| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is pbpG [H]
Identifier: 222525312
GI number: 222525312
Start: 2604313
End: 2606829
Strand: Direct
Name: pbpG [H]
Synonym: Chy400_2054
Alternate gene names: 222525312
Gene position: 2604313-2606829 (Clockwise)
Preceding gene: 222525310
Following gene: 222525315
Centisome position: 49.43
GC content: 58.2
Gene sequence:
>2517_bases ATGACACGGCGTCCTCGTCCACGTTTACCACGTTTTCGACGGCGAAAGCCGTTACCGCCACCCTGGCCGATTCGGGGCCT GCTGATTGTTGGGCGTTGGCTCAATCGGCTCTTTTTTACGCTGTTGGTGTTGGTATTGATGGGAATGATGGGGCTGATGG GCCTGTATCTCTACTACGGTCGCGATTTGCCGCCGCCGGAGCTGATCGATCAGTACCGTAGCTTCGAGAATACGCGCATC TACGCCCGCGATGGCGTTACGCTGTTGTACGAGGTGATTGGGCCAGGGGTACGGGTGCCAGTAGCGCTGGAGCGTATTCC CCAGATTTTACGCGATGCAACGGTAGCAGTTGAAGATGCGAATTTCTATACCAATCCTGGGGTGGATTTGCCGAGTATTG TGCGGGCTTTCTGGCAAAATGTGAACGCTGGTGAGACCGTTTCAGGCGCCAGTACGATTACTATGCAGTTGGTGCGGGCA ATTTTACTGACGCCTGAAGAAGCTCAGCAGCAGACAATTGAACGTAAAATTCGCGAAGCAATTCTGGCGATTCGGGTTGG GCAGGAGTATAGTAAGGAACAGATACTCTCGCTCTATCTGAACGAGGTGTATTACGGTGCGCAGGCGTATGGGGTTGAGG CGGCAGCCCAACGTTACTTTGGTAAGCATGTCTGGGAATTGAGTCGCGGTGAGGCAACCCTGCTGGCCGGTTTGCCGCAG TCGCCCTCGAACTACAATCCGTTTGAGAACCTGCCATCGGCGCGTGCCCGTCAGCGCATTGTGCTGAATCAGATGGTTGA TGCCGGTTTCATCAGCCCCGCCGAAGCCGAGTCGATCTTTGCCGAGCCGATTCGGTTAGTGCGCCCCACCGTTTCTATTC AGTCGCCCCATTTTGTCTTTTACGTCTACGACCTGCTCGTCGCGCAATTCGGCGAGGAGATGGTGAATCGTGGCGGTTTG CGCGTGATCACCACGCTTGACCCGTTTTGGCAGGCGCAGGCCGAACAGGTTGCCGCCGAACAGATCGCAACCCTGCGCGC CCGCAATGCCAGCAATGCCGGTGTGGTCATGCTCGCCCCTGATGGTCAGATTCTGGCAATGGTGGGGAGTGTTGATTATA ACGCGCCTGATGGTCAGGTGAATGTAACCCTGGCCCTCCGTCAGCCTGGATCGGCGTTGAAGCCGTTTATTTACGCTGCT GCCTTGCAGCGGGGGTGGACAGCGGCAACCGTACTCTGGGATGTACCGACGCGCTGGCAGATGAATGGGGTGGTGTACGA GCCGCGCAATTATGATGGCCGCTTCCGCGGGCCGGTGCGTCTGCGCCTGGCACTGGCGAATTCGCTCAATATTCCGGCGG TGAAGGCGCTGGAGTTTGTCGGCGTAGAAACGTTTGTCGATTTAATGAGTCAGTTTGGGGTGAGCAGTTTTACCGATCCC AGCCGCTACGGGCTGGCAATGGCGTTAGGGAGTAACGAAGTGCGCCTGCTGGAGCTGACCGGCGCTTATGCTGGACTACA GGCAGGGGGGCGCCAGCTCCGACCGGTAGCTATTTTGCGCGTGACAAATAGTCGGGGTGAGATGTTGCATACCTGGCAGC CACCCCCTGTTAAGCCGTTGCTTGGCCCGCAGAGCGAACAAATTGCATTTCTGATCAGTGATATTCTGAGCGACAATGCG GCGCGCCGGCTGGTCTTTGGGCGCAACAATGTGATGGAATTGCCGGGTATTCAGGCCGCAGTGAAGACCGGTACCAGTAA TGATTATCGCGATTCCTGGGCAATTGGCTATACCAGTGCTGTGGTAATCGGGGTATGGGTGGGGAATAACGATAATCAGC CGATGGCGGAAGTGGCCGGTGCTAACGGCGCCGGTCTGATCTGGCGTGAGTTGATGTTGCGCTACCACGCCAATCGGGAG GCAAAGTCCTTCATACCGCCTGACGGAGTCGTCGAACAGCCGGTGTGTGCCGAGACCGGTGGCCCCCCTACTCCGGAGTG TCCCCAGGTCATTACCGAACGTTTCGTTGCCGGTACCGGGCCGGTGAGCAATATCACCTATCAAACGGTGCGTGTAGCCG GTGATGGCTCGTGTCTGGCAACGACATATACCCCGCCCGAAGAGGTGCGCCTGGAGACGTTCCCCGTCTACCCTACCGAA GTCGCCGATTGGGCGCGCCGCAATGGCCGGACACCACCGACCGGATATTGTCCGCCACCCCGCGAGCCGGATCGCGCTGT TGCCCTGCTCGACCTCGCCGAGAATAGTGTGATTACCAATACCCTGGTCTTTATCCAGGGTACTGCTCGCGGTCCCTTTA TTCTTGACATTGGCAGCGGTGGCGATCCAACCGACTGGCAGGTGCTGGGGCAGAGCAGCCAGCCGGTTGAGCAGGGGTTG CTTGGGATGTGGAATGCCGGTGCCTGGCCAACCGGTACGTATACCGTTCGGCTACGAGTCACCCTGGCCGATGGGGCCGT GATCGAAGAGCGCCGACAGGTGACCTACGCGCCGTGA
Upstream 100 bases:
>100_bases CCAGCTATGACATTTTTTTCACTACAAGCCGTTGCAAATCGCGCTATAGTACTATGAGGAATGGATCATTCGTCTGGATA CGTTATCGGTATTGCACCCT
Downstream 100 bases:
>100_bases CTGGCGACCAGAGCCTGTTGCCAGGCCGCTTCAACCTGAGCACGTGTACGCGCTTGCGAACCGCTGTTGTCAATAATGAC ATGGGCGCGGCTGAAGCGAC
Product: penicillin-binding protein, 1A family
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 838; Mature: 837
Protein sequence:
>838_residues MTRRPRPRLPRFRRRKPLPPPWPIRGLLIVGRWLNRLFFTLLVLVLMGMMGLMGLYLYYGRDLPPPELIDQYRSFENTRI YARDGVTLLYEVIGPGVRVPVALERIPQILRDATVAVEDANFYTNPGVDLPSIVRAFWQNVNAGETVSGASTITMQLVRA ILLTPEEAQQQTIERKIREAILAIRVGQEYSKEQILSLYLNEVYYGAQAYGVEAAAQRYFGKHVWELSRGEATLLAGLPQ SPSNYNPFENLPSARARQRIVLNQMVDAGFISPAEAESIFAEPIRLVRPTVSIQSPHFVFYVYDLLVAQFGEEMVNRGGL RVITTLDPFWQAQAEQVAAEQIATLRARNASNAGVVMLAPDGQILAMVGSVDYNAPDGQVNVTLALRQPGSALKPFIYAA ALQRGWTAATVLWDVPTRWQMNGVVYEPRNYDGRFRGPVRLRLALANSLNIPAVKALEFVGVETFVDLMSQFGVSSFTDP SRYGLAMALGSNEVRLLELTGAYAGLQAGGRQLRPVAILRVTNSRGEMLHTWQPPPVKPLLGPQSEQIAFLISDILSDNA ARRLVFGRNNVMELPGIQAAVKTGTSNDYRDSWAIGYTSAVVIGVWVGNNDNQPMAEVAGANGAGLIWRELMLRYHANRE AKSFIPPDGVVEQPVCAETGGPPTPECPQVITERFVAGTGPVSNITYQTVRVAGDGSCLATTYTPPEEVRLETFPVYPTE VADWARRNGRTPPTGYCPPPREPDRAVALLDLAENSVITNTLVFIQGTARGPFILDIGSGGDPTDWQVLGQSSQPVEQGL LGMWNAGAWPTGTYTVRLRVTLADGAVIEERRQVTYAP
Sequences:
>Translated_838_residues MTRRPRPRLPRFRRRKPLPPPWPIRGLLIVGRWLNRLFFTLLVLVLMGMMGLMGLYLYYGRDLPPPELIDQYRSFENTRI YARDGVTLLYEVIGPGVRVPVALERIPQILRDATVAVEDANFYTNPGVDLPSIVRAFWQNVNAGETVSGASTITMQLVRA ILLTPEEAQQQTIERKIREAILAIRVGQEYSKEQILSLYLNEVYYGAQAYGVEAAAQRYFGKHVWELSRGEATLLAGLPQ SPSNYNPFENLPSARARQRIVLNQMVDAGFISPAEAESIFAEPIRLVRPTVSIQSPHFVFYVYDLLVAQFGEEMVNRGGL RVITTLDPFWQAQAEQVAAEQIATLRARNASNAGVVMLAPDGQILAMVGSVDYNAPDGQVNVTLALRQPGSALKPFIYAA ALQRGWTAATVLWDVPTRWQMNGVVYEPRNYDGRFRGPVRLRLALANSLNIPAVKALEFVGVETFVDLMSQFGVSSFTDP SRYGLAMALGSNEVRLLELTGAYAGLQAGGRQLRPVAILRVTNSRGEMLHTWQPPPVKPLLGPQSEQIAFLISDILSDNA ARRLVFGRNNVMELPGIQAAVKTGTSNDYRDSWAIGYTSAVVIGVWVGNNDNQPMAEVAGANGAGLIWRELMLRYHANRE AKSFIPPDGVVEQPVCAETGGPPTPECPQVITERFVAGTGPVSNITYQTVRVAGDGSCLATTYTPPEEVRLETFPVYPTE VADWARRNGRTPPTGYCPPPREPDRAVALLDLAENSVITNTLVFIQGTARGPFILDIGSGGDPTDWQVLGQSSQPVEQGL LGMWNAGAWPTGTYTVRLRVTLADGAVIEERRQVTYAP >Mature_837_residues TRRPRPRLPRFRRRKPLPPPWPIRGLLIVGRWLNRLFFTLLVLVLMGMMGLMGLYLYYGRDLPPPELIDQYRSFENTRIY ARDGVTLLYEVIGPGVRVPVALERIPQILRDATVAVEDANFYTNPGVDLPSIVRAFWQNVNAGETVSGASTITMQLVRAI LLTPEEAQQQTIERKIREAILAIRVGQEYSKEQILSLYLNEVYYGAQAYGVEAAAQRYFGKHVWELSRGEATLLAGLPQS PSNYNPFENLPSARARQRIVLNQMVDAGFISPAEAESIFAEPIRLVRPTVSIQSPHFVFYVYDLLVAQFGEEMVNRGGLR VITTLDPFWQAQAEQVAAEQIATLRARNASNAGVVMLAPDGQILAMVGSVDYNAPDGQVNVTLALRQPGSALKPFIYAAA LQRGWTAATVLWDVPTRWQMNGVVYEPRNYDGRFRGPVRLRLALANSLNIPAVKALEFVGVETFVDLMSQFGVSSFTDPS RYGLAMALGSNEVRLLELTGAYAGLQAGGRQLRPVAILRVTNSRGEMLHTWQPPPVKPLLGPQSEQIAFLISDILSDNAA RRLVFGRNNVMELPGIQAAVKTGTSNDYRDSWAIGYTSAVVIGVWVGNNDNQPMAEVAGANGAGLIWRELMLRYHANREA KSFIPPDGVVEQPVCAETGGPPTPECPQVITERFVAGTGPVSNITYQTVRVAGDGSCLATTYTPPEEVRLETFPVYPTEV ADWARRNGRTPPTGYCPPPREPDRAVALLDLAENSVITNTLVFIQGTARGPFILDIGSGGDPTDWQVLGQSSQPVEQGLL GMWNAGAWPTGTYTVRLRVTLADGAVIEERRQVTYAP
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG4953
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein PbpC
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1788867, Length=686, Percent_Identity=30.3206997084548, Blast_Score=221, Evalue=1e-58, Organism=Escherichia coli, GI1786343, Length=567, Percent_Identity=31.0405643738977, Blast_Score=197, Evalue=3e-51, Organism=Escherichia coli, GI87082258, Length=320, Percent_Identity=35, Blast_Score=180, Evalue=4e-46, Organism=Escherichia coli, GI1789601, Length=169, Percent_Identity=34.9112426035503, Blast_Score=88, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.- [C]
Molecular weight: Translated: 92328; Mature: 92197
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRPRPRLPRFRRRKPLPPPWPIRGLLIVGRWLNRLFFTLLVLVLMGMMGLMGLYLYYG CCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RDLPPPELIDQYRSFENTRIYARDGVTLLYEVIGPGVRVPVALERIPQILRDATVAVEDA CCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEECC NFYTNPGVDLPSIVRAFWQNVNAGETVSGASTITMQLVRAILLTPEEAQQQTIERKIREA CCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH ILAIRVGQEYSKEQILSLYLNEVYYGAQAYGVEAAAQRYFGKHVWELSRGEATLLAGLPQ HHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC SPSNYNPFENLPSARARQRIVLNQMVDAGFISPAEAESIFAEPIRLVRPTVSIQSPHFVF CCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCHH YVYDLLVAQFGEEMVNRGGLRVITTLDPFWQAQAEQVAAEQIATLRARNASNAGVVMLAP HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC DGQILAMVGSVDYNAPDGQVNVTLALRQPGSALKPFIYAAALQRGWTAATVLWDVPTRWQ CCCEEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE MNGVVYEPRNYDGRFRGPVRLRLALANSLNIPAVKALEFVGVETFVDLMSQFGVSSFTDP ECCEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC SRYGLAMALGSNEVRLLELTGAYAGLQAGGRQLRPVAILRVTNSRGEMLHTWQPPPVKPL HHCCEEEEECCCCEEEEEECCCHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCC LGPQSEQIAFLISDILSDNAARRLVFGRNNVMELPGIQAAVKTGTSNDYRDSWAIGYTSA CCCCCHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCHHHHCCCCCCCCCCCEEECEEEE VVIGVWVGNNDNQPMAEVAGANGAGLIWRELMLRYHANREAKSFIPPDGVVEQPVCAETG EEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC GPPTPECPQVITERFVAGTGPVSNITYQTVRVAGDGSCLATTYTPPEEVRLETFPVYPTE CCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCHHHCEEEECCCCCHH VADWARRNGRTPPTGYCPPPREPDRAVALLDLAENSVITNTLVFIQGTARGPFILDIGSG HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCEEEEECCC GDPTDWQVLGQSSQPVEQGLLGMWNAGAWPTGTYTVRLRVTLADGAVIEERRQVTYAP CCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCHHHHCCCCCCCC >Mature Secondary Structure TRRPRPRLPRFRRRKPLPPPWPIRGLLIVGRWLNRLFFTLLVLVLMGMMGLMGLYLYYG CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RDLPPPELIDQYRSFENTRIYARDGVTLLYEVIGPGVRVPVALERIPQILRDATVAVEDA CCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEECC NFYTNPGVDLPSIVRAFWQNVNAGETVSGASTITMQLVRAILLTPEEAQQQTIERKIREA CCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH ILAIRVGQEYSKEQILSLYLNEVYYGAQAYGVEAAAQRYFGKHVWELSRGEATLLAGLPQ HHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC SPSNYNPFENLPSARARQRIVLNQMVDAGFISPAEAESIFAEPIRLVRPTVSIQSPHFVF CCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCHH YVYDLLVAQFGEEMVNRGGLRVITTLDPFWQAQAEQVAAEQIATLRARNASNAGVVMLAP HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC DGQILAMVGSVDYNAPDGQVNVTLALRQPGSALKPFIYAAALQRGWTAATVLWDVPTRWQ CCCEEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE MNGVVYEPRNYDGRFRGPVRLRLALANSLNIPAVKALEFVGVETFVDLMSQFGVSSFTDP ECCEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC SRYGLAMALGSNEVRLLELTGAYAGLQAGGRQLRPVAILRVTNSRGEMLHTWQPPPVKPL HHCCEEEEECCCCEEEEEECCCHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCC LGPQSEQIAFLISDILSDNAARRLVFGRNNVMELPGIQAAVKTGTSNDYRDSWAIGYTSA CCCCCHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCHHHHCCCCCCCCCCCEEECEEEE VVIGVWVGNNDNQPMAEVAGANGAGLIWRELMLRYHANREAKSFIPPDGVVEQPVCAETG EEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC GPPTPECPQVITERFVAGTGPVSNITYQTVRVAGDGSCLATTYTPPEEVRLETFPVYPTE CCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCHHHCEEEECCCCCHH VADWARRNGRTPPTGYCPPPREPDRAVALLDLAENSVITNTLVFIQGTARGPFILDIGSG HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCEEEEECCC GDPTDWQVLGQSSQPVEQGLLGMWNAGAWPTGTYTVRLRVTLADGAVIEERRQVTYAP CCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]