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The map label for this gene is pds [H]

Identifier: 222525782

GI number: 222525782

Start: 3186936

End: 3188327

Strand: Reverse

Name: pds [H]

Synonym: Chy400_2535

Alternate gene names: 222525782

Gene position: 3188327-3186936 (Counterclockwise)

Preceding gene: 222525783

Following gene: 222525781

Centisome position: 60.51

GC content: 56.03

Gene sequence:

>1392_bases
ATGCGAATCGTTATTGCAGGTGCCGGGCCAGCCGGTATGGTGGTTGCCCGCACGATGGTTGAGCGTGGTCATGATGTGAT
TGTGCTCGAAAAGCGGGATGTGCCCGGTGGTAAGGTGTCGGCGTGGCAGGATGCCGATGGTGATTGGATCGAGAGTGGGT
TGCACGTTTTCTTTGGGGCATACCATAATTTGCTGGCGTTTTTGGAGCGGTATGGCCTTGGCGATACGTTTAACTGGAAA
CCGGCAGAGATGATTTTTGCCTCTGAACGCCATGGGCTGGCACCGATCCGGTTTGTGCCGTGGCTGCCGACGCCGTTTAA
CGGTCTGGCCGGTGTGCTGGCGTTTAAGCCGTTACCGCTGCGGGATAAGTTGCGGATGGGGCTGGGATTGCTGCGGGTTA
TTCTCGGTGATCAGGCGTATGTTGATGCGCAGGATAATGAGACGTATGCCTCGTGGCATTTACGGCACGGGATGGGTCAG
CGTTCGCTCGATGAAGTGATGCATACGATGGCGCTGGCGCTGAACTTTCAACGTGCCGACCGGGTTTCGGCCAAGCTCCC
CTTGACCGCTATGCTGCACTTTGCGCACGAGAAGGAAGCGCCACGGATGGCGTTGGTGAAGGGTTCGCCTGATACCAATA
TCTGGCGGCCTTTGATTGCGCAGATTGAGCGTTTGGGAGGGAAGGTTGAGCTGAATGCCCGCGTGTCGGCTATTGAGTAT
GATAGCGAGACAAATCAGGTTACCGGTTTTCGGCTGGACGATGGCCGGCTGGTGACCGGCGATGTGTATGTGTCGGCGAT
GCCGGTACACAATCTGCGTAAGGTGATTCCGCCGGCGCTCCGTGAGTTGCCCTACTTTGCCAATTTGAGTCATCTGAAGG
GTTCGCCGGTGATTACGATGCAGCTCTTCTTCGACCGCCGTATTGCGGGAGTGGATAATTTGCTTTTTAGTGCCGGCACG
CACCTCAGTGTGTACGCTGATATGGCTATGGTGGCTCCGGAGTACCATAAGGGGGAACGGAGTATTATGCAGTTTGTGGT
TGCGCCGGCAGCCGAGCTGATTACGTTGCCCGATGATGAGCTGGTGCAGTTTGTGATGAGTGAGTTTGTCAGGCTGCATC
CGAATGCCCGTGAGGCGAAGTTGTTGAAGTATACGATTGTGCGGATTCCTAATTCGGTGTATCAGGCGTTACCGGGTGTT
GATAAGTACCGACCGGATCAGGCGACGCCGGTACGCAATTTCTTCCTGGCCGGTGATTACACGCGCCAACATTTTCTGGC
TTCGATTGAGGGAGCGGTGATCAGCGCCAATCGGTGCGTCGAGCGGATTACCGAGGCGCAGGCGCGCGGTGATCTTGTGT
TGCAACCGTACATGAGCGTAGCAGCCGATTGA

Upstream 100 bases:

>100_bases
CAATAGCTGTTCATTTGCCTTGCGTGGGATTCGTAGCCGTGCTATAAAGATAAAGGCGAAGGTTGTTCATTTTTGCACAT
AGAACAGGAAGCGCAGTCCT

Downstream 100 bases:

>100_bases
GACATCCCGTATACTGATGATAGACCAAAGCAACCAGTGCTGATGTCCACAGGTTGACTCTAAGAAGTTTTGTATTTGCT
AAGGGCTGCTATGCTCGCCA

Product: Carotene 7,8-desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MRIVIAGAGPAGMVVARTMVERGHDVIVLEKRDVPGGKVSAWQDADGDWIESGLHVFFGAYHNLLAFLERYGLGDTFNWK
PAEMIFASERHGLAPIRFVPWLPTPFNGLAGVLAFKPLPLRDKLRMGLGLLRVILGDQAYVDAQDNETYASWHLRHGMGQ
RSLDEVMHTMALALNFQRADRVSAKLPLTAMLHFAHEKEAPRMALVKGSPDTNIWRPLIAQIERLGGKVELNARVSAIEY
DSETNQVTGFRLDDGRLVTGDVYVSAMPVHNLRKVIPPALRELPYFANLSHLKGSPVITMQLFFDRRIAGVDNLLFSAGT
HLSVYADMAMVAPEYHKGERSIMQFVVAPAAELITLPDDELVQFVMSEFVRLHPNAREAKLLKYTIVRIPNSVYQALPGV
DKYRPDQATPVRNFFLAGDYTRQHFLASIEGAVISANRCVERITEAQARGDLVLQPYMSVAAD

Sequences:

>Translated_463_residues
MRIVIAGAGPAGMVVARTMVERGHDVIVLEKRDVPGGKVSAWQDADGDWIESGLHVFFGAYHNLLAFLERYGLGDTFNWK
PAEMIFASERHGLAPIRFVPWLPTPFNGLAGVLAFKPLPLRDKLRMGLGLLRVILGDQAYVDAQDNETYASWHLRHGMGQ
RSLDEVMHTMALALNFQRADRVSAKLPLTAMLHFAHEKEAPRMALVKGSPDTNIWRPLIAQIERLGGKVELNARVSAIEY
DSETNQVTGFRLDDGRLVTGDVYVSAMPVHNLRKVIPPALRELPYFANLSHLKGSPVITMQLFFDRRIAGVDNLLFSAGT
HLSVYADMAMVAPEYHKGERSIMQFVVAPAAELITLPDDELVQFVMSEFVRLHPNAREAKLLKYTIVRIPNSVYQALPGV
DKYRPDQATPVRNFFLAGDYTRQHFLASIEGAVISANRCVERITEAQARGDLVLQPYMSVAAD
>Mature_463_residues
MRIVIAGAGPAGMVVARTMVERGHDVIVLEKRDVPGGKVSAWQDADGDWIESGLHVFFGAYHNLLAFLERYGLGDTFNWK
PAEMIFASERHGLAPIRFVPWLPTPFNGLAGVLAFKPLPLRDKLRMGLGLLRVILGDQAYVDAQDNETYASWHLRHGMGQ
RSLDEVMHTMALALNFQRADRVSAKLPLTAMLHFAHEKEAPRMALVKGSPDTNIWRPLIAQIERLGGKVELNARVSAIEY
DSETNQVTGFRLDDGRLVTGDVYVSAMPVHNLRKVIPPALRELPYFANLSHLKGSPVITMQLFFDRRIAGVDNLLFSAGT
HLSVYADMAMVAPEYHKGERSIMQFVVAPAAELITLPDDELVQFVMSEFVRLHPNAREAKLLKYTIVRIPNSVYQALPGV
DKYRPDQATPVRNFFLAGDYTRQHFLASIEGAVISANRCVERITEAQARGDLVLQPYMSVAAD

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 51592; Mature: 51592

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS00133 CARBOXYPEPT_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVIAGAGPAGMVVARTMVERGHDVIVLEKRDVPGGKVSAWQDADGDWIESGLHVFFGA
CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YHNLLAFLERYGLGDTFNWKPAEMIFASERHGLAPIRFVPWLPTPFNGLAGVLAFKPLPL
HHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
RDKLRMGLGLLRVILGDQAYVDAQDNETYASWHLRHGMGQRSLDEVMHTMALALNFQRAD
HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RVSAKLPLTAMLHFAHEKEAPRMALVKGSPDTNIWRPLIAQIERLGGKVELNARVSAIEY
HCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEE
DSETNQVTGFRLDDGRLVTGDVYVSAMPVHNLRKVIPPALRELPYFANLSHLKGSPVITM
CCCCCCEEEEEECCCEEEEEEEEEEEECHHHHHHHCCHHHHHCCCCCCHHHCCCCCEEEE
QLFFDRRIAGVDNLLFSAGTHLSVYADMAMVAPEYHKGERSIMQFVVAPAAELITLPDDE
EEEHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHCHHHEEECCHHH
LVQFVMSEFVRLHPNAREAKLLKYTIVRIPNSVYQALPGVDKYRPDQATPVRNFFLAGDY
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHEEECCCH
TRQHFLASIEGAVISANRCVERITEAQARGDLVLQPYMSVAAD
HHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCEEEECHHHHHCC
>Mature Secondary Structure
MRIVIAGAGPAGMVVARTMVERGHDVIVLEKRDVPGGKVSAWQDADGDWIESGLHVFFGA
CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YHNLLAFLERYGLGDTFNWKPAEMIFASERHGLAPIRFVPWLPTPFNGLAGVLAFKPLPL
HHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
RDKLRMGLGLLRVILGDQAYVDAQDNETYASWHLRHGMGQRSLDEVMHTMALALNFQRAD
HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RVSAKLPLTAMLHFAHEKEAPRMALVKGSPDTNIWRPLIAQIERLGGKVELNARVSAIEY
HCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEE
DSETNQVTGFRLDDGRLVTGDVYVSAMPVHNLRKVIPPALRELPYFANLSHLKGSPVITM
CCCCCCEEEEEECCCEEEEEEEEEEEECHHHHHHHCCHHHHHCCCCCCHHHCCCCCEEEE
QLFFDRRIAGVDNLLFSAGTHLSVYADMAMVAPEYHKGERSIMQFVVAPAAELITLPDDE
EEEHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHCHHHEEECCHHH
LVQFVMSEFVRLHPNAREAKLLKYTIVRIPNSVYQALPGVDKYRPDQATPVRNFFLAGDY
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHEEECCCH
TRQHFLASIEGAVISANRCVERITEAQARGDLVLQPYMSVAAD
HHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCEEEECHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]