| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
Click here to switch to the map view.
The map label for this gene is aroE [H]
Identifier: 222525353
GI number: 222525353
Start: 2668179
End: 2669036
Strand: Reverse
Name: aroE [H]
Synonym: Chy400_2098
Alternate gene names: 222525353
Gene position: 2669036-2668179 (Counterclockwise)
Preceding gene: 222525354
Following gene: 222525352
Centisome position: 50.66
GC content: 58.97
Gene sequence:
>858_bases GTGTCAGTAGGATCAACCACTACAGCAGAGATTTTATTGATCGGCGACCCGGTAGCACACTCACGTTCACCGGCGATGCA CAATGCGGCACTGGCAGCATTAGGGATTGCAGCTCGCTATCGGGCAGTACAGACTACTGCTGCTGAATTACCTGATCGTC TCGCCGCGCTACGTCAGCCTCACTTCCTGGGTGCGAACGTGACGTTGCCACACAAACAGGCGGTCATCCCCTTACTCGAC GAGATCGAACCGGCAGCAGCGCGGATTGGGGCGGTGAATACGATTGTGCGTCAGCCTGATGGCAGGTTGTTGGGTGTGAA CACGGATGCTCCCGGTTTACTGGCCGATCTGGCGGCTGCCGGTTGGACACCGGTCGAACAAGAGGTTGTCATCCTGGGTG CATCAGGGGCAGCGCGTGCTGCCACTTTCGCACTGGCTGATGCCGGAGTGAACGGAATCACGATTGTTAATCGGAGCCTG ATGCGTGCTATTGATCTGGCCGCAGCCGCAGCCGCCAATCAGCCGGCTCTGCGTATTCGTGCCTTGTCCCTGAGCGATCC GGCAGTAACAGATGTGATTGCACATTGCACGCTTTTGATCAATGCCACCGCCCTGGGATGGCACGATGACGAAACGCCTA TCGCTGACCCACCGGTAGGGGCACATTGTCTGGTCTACGATATGGTCTATCGAGAAACAGCTCTCTTACGCGCCGCAGTC GCTCGCGGCGCACGGGTGCGCGATGGGCGTGGGATGCTGGTTGAGCAGGGCGCACTGGCTTTTGAGCGTTGGACAGGCCG TCCGGCGCCACGTGAAATTATGTGGCAAGCCGCTTTTGGGGTGGAGCACGGGCCATGA
Upstream 100 bases:
>100_bases CACCGTATCTCTTCTTCGTCGCCAGTTGTGAGCGCGATGGTTCGCATAAGTTCGCTACTACTATCGAAGAATTTCGTGTC TATGAAGCGGAGTGGCTGGC
Downstream 100 bases:
>100_bases TGGATCTCATCGTTGTGGTAATCGGTCTGGTGCTGGGCAGTCTGCTGAATGTGATGATCATTCGCCTGCCACGAGAGCGA CGGCTCATCGGCTGGCCGCG
Product: shikimate 5-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSVGSTTTAEILLIGDPVAHSRSPAMHNAALAALGIAARYRAVQTTAAELPDRLAALRQPHFLGANVTLPHKQAVIPLLD EIEPAAARIGAVNTIVRQPDGRLLGVNTDAPGLLADLAAAGWTPVEQEVVILGASGAARAATFALADAGVNGITIVNRSL MRAIDLAAAAAANQPALRIRALSLSDPAVTDVIAHCTLLINATALGWHDDETPIADPPVGAHCLVYDMVYRETALLRAAV ARGARVRDGRGMLVEQGALAFERWTGRPAPREIMWQAAFGVEHGP
Sequences:
>Translated_285_residues MSVGSTTTAEILLIGDPVAHSRSPAMHNAALAALGIAARYRAVQTTAAELPDRLAALRQPHFLGANVTLPHKQAVIPLLD EIEPAAARIGAVNTIVRQPDGRLLGVNTDAPGLLADLAAAGWTPVEQEVVILGASGAARAATFALADAGVNGITIVNRSL MRAIDLAAAAAANQPALRIRALSLSDPAVTDVIAHCTLLINATALGWHDDETPIADPPVGAHCLVYDMVYRETALLRAAV ARGARVRDGRGMLVEQGALAFERWTGRPAPREIMWQAAFGVEHGP >Mature_284_residues SVGSTTTAEILLIGDPVAHSRSPAMHNAALAALGIAARYRAVQTTAAELPDRLAALRQPHFLGANVTLPHKQAVIPLLDE IEPAAARIGAVNTIVRQPDGRLLGVNTDAPGLLADLAAAGWTPVEQEVVILGASGAARAATFALADAGVNGITIVNRSLM RAIDLAAAAAANQPALRIRALSLSDPAVTDVIAHCTLLINATALGWHDDETPIADPPVGAHCLVYDMVYRETALLRAAVA RGARVRDGRGMLVEQGALAFERWTGRPAPREIMWQAAFGVEHGP
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1787983, Length=287, Percent_Identity=33.4494773519164, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI1789675, Length=257, Percent_Identity=36.1867704280156, Blast_Score=122, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6320332, Length=297, Percent_Identity=26.9360269360269, Blast_Score=102, Evalue=7e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR011342 - InterPro: IPR013708 - InterPro: IPR022893 - InterPro: IPR006151 [H]
Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N [H]
EC number: =1.1.1.25 [H]
Molecular weight: Translated: 29750; Mature: 29619
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVGSTTTAEILLIGDPVAHSRSPAMHNAALAALGIAARYRAVQTTAAELPDRLAALRQP CCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC HFLGANVTLPHKQAVIPLLDEIEPAAARIGAVNTIVRQPDGRLLGVNTDAPGLLADLAAA CEECCCEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHC GWTPVEQEVVILGASGAARAATFALADAGVNGITIVNRSLMRAIDLAAAAAANQPALRIR CCCCCCCEEEEEECCCCHHHHHEEHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEE ALSLSDPAVTDVIAHCTLLINATALGWHDDETPIADPPVGAHCLVYDMVYRETALLRAAV EEECCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH ARGARVRDGRGMLVEQGALAFERWTGRPAPREIMWQAAFGVEHGP HCCCEEECCCCEEEECCCHHHHHHCCCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure SVGSTTTAEILLIGDPVAHSRSPAMHNAALAALGIAARYRAVQTTAAELPDRLAALRQP CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC HFLGANVTLPHKQAVIPLLDEIEPAAARIGAVNTIVRQPDGRLLGVNTDAPGLLADLAAA CEECCCEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHC GWTPVEQEVVILGASGAARAATFALADAGVNGITIVNRSLMRAIDLAAAAAANQPALRIR CCCCCCCEEEEEECCCCHHHHHEEHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEE ALSLSDPAVTDVIAHCTLLINATALGWHDDETPIADPPVGAHCLVYDMVYRETALLRAAV EEECCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH ARGARVRDGRGMLVEQGALAFERWTGRPAPREIMWQAAFGVEHGP HCCCEEECCCCEEEECCCHHHHHHCCCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA