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The map label for this gene is lsrB [H]

Identifier: 222525712

GI number: 222525712

Start: 3107950

End: 3110076

Strand: Reverse

Name: lsrB [H]

Synonym: Chy400_2463

Alternate gene names: 222525712

Gene position: 3110076-3107950 (Counterclockwise)

Preceding gene: 222525713

Following gene: 222525711

Centisome position: 59.03

GC content: 61.02

Gene sequence:

>2127_bases
ATGAAGTTGACAAAATCCCATCTCTTTCCGGTTGTTCTGCTGATCGTCGCTCTGTTGCTGGCAGCCTGTACACCGCAAGC
TCAGACGCCTGCCCCAACCAGTGCCCCGGCACCGACCAGTGCCCCGGCGCCAACCAGTGCTCCTGCGCCGACGACTGCAC
CAACCGGTAGCGTTGTGTCGGCAACACCTGGTCTGGATATCGATATGATCCTGTTGCCCAAGTTCCTGGGGATCGCCGTC
TTTGATCAGGCATACGAAGGCGCTAAGGAAGCACACGCCGAACTGCAAAACAAGGGCGAATTGATCTTCACCGGGCCAAC
CGCCGAGAACTCGGTGGCCGGGCAGATCGAGACGCTGACCAACGCGGCGACGCAGGGCGTGAAGGCGGTGATGCTCTCGA
ATAACGCCGGTGACCAGATTGCCGCCGCTGCCCAGGCAGCCCAGGCGGCAGGGGTGAAGGTGATCACCTGGGATTCGCCC
ATCCCCTCGGCGCAAGGCGAGAGTGTCTTTGTCGCGCAGGTTGATTTCAACGAGACCGGACGAGTGATGGCCGATATGGC
GCTGTCGATCCTTGGCCCAGAGGGTGGTGAGTTTGCCATTCTCTCGGCCTCGCCCGATGCCGCCAACCAGAACGCCTGGA
TTGCGGCGATGAAAGAGGTATTGACCGAGCCGAAGTATGCCAATCTCAAACTGGTTGACACCGTCTACGGCAACGACCAG
TCCGAGGAAAGCTACAACCAGGCGTTGGCGCTGGTCGATAAATACCCGAATTTGAAGCTGATTATGGCCCCCACCACCGT
TGGCATCGCGGCGGCAGCCAAGGCGATGACCGACGAAGGGCTGTGCGACCGGGTCAAGGTGTCAGGGCTGGGTCTGCCGT
CCGAGATGGTTAGCTACACGCTGAGCGGGTGTGCGCCGCAGTTTGCCCTCTGGAGCTTCACAGACCTGGGTTATCTGACC
TATCATCTGACGTATCTGATCGCTTCCGGCGCATTACAGGGGGTTGAGGGTGAGCGCTTCAACGCCGGGCGGATGGGTAC
CTACACCATCGAGAAGGACCCGACGCGACCAAACGGGCTACGGGTGCTGATGGGGCCGTTCACCGTCTACACTGCCGAAA
ACATCTTGCAAGAGGTTGAGGCACCGAGCGGGACGGGTAATGCTCCGATCACGTTGCAACCGGGCTTGCAGGCCGATATG
ATCCTGCTGCCCAAGTTCCTGGGGATCGCCGTCTTCGATCAGGCACACGAAGGCGCCAAGGAAGCGCACGCCGAGTTGGG
CAATCCGGGACAGTTAATCTTCACCGGGCCAACCGCCGAGAATTCGGTGGCCGGTCAGATCGAGACGCTGACCAACGCGG
CGACGCAGGGGGTGAAGGCGGTGATGCTCTCGAATAACGCCGGTGACCAGATTGCCGCTGCTGCCCAGGCAGCGCAGGCG
GCAGGAGTGAAGGTAATCACCTGGGACTCGCCCATCCCCTCGGCGCAAGGCGAGAGCGTCTTTGTCGCGCAGGTTGATTT
CAGCGAGACCGGGCGGGTGATGGCCGATATGGCGCTGTCGATCCTCGGCCCGGAGGGGGGTGAGTTTGCCATTCTCTCGG
CCTCACCCGATGCCGCCAACCAGAACGCCTGGATCGCGGCGATGAAGCAGGTCTTGACCGAGCCGAAGTATGCCAATCTC
AAACTGGTTGACACCGTCTATGGTAACGACCAGTCCGAGGAGAGCTACAACCAGGCGTTGGCGCTGGTCGATAAATACCC
GAATTTGAAGCTGATTATGGCCCCCACCACCGTTGGCATCGCGGCGGCAGCCAAGGCGATGACCGACGAAGGGTTGTGCG
ACCGGGTCAAGGTGTCGGGGCTGGGTCTGCCGGCAGAGATGGCCAGCTACACCCTCAGCGGGTGTGCGCCGCAGTTTGCC
CTCTGGAGCTTCAAAGACCTGGGTTATCTGACCTACTATCTGGCCTACGGCATTGCCACCGGTCAGTTGCAGGGGGTGGA
AGGTGAGCGCTTCAACGCCGGGCGGATGGGCACCTACACCATCGAGAAGGATCCGACGCGACCGAACGGGCTACGGGTGC
TGATGGGGCCGTTCACCGTCTACACTGCCGAAAACGTGAATGAGTAA

Upstream 100 bases:

>100_bases
AAAGGAGGTGCCTGCCGAAATCGAGACCAGTGTTTCGTCGTAGATGACAGGTATCGAACAGTGGTGTTCAATCGTTGCTC
GTGGTTAGAGGAGTGTGTCT

Downstream 100 bases:

>100_bases
TTGATGTTGCAGACGGCAGGGAGATCATCCCTGCCGTCGCTCACACTAAAGATAGGCGTAGTGATACTATAGAGATGTTT
CCATTGTTATCAATGATCTT

Product: sugar ABC transporter periplasmic component-like protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 708; Mature: 708

Protein sequence:

>708_residues
MKLTKSHLFPVVLLIVALLLAACTPQAQTPAPTSAPAPTSAPAPTSAPAPTTAPTGSVVSATPGLDIDMILLPKFLGIAV
FDQAYEGAKEAHAELQNKGELIFTGPTAENSVAGQIETLTNAATQGVKAVMLSNNAGDQIAAAAQAAQAAGVKVITWDSP
IPSAQGESVFVAQVDFNETGRVMADMALSILGPEGGEFAILSASPDAANQNAWIAAMKEVLTEPKYANLKLVDTVYGNDQ
SEESYNQALALVDKYPNLKLIMAPTTVGIAAAAKAMTDEGLCDRVKVSGLGLPSEMVSYTLSGCAPQFALWSFTDLGYLT
YHLTYLIASGALQGVEGERFNAGRMGTYTIEKDPTRPNGLRVLMGPFTVYTAENILQEVEAPSGTGNAPITLQPGLQADM
ILLPKFLGIAVFDQAHEGAKEAHAELGNPGQLIFTGPTAENSVAGQIETLTNAATQGVKAVMLSNNAGDQIAAAAQAAQA
AGVKVITWDSPIPSAQGESVFVAQVDFSETGRVMADMALSILGPEGGEFAILSASPDAANQNAWIAAMKQVLTEPKYANL
KLVDTVYGNDQSEESYNQALALVDKYPNLKLIMAPTTVGIAAAAKAMTDEGLCDRVKVSGLGLPAEMASYTLSGCAPQFA
LWSFKDLGYLTYYLAYGIATGQLQGVEGERFNAGRMGTYTIEKDPTRPNGLRVLMGPFTVYTAENVNE

Sequences:

>Translated_708_residues
MKLTKSHLFPVVLLIVALLLAACTPQAQTPAPTSAPAPTSAPAPTSAPAPTTAPTGSVVSATPGLDIDMILLPKFLGIAV
FDQAYEGAKEAHAELQNKGELIFTGPTAENSVAGQIETLTNAATQGVKAVMLSNNAGDQIAAAAQAAQAAGVKVITWDSP
IPSAQGESVFVAQVDFNETGRVMADMALSILGPEGGEFAILSASPDAANQNAWIAAMKEVLTEPKYANLKLVDTVYGNDQ
SEESYNQALALVDKYPNLKLIMAPTTVGIAAAAKAMTDEGLCDRVKVSGLGLPSEMVSYTLSGCAPQFALWSFTDLGYLT
YHLTYLIASGALQGVEGERFNAGRMGTYTIEKDPTRPNGLRVLMGPFTVYTAENILQEVEAPSGTGNAPITLQPGLQADM
ILLPKFLGIAVFDQAHEGAKEAHAELGNPGQLIFTGPTAENSVAGQIETLTNAATQGVKAVMLSNNAGDQIAAAAQAAQA
AGVKVITWDSPIPSAQGESVFVAQVDFSETGRVMADMALSILGPEGGEFAILSASPDAANQNAWIAAMKQVLTEPKYANL
KLVDTVYGNDQSEESYNQALALVDKYPNLKLIMAPTTVGIAAAAKAMTDEGLCDRVKVSGLGLPAEMASYTLSGCAPQFA
LWSFKDLGYLTYYLAYGIATGQLQGVEGERFNAGRMGTYTIEKDPTRPNGLRVLMGPFTVYTAENVNE
>Mature_708_residues
MKLTKSHLFPVVLLIVALLLAACTPQAQTPAPTSAPAPTSAPAPTSAPAPTTAPTGSVVSATPGLDIDMILLPKFLGIAV
FDQAYEGAKEAHAELQNKGELIFTGPTAENSVAGQIETLTNAATQGVKAVMLSNNAGDQIAAAAQAAQAAGVKVITWDSP
IPSAQGESVFVAQVDFNETGRVMADMALSILGPEGGEFAILSASPDAANQNAWIAAMKEVLTEPKYANLKLVDTVYGNDQ
SEESYNQALALVDKYPNLKLIMAPTTVGIAAAAKAMTDEGLCDRVKVSGLGLPSEMVSYTLSGCAPQFALWSFTDLGYLT
YHLTYLIASGALQGVEGERFNAGRMGTYTIEKDPTRPNGLRVLMGPFTVYTAENILQEVEAPSGTGNAPITLQPGLQADM
ILLPKFLGIAVFDQAHEGAKEAHAELGNPGQLIFTGPTAENSVAGQIETLTNAATQGVKAVMLSNNAGDQIAAAAQAAQA
AGVKVITWDSPIPSAQGESVFVAQVDFSETGRVMADMALSILGPEGGEFAILSASPDAANQNAWIAAMKQVLTEPKYANL
KLVDTVYGNDQSEESYNQALALVDKYPNLKLIMAPTTVGIAAAAKAMTDEGLCDRVKVSGLGLPAEMASYTLSGCAPQFA
LWSFKDLGYLTYYLAYGIATGQLQGVEGERFNAGRMGTYTIEKDPTRPNGLRVLMGPFTVYTAENVNE

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=343, Percent_Identity=26.530612244898, Blast_Score=108, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 74061; Mature: 74061

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTKSHLFPVVLLIVALLLAACTPQAQTPAPTSAPAPTSAPAPTSAPAPTTAPTGSVVS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
ATPGLDIDMILLPKFLGIAVFDQAYEGAKEAHAELQNKGELIFTGPTAENSVAGQIETLT
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
NAATQGVKAVMLSNNAGDQIAAAAQAAQAAGVKVITWDSPIPSAQGESVFVAQVDFNETG
HHHHCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECCCCCC
RVMADMALSILGPEGGEFAILSASPDAANQNAWIAAMKEVLTEPKYANLKLVDTVYGNDQ
HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCC
SEESYNQALALVDKYPNLKLIMAPTTVGIAAAAKAMTDEGLCDRVKVSGLGLPSEMVSYT
CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH
LSGCAPQFALWSFTDLGYLTYHLTYLIASGALQGVEGERFNAGRMGTYTIEKDPTRPNGL
HHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
RVLMGPFTVYTAENILQEVEAPSGTGNAPITLQPGLQADMILLPKFLGIAVFDQAHEGAK
EEEECCEEEHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCHH
EAHAELGNPGQLIFTGPTAENSVAGQIETLTNAATQGVKAVMLSNNAGDQIAAAAQAAQA
HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHH
AGVKVITWDSPIPSAQGESVFVAQVDFSETGRVMADMALSILGPEGGEFAILSASPDAAN
CCEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCC
QNAWIAAMKQVLTEPKYANLKLVDTVYGNDQSEESYNQALALVDKYPNLKLIMAPTTVGI
CCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHH
AAAAKAMTDEGLCDRVKVSGLGLPAEMASYTLSGCAPQFALWSFKDLGYLTYYLAYGIAT
HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC
GQLQGVEGERFNAGRMGTYTIEKDPTRPNGLRVLMGPFTVYTAENVNE
CEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCC
>Mature Secondary Structure
MKLTKSHLFPVVLLIVALLLAACTPQAQTPAPTSAPAPTSAPAPTSAPAPTTAPTGSVVS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
ATPGLDIDMILLPKFLGIAVFDQAYEGAKEAHAELQNKGELIFTGPTAENSVAGQIETLT
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
NAATQGVKAVMLSNNAGDQIAAAAQAAQAAGVKVITWDSPIPSAQGESVFVAQVDFNETG
HHHHCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECCCCCC
RVMADMALSILGPEGGEFAILSASPDAANQNAWIAAMKEVLTEPKYANLKLVDTVYGNDQ
HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCC
SEESYNQALALVDKYPNLKLIMAPTTVGIAAAAKAMTDEGLCDRVKVSGLGLPSEMVSYT
CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH
LSGCAPQFALWSFTDLGYLTYHLTYLIASGALQGVEGERFNAGRMGTYTIEKDPTRPNGL
HHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
RVLMGPFTVYTAENILQEVEAPSGTGNAPITLQPGLQADMILLPKFLGIAVFDQAHEGAK
EEEECCEEEHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCHH
EAHAELGNPGQLIFTGPTAENSVAGQIETLTNAATQGVKAVMLSNNAGDQIAAAAQAAQA
HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHH
AGVKVITWDSPIPSAQGESVFVAQVDFSETGRVMADMALSILGPEGGEFAILSASPDAAN
CCEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCC
QNAWIAAMKQVLTEPKYANLKLVDTVYGNDQSEESYNQALALVDKYPNLKLIMAPTTVGI
CCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHH
AAAAKAMTDEGLCDRVKVSGLGLPAEMASYTLSGCAPQFALWSFKDLGYLTYYLAYGIAT
HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC
GQLQGVEGERFNAGRMGTYTIEKDPTRPNGLRVLMGPFTVYTAENVNE
CEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA