| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is icfG [H]
Identifier: 222525647
GI number: 222525647
Start: 3024647
End: 3026419
Strand: Reverse
Name: icfG [H]
Synonym: Chy400_2398
Alternate gene names: 222525647
Gene position: 3026419-3024647 (Counterclockwise)
Preceding gene: 222525648
Following gene: 222525646
Centisome position: 57.44
GC content: 57.3
Gene sequence:
>1773_bases ATGCCGTCTTCGGAACGACAAAACCGTATCGCTGAATGGTCTGCGTTGCGATTGCTGGCCCAAACACTGAACCAAACGCT GAACCTGCGGTCGGCGCTTGACGCAGCACTCATCCATATTCTTGAGTTGACCGGCCAGGAAGCCGGCTGGATCTATCTCC GTGATGAAGGTGATCAGTTTATTCTGGCAGCGCGCCAGCGATTGCCACCGGCCTTGACCTATCCCGGAACGATCTGGCAG GGTGAATGTGTATGCCAGGAAGCCTGTCGTACCGGCCAGATCCGCCAGGAACCGATACTTATGCCGTGCTCACGATTGCG CGGTGCTGTTGGCGACAAGCGGGGTCTGACACACCATATTTCGGTTGAGTTACGTGATAGCTCTCGCCCGGTGGGTATTC TTAATCTGGCGACGACCCAATGGGCCAAACTGGAAGCTGTTGATCAGCAGCTCATCGCAGCCATCGGTGATCTGTTAGGT ACAGCTATTGCCCGTGCTCACCTCTACGAAGAGTTCAGCGTGCGCCGTGTGCAGGAACGGCGCGCGCTGCTTTCTCTTTC CCAGGAGCTGCTGGTGACGGATGACCTCGAACCGACGATTCAACGGCTGGTACGGATCGGTGCACGCTTGCTGGACGCTG ATGCCTGTGCGTTTATCGAAGCCGATGAAGCAGGTGGACGGGCACTTCTACGCGCATGCCACGGCTGGGAATTGCCCACC GTTAGCGCATGGCCGCTGATTCTTGATGAGAACCACCCGCATCTGTGGTATCTCCCGGAACGAAGCTCACAGCTAGCCGC AGATGCGCTGATGCGCCTGCCCATTTTGCTGCGGCGCCAGAGTTTTCAAGGTCACCTGCTGGCACCGGTCGAACTTGGTG GTGTGCAAATTGGCTTGCTCATGGTGAATACCATCAATCCGCGCAGTTTTCTCGACAGTGAAGCCGAGCTGCTTGGGCTG CTCGCCAGCCAACTGGCTCAGATGATTGATCGTGAGCGCCTGTATCAAGAAGCATTGGCCCGTCAGCGTCTCGAACGGGA ACTCGATCTGGCAAGTGAAATCCAGGCCAGTTTCTTACCCGATTGTTGTCCATTTGTACCCGGCCTCCAGATTGAGGCGT TTTACCAGGCGGCCCGTCAGGTTGGTGGCGACTTCTACGATTTTATTGAGATACCGGCTACCACACCTGATGGTCAGTCT CGTTTTGGGGTTGTCATCGCTGATGTAACTGATAAAGGCGTGCCAGCCGCCCTCTTCATGGCCCTCTCACGCACACTCTT GCGCGCCAGCGCCATTGATGGACGTTCGCCGGTTGCTGTCCTGGAGCGAGCCAATCGCCTGATCCTGGCCGACTCGCGCG CAGGATTGTTCGTCACCTGCTTTTATGCGCTCATCGATCCGGCTACCGGTCGCGTTACCTACGCTAACGGCGGTCACAAC TATCCACTCCTCTACCGTCAGGCAACCGGTCAGGTCATCCCCCTCGCCGCCCAGGGCATTGTCCTGGGGATTATCCCGGA TCCGCACTTCGTACCGGGCGAGATTGTGCTTGACCCCGGTGATATTTTGCTGTTCTACACCGATGGTATCACCGAGGCAA TGAACCCACAACGCGATCTCTTCGGCGATGAGCGGTTGGCGGCAGTCTTGCGCGCCTCTCATCAGCATGCACCGGGTGAC ATCGTTGATGCTGTACTTGCCGCAGTGCGCGAATTTACCGGCGATACGCCCCAAACCGATGATATGACCATGGTCGTGAT CAAGCGCGTGTGA
Upstream 100 bases:
>100_bases GTTATTTTCCGGAATAACCATCAATCGCAGTTACATTCACGCCTCTTCAATGACATGTGTTTGCTAATCTGTGCGGATTC ATAACTTCCGGTGGATTTTT
Downstream 100 bases:
>100_bases TTACCTGCCAGTCCTGCCTGACTTGCACAGATCCGAACAGCCCATTATAATAGGCGATGACATGACGTGGCACGGGGAGA TGACGGAGTGGTTGAACGTG
Product: GAF sensor-containing protein serine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 590; Mature: 589
Protein sequence:
>590_residues MPSSERQNRIAEWSALRLLAQTLNQTLNLRSALDAALIHILELTGQEAGWIYLRDEGDQFILAARQRLPPALTYPGTIWQ GECVCQEACRTGQIRQEPILMPCSRLRGAVGDKRGLTHHISVELRDSSRPVGILNLATTQWAKLEAVDQQLIAAIGDLLG TAIARAHLYEEFSVRRVQERRALLSLSQELLVTDDLEPTIQRLVRIGARLLDADACAFIEADEAGGRALLRACHGWELPT VSAWPLILDENHPHLWYLPERSSQLAADALMRLPILLRRQSFQGHLLAPVELGGVQIGLLMVNTINPRSFLDSEAELLGL LASQLAQMIDRERLYQEALARQRLERELDLASEIQASFLPDCCPFVPGLQIEAFYQAARQVGGDFYDFIEIPATTPDGQS RFGVVIADVTDKGVPAALFMALSRTLLRASAIDGRSPVAVLERANRLILADSRAGLFVTCFYALIDPATGRVTYANGGHN YPLLYRQATGQVIPLAAQGIVLGIIPDPHFVPGEIVLDPGDILLFYTDGITEAMNPQRDLFGDERLAAVLRASHQHAPGD IVDAVLAAVREFTGDTPQTDDMTMVVIKRV
Sequences:
>Translated_590_residues MPSSERQNRIAEWSALRLLAQTLNQTLNLRSALDAALIHILELTGQEAGWIYLRDEGDQFILAARQRLPPALTYPGTIWQ GECVCQEACRTGQIRQEPILMPCSRLRGAVGDKRGLTHHISVELRDSSRPVGILNLATTQWAKLEAVDQQLIAAIGDLLG TAIARAHLYEEFSVRRVQERRALLSLSQELLVTDDLEPTIQRLVRIGARLLDADACAFIEADEAGGRALLRACHGWELPT VSAWPLILDENHPHLWYLPERSSQLAADALMRLPILLRRQSFQGHLLAPVELGGVQIGLLMVNTINPRSFLDSEAELLGL LASQLAQMIDRERLYQEALARQRLERELDLASEIQASFLPDCCPFVPGLQIEAFYQAARQVGGDFYDFIEIPATTPDGQS RFGVVIADVTDKGVPAALFMALSRTLLRASAIDGRSPVAVLERANRLILADSRAGLFVTCFYALIDPATGRVTYANGGHN YPLLYRQATGQVIPLAAQGIVLGIIPDPHFVPGEIVLDPGDILLFYTDGITEAMNPQRDLFGDERLAAVLRASHQHAPGD IVDAVLAAVREFTGDTPQTDDMTMVVIKRV >Mature_589_residues PSSERQNRIAEWSALRLLAQTLNQTLNLRSALDAALIHILELTGQEAGWIYLRDEGDQFILAARQRLPPALTYPGTIWQG ECVCQEACRTGQIRQEPILMPCSRLRGAVGDKRGLTHHISVELRDSSRPVGILNLATTQWAKLEAVDQQLIAAIGDLLGT AIARAHLYEEFSVRRVQERRALLSLSQELLVTDDLEPTIQRLVRIGARLLDADACAFIEADEAGGRALLRACHGWELPTV SAWPLILDENHPHLWYLPERSSQLAADALMRLPILLRRQSFQGHLLAPVELGGVQIGLLMVNTINPRSFLDSEAELLGLL ASQLAQMIDRERLYQEALARQRLERELDLASEIQASFLPDCCPFVPGLQIEAFYQAARQVGGDFYDFIEIPATTPDGQSR FGVVIADVTDKGVPAALFMALSRTLLRASAIDGRSPVAVLERANRLILADSRAGLFVTCFYALIDPATGRVTYANGGHNY PLLYRQATGQVIPLAAQGIVLGIIPDPHFVPGEIVLDPGDILLFYTDGITEAMNPQRDLFGDERLAAVLRASHQHAPGDI VDAVLAAVREFTGDTPQTDDMTMVVIKRV
Specific function: Involved in cross-regulation of inorganic carbon and glucose metabolisms [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003660 - InterPro: IPR001932 - InterPro: IPR010822 [H]
Pfam domain/function: PF00672 HAMP; PF07228 SpoIIE [H]
EC number: NA
Molecular weight: Translated: 64990; Mature: 64858
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSERQNRIAEWSALRLLAQTLNQTLNLRSALDAALIHILELTGQEAGWIYLRDEGDQF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEE ILAARQRLPPALTYPGTIWQGECVCQEACRTGQIRQEPILMPCSRLRGAVGDKRGLTHHI EEEHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEE SVELRDSSRPVGILNLATTQWAKLEAVDQQLIAAIGDLLGTAIARAHLYEEFSVRRVQER EEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RALLSLSQELLVTDDLEPTIQRLVRIGARLLDADACAFIEADEAGGRALLRACHGWELPT HHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCC VSAWPLILDENHPHLWYLPERSSQLAADALMRLPILLRRQSFQGHLLAPVELGGVQIGLL CCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEE MVNTINPRSFLDSEAELLGLLASQLAQMIDRERLYQEALARQRLERELDLASEIQASFLP EEEECCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DCCPFVPGLQIEAFYQAARQVGGDFYDFIEIPATTPDGQSRFGVVIADVTDKGVPAALFM CHHCCCCCCCHHHHHHHHHHHCCCEEEHEECCCCCCCCCCCEEEEEEECCCCCCHHHHHH ALSRTLLRASAIDGRSPVAVLERANRLILADSRAGLFVTCFYALIDPATGRVTYANGGHN HHHHHHHHHHCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCC YPLLYRQATGQVIPLAAQGIVLGIIPDPHFVPGEIVLDPGDILLFYTDGITEAMNPQRDL CCEEEEECCCCEEEEEECCEEEEECCCCCCCCCEEEECCCCEEEEEECCCHHHCCCHHHH FGDERLAAVLRASHQHAPGDIVDAVLAAVREFTGDTPQTDDMTMVVIKRV CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC >Mature Secondary Structure PSSERQNRIAEWSALRLLAQTLNQTLNLRSALDAALIHILELTGQEAGWIYLRDEGDQF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEE ILAARQRLPPALTYPGTIWQGECVCQEACRTGQIRQEPILMPCSRLRGAVGDKRGLTHHI EEEHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEE SVELRDSSRPVGILNLATTQWAKLEAVDQQLIAAIGDLLGTAIARAHLYEEFSVRRVQER EEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RALLSLSQELLVTDDLEPTIQRLVRIGARLLDADACAFIEADEAGGRALLRACHGWELPT HHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCC VSAWPLILDENHPHLWYLPERSSQLAADALMRLPILLRRQSFQGHLLAPVELGGVQIGLL CCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEE MVNTINPRSFLDSEAELLGLLASQLAQMIDRERLYQEALARQRLERELDLASEIQASFLP EEEECCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DCCPFVPGLQIEAFYQAARQVGGDFYDFIEIPATTPDGQSRFGVVIADVTDKGVPAALFM CHHCCCCCCCHHHHHHHHHHHCCCEEEHEECCCCCCCCCCCEEEEEEECCCCCCHHHHHH ALSRTLLRASAIDGRSPVAVLERANRLILADSRAGLFVTCFYALIDPATGRVTYANGGHN HHHHHHHHHHCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCC YPLLYRQATGQVIPLAAQGIVLGIIPDPHFVPGEIVLDPGDILLFYTDGITEAMNPQRDL CCEEEEECCCCEEEEEECCEEEEECCCCCCCCCEEEECCCCEEEEEECCCHHHCCCHHHH FGDERLAAVLRASHQHAPGDIVDAVLAAVREFTGDTPQTDDMTMVVIKRV CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8075401; 8905231 [H]