| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is trxA
Identifier: 222525986
GI number: 222525986
Start: 3380469
End: 3380801
Strand: Reverse
Name: trxA
Synonym: Chy400_2742
Alternate gene names: 222525986
Gene position: 3380801-3380469 (Counterclockwise)
Preceding gene: 222525989
Following gene: 222525985
Centisome position: 64.16
GC content: 53.15
Gene sequence:
>333_bases ATGGCTAAGCCGATTGAGGTACACGACTCGGATTTTGCCGAGAAAGTTTTGAAGTCGAAAACGCCGGTTGTGGTTGACTT TTGGGCACCGTGGTGTGGGCCGTGTCGCGTGATTGCACCGATTCTCGATAAACTGGCCGGCGAATACGCAGGCCGTTTGA CTATTGCCAAGGTCAATACAGACGATAATGTTCAGTATGCCTCGCAGCTCGGTATTCAGGGTATCCCAACGCTGGTTATC TTCAAGGATGGCCGCGAGGTAGGCCGCCTGGTCGGCGCTCGACCAGAAGCGATGTACCGCGAAATCTTTGATAAAGTTCT GGCAATGGCGTGA
Upstream 100 bases:
>100_bases TCCCTCTTGACAGATGCTCTTCTGCGCGCTATAGTATACCCCCAGGGGGTATCTAATACAGATACTGCCTGTATGATTAC TGTGGAGGAGGAATAATTCA
Downstream 100 bases:
>100_bases ACACACCATCGCCGGAACCAGAATCTGCGGGTGAAGCAGCAATGAGCACGGGGGTTCGTCCGCTTGCGCCAGAACGACGC GACGAAGTGTTACGGCGTTT
Product: thioredoxin
Products: NA
Alternate protein names: Trx
Number of amino acids: Translated: 110; Mature: 109
Protein sequence:
>110_residues MAKPIEVHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVI FKDGREVGRLVGARPEAMYREIFDKVLAMA
Sequences:
>Translated_110_residues MAKPIEVHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVI FKDGREVGRLVGARPEAMYREIFDKVLAMA >Mature_109_residues AKPIEVHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIF KDGREVGRLVGARPEAMYREIFDKVLAMA
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain
Homologues:
Organism=Homo sapiens, GI21361403, Length=98, Percent_Identity=36.734693877551, Blast_Score=85, Evalue=1e-17, Organism=Homo sapiens, GI21361657, Length=92, Percent_Identity=34.7826086956522, Blast_Score=69, Evalue=6e-13, Organism=Homo sapiens, GI50592994, Length=76, Percent_Identity=39.4736842105263, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI87082331, Length=106, Percent_Identity=49.0566037735849, Blast_Score=111, Evalue=1e-26, Organism=Escherichia coli, GI1788936, Length=94, Percent_Identity=46.8085106382979, Blast_Score=98, Evalue=1e-22, Organism=Escherichia coli, GI87081747, Length=104, Percent_Identity=33.6538461538462, Blast_Score=76, Evalue=5e-16, Organism=Caenorhabditis elegans, GI212646193, Length=98, Percent_Identity=36.734693877551, Blast_Score=81, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17507705, Length=80, Percent_Identity=36.25, Blast_Score=66, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17510299, Length=91, Percent_Identity=35.1648351648352, Blast_Score=66, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17556044, Length=76, Percent_Identity=39.4736842105263, Blast_Score=65, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71998175, Length=91, Percent_Identity=37.3626373626374, Blast_Score=65, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17509965, Length=83, Percent_Identity=36.144578313253, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115532378, Length=72, Percent_Identity=38.8888888888889, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115532380, Length=72, Percent_Identity=38.8888888888889, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71980562, Length=105, Percent_Identity=27.6190476190476, Blast_Score=63, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17544108, Length=72, Percent_Identity=38.8888888888889, Blast_Score=62, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6321648, Length=84, Percent_Identity=41.6666666666667, Blast_Score=77, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6323072, Length=93, Percent_Identity=38.7096774193548, Blast_Score=77, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6319925, Length=89, Percent_Identity=34.8314606741573, Blast_Score=70, Evalue=9e-14, Organism=Drosophila melanogaster, GI28573567, Length=97, Percent_Identity=36.0824742268041, Blast_Score=82, Evalue=8e-17, Organism=Drosophila melanogaster, GI24639826, Length=100, Percent_Identity=35, Blast_Score=80, Evalue=2e-16, Organism=Drosophila melanogaster, GI21358065, Length=90, Percent_Identity=40, Blast_Score=75, Evalue=8e-15, Organism=Drosophila melanogaster, GI24664269, Length=74, Percent_Identity=39.1891891891892, Blast_Score=70, Evalue=4e-13, Organism=Drosophila melanogaster, GI17648013, Length=76, Percent_Identity=36.8421052631579, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24583090, Length=76, Percent_Identity=36.8421052631579, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI19921434, Length=77, Percent_Identity=38.961038961039, Blast_Score=66, Evalue=5e-12,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): THIO_CHLAA (Q7M1B9)
Other databases:
- EMBL: CP000909 - PIR: A55124 - RefSeq: YP_001636136.1 - ProteinModelPortal: Q7M1B9 - SMR: Q7M1B9 - GeneID: 5827009 - GenomeReviews: CP000909_GR - KEGG: cau:Caur_2541 - HOGENOM: HBG493509 - OMA: NPGIAST - ProtClustDB: CLSK974666 - GO: GO:0006810 - InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 - Gene3D: G3DSA:3.40.30.10 - PANTHER: PTHR10438 - PIRSF: PIRSF000077 - PRINTS: PR00421 - TIGRFAMs: TIGR01068
Pfam domain/function: PF00085 Thioredoxin; SSF52833 Thiordxn-like_fd
EC number: NA
Molecular weight: Translated: 12131; Mature: 12000
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: PS00194 THIOREDOXIN_1; PS51352 THIOREDOXIN_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKPIEVHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNT CCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC DDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREIFDKVLAMA CCCHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure AKPIEVHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNT CCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC DDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREIFDKVLAMA CCCHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA