQGEKTKIDIMLTFTADPA QLQQVNPNVMNIVEKVSAFKLQTRALQDLAAGDVSGATQKLKSAVTRLLNQGEVELAATMQQEIANLEQHGQMSSEGQKT IKFQGRKTVRLTDIELPKE
Sequences:
>Translated_419_residues MAGEVTLRAALARPFLAATTTPQVAYVLLEAQPGAVLTQVRVPIHVCFVLDRSGSMKGEKIERLRQAVVRAIEQLNEQDI ISIVIFDHRTEVLVPAQPVRQRTAILDLVHRIRDAGGTRIAPALEKGIQELQKMPQGVRRLVLLTDGQTEHEKECLLRAD DAGRLGIPITALGIGKDWNEDLLIEMANRSRGVADYIAQPGEIVQYFQHTVQRAQQTTIQNSVLTLRLVQGVTPRAVWQV TPLIDNLGYQPIADRAVSVNLGELESGQVRVLLIELVIDPRPMGTYRIGQAEISYDAPALQIQGEKTKIDIMLTFTADPA QLQQVNPNVMNIVEKVSAFKLQTRALQDLAAGDVSGATQKLKSAVTRLLNQGEVELAATMQQEIANLEQHGQMSSEGQKT IKFQGRKTVRLTDIELPKE >Mature_418_residues AGEVTLRAALARPFLAATTTPQVAYVLLEAQPGAVLTQVRVPIHVCFVLDRSGSMKGEKIERLRQAVVRAIEQLNEQDII SIVIFDHRTEVLVPAQPVRQRTAILDLVHRIRDAGGTRIAPALEKGIQELQKMPQGVRRLVLLTDGQTEHEKECLLRADD AGRLGIPITALGIGKDWNEDLLIEMANRSRGVADYIAQPGEIVQYFQHTVQRAQQTTIQNSVLTLRLVQGVTPRAVWQVT PLIDNLGYQPIADRAVSVNLGELESGQVRVLLIELVIDPRPMGTYRIGQAEISYDAPALQIQGEKTKIDIMLTFTADPAQ LQQVNPNVMNIVEKVSAFKLQTRALQDLAAGDVSGATQKLKSAVTRLLNQGEVELAATMQQEIANLEQHGQMSSEGQKTI KFQGRKTVRLTDIELPKE
Specific function: Unknown
COG id: COG2304
COG function: function code R; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
Organism=Homo sapiens, GI133925809, Length=170, Percent_Identity=33.5294117647059, Blast_Score=69, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002035 [H]
Pfam domain/function: PF00092 VWA [H]
EC number: NA
Molecular weight: Translated: 46245; Mature: 46114
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGEVTLRAALARPFLAATTTPQVAYVLLEAQPGAVLTQVRVPIHVCFVLDRSGSMKGEK CCCCEEHHHHHHCCHHEECCCCCEEEEEEECCCCCEEEEEECEEEEEEEEECCCCCCHHH IERLRQAVVRAIEQLNEQDIISIVIFDHRTEVLVPAQPVRQRTAILDLVHRIRDAGGTRI HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHCCCCEE APALEKGIQELQKMPQGVRRLVLLTDGQTEHEKECLLRADDAGRLGIPITALGIGKDWNE CHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHEEECCCCCCCCCCEEEEECCCCCCH DLLIEMANRSRGVADYIAQPGEIVQYFQHTVQRAQQTTIQNSVLTLRLVQGVTPRAVWQV HHHHEEHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCHHHEEE TPLIDNLGYQPIADRAVSVNLGELESGQVRVLLIELVIDPRPMGTYRIGQAEISYDAPAL HHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCCEEECCEEECCCCCEE QIQGEKTKIDIMLTFTADPAQLQQVNPNVMNIVEKVSAFKLQTRALQDLAAGDVSGATQK EEECCCEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH LKSAVTRLLNQGEVELAATMQQEIANLEQHGQMSSEGQKTIKFQGRKTVRLTDIELPKE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCC >Mature Secondary Structure AGEVTLRAALARPFLAATTTPQVAYVLLEAQPGAVLTQVRVPIHVCFVLDRSGSMKGEK CCCEEHHHHHHCCHHEECCCCCEEEEEEECCCCCEEEEEECEEEEEEEEECCCCCCHHH IERLRQAVVRAIEQLNEQDIISIVIFDHRTEVLVPAQPVRQRTAILDLVHRIRDAGGTRI HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHCCCCEE APALEKGIQELQKMPQGVRRLVLLTDGQTEHEKECLLRADDAGRLGIPITALGIGKDWNE CHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHEEECCCCCCCCCCEEEEECCCCCCH DLLIEMANRSRGVADYIAQPGEIVQYFQHTVQRAQQTTIQNSVLTLRLVQGVTPRAVWQV HHHHEEHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCHHHEEE TPLIDNLGYQPIADRAVSVNLGELESGQVRVLLIELVIDPRPMGTYRIGQAEISYDAPAL HHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCCEEECCEEECCCCCEE QIQGEKTKIDIMLTFTADPAQLQQVNPNVMNIVEKVSAFKLQTRALQDLAAGDVSGATQK EEECCCEEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH LKSAVTRLLNQGEVELAATMQQEIANLEQHGQMSSEGQKTIKFQGRKTVRLTDIELPKE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]