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The map label for this gene is lytR [H]

Identifier: 222525173

GI number: 222525173

Start: 2415384

End: 2416781

Strand: Reverse

Name: lytR [H]

Synonym: Chy400_1911

Alternate gene names: 222525173

Gene position: 2416781-2415384 (Counterclockwise)

Preceding gene: 222525174

Following gene: 222525172

Centisome position: 45.87

GC content: 58.08

Gene sequence:

>1398_bases
ATGGAGCGACCACGGCGCACTGAACAAAAACAGCGACGCATATCGCCCCAGGGCAGTGCACGCGAGCGGGTTGCCTTGCT
GCGTGCCCAGCGCCGACGACGGTGGCGGTGGTTGTGGGTAACAGGTGGTATCGTGCTGTTGCTCTTGCTGGCGCTGGCCG
GTGCCGGCTGGCTATGGCAAACCGTTGCCGGAATGCGGCAACCCGATCTACGACCTGCCGGAACAGTGGTGCCGACGAAC
GCAGTGTTTCGTCAGCCGTTTACCGTATTATTGCTGGGAGTTGATCGTCGCCCTGATGGCAGCGAAGGCGTTCGCAGCGA
TACCCTGATCCTGGCTTACGTGCATCCGACAGAACGTTGGGCCAGTTTGCTCTCGATCCCACGCGATACGGTTGCCACAA
TTCCCGGCCTGGGTGAGCAGAAGATCAACGTCGCGTATAGTTATGGTTATCAGCACGCGACCGAACTCTACGGCGCAGAT
GCCGATCCGGCAGCCGCCGGGGCAGCGCTGACCGCCGAAACGGTGGCTCAGTTCCTGAACATCCCGGTTGATTATGTTGC
TCAGATTGATTTTGCCGGTTTCGAGCGCTTCATTGATAAACTCGGTGGGGTAGTAATTGATGTTCCGTACCCGGTGCTCG
ATAGTAGTTTTCCAACCGCAGATTACGGCTACGAACGGATCTTCATTCCTGCCGGTTTACAGGTGATCAATGGTGAGACA
GCGCTGAAGTATGCACGGTCACGCCACGGATCGAGCGACTTCGAGCGCGCCCGACGGCAGCAGATGCTGTTGCGCGCCGT
GCTGGAAACCGTCCGCACGCGTGGAGTGTTTGAACAGGCCAGCTTGTTAACAGCATTGATTGACGAAGCCCGGCGTAGTG
TGAAGACGACGCTGCCTATCGATGATCCAGCGGCCCTGCGTGAACTGATGACGCTGGCCCAGACGATTGACAGTCAGCGT
ATCGCTACCTTCAGTATCAACCCACGCGAAGTGGCGATTGTCGCTGAAATTGGTTCAGACATCTACTGGAACCGCCGGGA
TGTAGCAGCGATGGTCGAACGATTGCGGGCCGGGCCACGGATCAATGCTGAACAGGCGCGGATACAGGTGTTGAATGGCA
CGCCGGTGAATGGATTGGCAGCCCGGATTAGTCGGGCACTTGCTAACGCCAATTTTCAGACCCTTCCGGCGGCTAACACG
GATCGGCGAGAAACAACCATTCTGATCGACTATACCGGTAAACCGGCGACACTGGCCCGTCTTGCCGGGCATCTTGGGTT
ACCGGCCAGCCAGGTCTTTGCCTCACCACCAGACGATGCGCCCCCGCAACCATTGGGAGCGGATATTGTGTTGTTGATCG
GACAGGATTACGATCCAGCCTGGGCAATGGCACCATAA

Upstream 100 bases:

>100_bases
TACGACGAATGACGGTCAGTGCACCGATTATTGCGACCGGTCAATACGAACCTCCCGATGAACCGGAAATGGTTGATGAG
TAGGTACAGGTTAGATAGGG

Downstream 100 bases:

>100_bases
CAGTACGTTCTTGTCAAGCAATGACCTGGGATTGAGCATATTATATGCTGACTGAAACGACACTCTGGCTCTTACTCCTC
TTTATCTTGCTGGCACCACT

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MERPRRTEQKQRRISPQGSARERVALLRAQRRRRWRWLWVTGGIVLLLLLALAGAGWLWQTVAGMRQPDLRPAGTVVPTN
AVFRQPFTVLLLGVDRRPDGSEGVRSDTLILAYVHPTERWASLLSIPRDTVATIPGLGEQKINVAYSYGYQHATELYGAD
ADPAAAGAALTAETVAQFLNIPVDYVAQIDFAGFERFIDKLGGVVIDVPYPVLDSSFPTADYGYERIFIPAGLQVINGET
ALKYARSRHGSSDFERARRQQMLLRAVLETVRTRGVFEQASLLTALIDEARRSVKTTLPIDDPAALRELMTLAQTIDSQR
IATFSINPREVAIVAEIGSDIYWNRRDVAAMVERLRAGPRINAEQARIQVLNGTPVNGLAARISRALANANFQTLPAANT
DRRETTILIDYTGKPATLARLAGHLGLPASQVFASPPDDAPPQPLGADIVLLIGQDYDPAWAMAP

Sequences:

>Translated_465_residues
MERPRRTEQKQRRISPQGSARERVALLRAQRRRRWRWLWVTGGIVLLLLLALAGAGWLWQTVAGMRQPDLRPAGTVVPTN
AVFRQPFTVLLLGVDRRPDGSEGVRSDTLILAYVHPTERWASLLSIPRDTVATIPGLGEQKINVAYSYGYQHATELYGAD
ADPAAAGAALTAETVAQFLNIPVDYVAQIDFAGFERFIDKLGGVVIDVPYPVLDSSFPTADYGYERIFIPAGLQVINGET
ALKYARSRHGSSDFERARRQQMLLRAVLETVRTRGVFEQASLLTALIDEARRSVKTTLPIDDPAALRELMTLAQTIDSQR
IATFSINPREVAIVAEIGSDIYWNRRDVAAMVERLRAGPRINAEQARIQVLNGTPVNGLAARISRALANANFQTLPAANT
DRRETTILIDYTGKPATLARLAGHLGLPASQVFASPPDDAPPQPLGADIVLLIGQDYDPAWAMAP
>Mature_465_residues
MERPRRTEQKQRRISPQGSARERVALLRAQRRRRWRWLWVTGGIVLLLLLALAGAGWLWQTVAGMRQPDLRPAGTVVPTN
AVFRQPFTVLLLGVDRRPDGSEGVRSDTLILAYVHPTERWASLLSIPRDTVATIPGLGEQKINVAYSYGYQHATELYGAD
ADPAAAGAALTAETVAQFLNIPVDYVAQIDFAGFERFIDKLGGVVIDVPYPVLDSSFPTADYGYERIFIPAGLQVINGET
ALKYARSRHGSSDFERARRQQMLLRAVLETVRTRGVFEQASLLTALIDEARRSVKTTLPIDDPAALRELMTLAQTIDSQR
IATFSINPREVAIVAEIGSDIYWNRRDVAAMVERLRAGPRINAEQARIQVLNGTPVNGLAARISRALANANFQTLPAANT
DRRETTILIDYTGKPATLARLAGHLGLPASQVFASPPDDAPPQPLGADIVLLIGQDYDPAWAMAP

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 51126; Mature: 51126

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERPRRTEQKQRRISPQGSARERVALLRAQRRRRWRWLWVTGGIVLLLLLALAGAGWLWQ
CCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCHHHH
TVAGMRQPDLRPAGTVVPTNAVFRQPFTVLLLGVDRRPDGSEGVRSDTLILAYVHPTERW
HHHCCCCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHH
ASLLSIPRDTVATIPGLGEQKINVAYSYGYQHATELYGADADPAAAGAALTAETVAQFLN
HHHHHCCCHHHHHCCCCCCCEEEEEEECCCHHHHHHCCCCCCCHHCCHHHHHHHHHHHHC
IPVDYVAQIDFAGFERFIDKLGGVVIDVPYPVLDSSFPTADYGYERIFIPAGLQVINGET
CCHHHHHHCCHHHHHHHHHHHCCEEEECCCHHHCCCCCCCCCCCCEEEEECCCEEECCHH
ALKYARSRHGSSDFERARRQQMLLRAVLETVRTRGVFEQASLLTALIDEARRSVKTTLPI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
DDPAALRELMTLAQTIDSQRIATFSINPREVAIVAEIGSDIYWNRRDVAAMVERLRAGPR
CCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
INAEQARIQVLNGTPVNGLAARISRALANANFQTLPAANTDRRETTILIDYTGKPATLAR
CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEEEECCCCHHHHH
LAGHLGLPASQVFASPPDDAPPQPLGADIVLLIGQDYDPAWAMAP
HHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MERPRRTEQKQRRISPQGSARERVALLRAQRRRRWRWLWVTGGIVLLLLLALAGAGWLWQ
CCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCHHHH
TVAGMRQPDLRPAGTVVPTNAVFRQPFTVLLLGVDRRPDGSEGVRSDTLILAYVHPTERW
HHHCCCCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHH
ASLLSIPRDTVATIPGLGEQKINVAYSYGYQHATELYGADADPAAAGAALTAETVAQFLN
HHHHHCCCHHHHHCCCCCCCEEEEEEECCCHHHHHHCCCCCCCHHCCHHHHHHHHHHHHC
IPVDYVAQIDFAGFERFIDKLGGVVIDVPYPVLDSSFPTADYGYERIFIPAGLQVINGET
CCHHHHHHCCHHHHHHHHHHHCCEEEECCCHHHCCCCCCCCCCCCEEEEECCCEEECCHH
ALKYARSRHGSSDFERARRQQMLLRAVLETVRTRGVFEQASLLTALIDEARRSVKTTLPI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
DDPAALRELMTLAQTIDSQRIATFSINPREVAIVAEIGSDIYWNRRDVAAMVERLRAGPR
CCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
INAEQARIQVLNGTPVNGLAARISRALANANFQTLPAANTDRRETTILIDYTGKPATLAR
CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEEEECCCCHHHHH
LAGHLGLPASQVFASPPDDAPPQPLGADIVLLIGQDYDPAWAMAP
HHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]