Click here to switch to the map view.

The map label for this gene is rfbA [H]

Identifier: 222525144

GI number: 222525144

Start: 2377746

End: 2379647

Strand: Direct

Name: rfbA [H]

Synonym: Chy400_1882

Alternate gene names: 222525144

Gene position: 2377746-2379647 (Clockwise)

Preceding gene: 222525143

Following gene: 222525145

Centisome position: 45.13

GC content: 57.94

Gene sequence:

>1902_bases
GTGGCCAACACGATCAAGCAGCCGCTAAACCGGGCGACAGGCTGGCGTGCAATCGGCGATCTGCTAACGAGGCAACGCGG
AGCGCTACGCTTGTACCAGTGGTTGTGGCTGGTATTGTGTATTGTGGGCGCGCTGAGTATCGCCCTTCCGCCAATCCTTA
CGCGACCGATCATTTATTATGCCAATGCGGTAGTTCGCTTCGACATGGCGCGCTATGGCCCGATCTATCAGCCGGTTGGG
CCAAACCTGACCGGGATGGATATTGCGATTGCCGATGCCACGGAAGCGTTACGCCTCTCGACATTAGCGCGGGCCGATGT
GCGCTTCGGCCTACCCAATTTTCGCGTTGAATATCTCTTACAGCAACCGGGTGAAGTTCTGGTGCGCGGGGTTGCCGATA
ACGCCACCGAGGCGAAGCTCCTGGCCGATGCCGGTGCTGCTGAACTGGTACGCCAGATCCGAGCTGCCGGTGGGCGCGAA
ATTTTACGCAACATGCTCGGCTGGCAGCTCTGGCAGGCACTCAACGGCACGACGCCGCCCGCTGATGACCGTTTTGCGCT
GCTGCTGCGCGATATTCTGCGTCTTGAGGCATTGCCCCTCTCGCGACCAATAGAACCGTTTAGCACACCACGCACCCTGA
GCGATCTCTCCGGTGAAGAGATTAGTGATGTTGCGCGGGCGCTTGAGTCACGTTACGACTTGTGGCGATTTGCGATCAAT
ACTCGCAACGCGACCCTCGATGCACTCTGTGGCAGCGCTGGTCTAACCGATACTGCCACTCGTGAAGCAACCTTGCGCGA
CTGTGCCGCAACGAATCCGTCCGCTGCCGCTGAGCTGGCGGCGCGTGATCGCACTATCGCCCAATTACGCAGCATTGAAG
CAGCACTTACCTATATGATTCGGGAAGCGGGTGCCCGCTTCAACGCCGACCAGGAGAGCGCAGCATTCCGCATTCCAGCA
GCACTGCCTGCTGCGCCAGAACCACGTTATGAAATACCGCTGACTGCGCTGGCAATCCTGTTTGGCACGGCCCTTGGCCT
GGGGGGGATTGCGCTCGACCGCAGTGCCGGCGTACTCCCGAAATTGCAGGAATTGTGGCAATACCGCGAGCTGATCCGTA
ACCTGATCCTGCGCGATCTACGTGCCCGCTACAAAGGTAGTGCTCTCGGCTACCTCTGGACACAGATCGCACCACTGGGG
ATGATGCTGGTCTACGTCATCGTCTTCAGCTTTCTCCTGCCCAACGGACTAGCGATGTTTCCGGTCTTCGTGATTGTCGG
ATTGCTGCCCTGGAACTACACCGCAGAAGCGGTATTGAGCGGTACCCGCAGTATCATCGACAATGCTGCGCTGGTGAAAA
AGGTCTACTTCCCGCGAGAGGTATTGCCCCTGGTAGCGGTTGGATCGAGTCTGCTCAATTTCATCCTCTCGCTACCGATG
ATGGCACTGGTGATCATTGTTGTACAACTCGCTACCCTGGGCCGCCTCAACCTGAGCTGGAGCATCGTCTACCTGCCGGT
TATTATGGCACTTCAGACCATCTTTCTGGCCGGCCTGGCGCTCCTTCTCGGTGCGGGTGCCGTCTTCTTCCGCGATGTTG
TGCACCTGATCGGTATCGTAATCAACATCTGGTTCTTCCTCACCCCGATCATCTATCCACTAAGCACAATCAGTGAAGGG
CTGGCTGCCCGTCTAATCCGCTGGTTTAACCCACTCGCCTCGATCATCGAGTTCTACCGCGAGATCATTTACGGCAACCC
TGTGCCGGTTGGTCTGATCCCAACACCGGGTGTACCCGCGCTTAGTGCGATGCTCCGGGTCGGTCTGACCGGACTGATCA
TCCTCGCGTTTGGCTACTGGGTGTTCCAGCGCACCAGCCGCCATTTTGGTGAAGAACTATGA

Upstream 100 bases:

>100_bases
ATGTCGCGATCAACAACGACATCGTGCCACGGGAACAGTGGCAGCATAGTGGATGGCTCCGGATCGATCTGGCTGCCGGT
CAGACAGTAGAGGTGACATT

Downstream 100 bases:

>100_bases
GTGTCGTGATTGAGTTTGACAAGGTTTCACGGCAGTTTGTCCGTCGCCAGAACGCCTCGACTATTCAAGAGCGTTTTATG
GGCCTGATCCGGGGGCTACC

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 632

Protein sequence:

>633_residues
MANTIKQPLNRATGWRAIGDLLTRQRGALRLYQWLWLVLCIVGALSIALPPILTRPIIYYANAVVRFDMARYGPIYQPVG
PNLTGMDIAIADATEALRLSTLARADVRFGLPNFRVEYLLQQPGEVLVRGVADNATEAKLLADAGAAELVRQIRAAGGRE
ILRNMLGWQLWQALNGTTPPADDRFALLLRDILRLEALPLSRPIEPFSTPRTLSDLSGEEISDVARALESRYDLWRFAIN
TRNATLDALCGSAGLTDTATREATLRDCAATNPSAAAELAARDRTIAQLRSIEAALTYMIREAGARFNADQESAAFRIPA
ALPAAPEPRYEIPLTALAILFGTALGLGGIALDRSAGVLPKLQELWQYRELIRNLILRDLRARYKGSALGYLWTQIAPLG
MMLVYVIVFSFLLPNGLAMFPVFVIVGLLPWNYTAEAVLSGTRSIIDNAALVKKVYFPREVLPLVAVGSSLLNFILSLPM
MALVIIVVQLATLGRLNLSWSIVYLPVIMALQTIFLAGLALLLGAGAVFFRDVVHLIGIVINIWFFLTPIIYPLSTISEG
LAARLIRWFNPLASIIEFYREIIYGNPVPVGLIPTPGVPALSAMLRVGLTGLIILAFGYWVFQRTSRHFGEEL

Sequences:

>Translated_633_residues
MANTIKQPLNRATGWRAIGDLLTRQRGALRLYQWLWLVLCIVGALSIALPPILTRPIIYYANAVVRFDMARYGPIYQPVG
PNLTGMDIAIADATEALRLSTLARADVRFGLPNFRVEYLLQQPGEVLVRGVADNATEAKLLADAGAAELVRQIRAAGGRE
ILRNMLGWQLWQALNGTTPPADDRFALLLRDILRLEALPLSRPIEPFSTPRTLSDLSGEEISDVARALESRYDLWRFAIN
TRNATLDALCGSAGLTDTATREATLRDCAATNPSAAAELAARDRTIAQLRSIEAALTYMIREAGARFNADQESAAFRIPA
ALPAAPEPRYEIPLTALAILFGTALGLGGIALDRSAGVLPKLQELWQYRELIRNLILRDLRARYKGSALGYLWTQIAPLG
MMLVYVIVFSFLLPNGLAMFPVFVIVGLLPWNYTAEAVLSGTRSIIDNAALVKKVYFPREVLPLVAVGSSLLNFILSLPM
MALVIIVVQLATLGRLNLSWSIVYLPVIMALQTIFLAGLALLLGAGAVFFRDVVHLIGIVINIWFFLTPIIYPLSTISEG
LAARLIRWFNPLASIIEFYREIIYGNPVPVGLIPTPGVPALSAMLRVGLTGLIILAFGYWVFQRTSRHFGEEL
>Mature_632_residues
ANTIKQPLNRATGWRAIGDLLTRQRGALRLYQWLWLVLCIVGALSIALPPILTRPIIYYANAVVRFDMARYGPIYQPVGP
NLTGMDIAIADATEALRLSTLARADVRFGLPNFRVEYLLQQPGEVLVRGVADNATEAKLLADAGAAELVRQIRAAGGREI
LRNMLGWQLWQALNGTTPPADDRFALLLRDILRLEALPLSRPIEPFSTPRTLSDLSGEEISDVARALESRYDLWRFAINT
RNATLDALCGSAGLTDTATREATLRDCAATNPSAAAELAARDRTIAQLRSIEAALTYMIREAGARFNADQESAAFRIPAA
LPAAPEPRYEIPLTALAILFGTALGLGGIALDRSAGVLPKLQELWQYRELIRNLILRDLRARYKGSALGYLWTQIAPLGM
MLVYVIVFSFLLPNGLAMFPVFVIVGLLPWNYTAEAVLSGTRSIIDNAALVKKVYFPREVLPLVAVGSSLLNFILSLPMM
ALVIIVVQLATLGRLNLSWSIVYLPVIMALQTIFLAGLALLLGAGAVFFRDVVHLIGIVINIWFFLTPIIYPLSTISEGL
AARLIRWFNPLASIIEFYREIIYGNPVPVGLIPTPGVPALSAMLRVGLTGLIILAFGYWVFQRTSRHFGEEL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 69538; Mature: 69407

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS51012 ABC_TM2 ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTIKQPLNRATGWRAIGDLLTRQRGALRLYQWLWLVLCIVGALSIALPPILTRPIIYY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ANAVVRFDMARYGPIYQPVGPNLTGMDIAIADATEALRLSTLARADVRFGLPNFRVEYLL
HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
QQPGEVLVRGVADNATEAKLLADAGAAELVRQIRAAGGREILRNMLGWQLWQALNGTTPP
HCCHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
ADDRFALLLRDILRLEALPLSRPIEPFSTPRTLSDLSGEEISDVARALESRYDLWRFAIN
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHC
TRNATLDALCGSAGLTDTATREATLRDCAATNPSAAAELAARDRTIAQLRSIEAALTYMI
CCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAGARFNADQESAAFRIPAALPAAPEPRYEIPLTALAILFGTALGLGGIALDRSAGVLP
HHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCH
KLQELWQYRELIRNLILRDLRARYKGSALGYLWTQIAPLGMMLVYVIVFSFLLPNGLAMF
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
PVFVIVGLLPWNYTAEAVLSGTRSIIDNAALVKKVYFPREVLPLVAVGSSLLNFILSLPM
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
MALVIIVVQLATLGRLNLSWSIVYLPVIMALQTIFLAGLALLLGAGAVFFRDVVHLIGIV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
INIWFFLTPIIYPLSTISEGLAARLIRWFNPLASIIEFYREIIYGNPVPVGLIPTPGVPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
LSAMLRVGLTGLIILAFGYWVFQRTSRHFGEEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ANTIKQPLNRATGWRAIGDLLTRQRGALRLYQWLWLVLCIVGALSIALPPILTRPIIYY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ANAVVRFDMARYGPIYQPVGPNLTGMDIAIADATEALRLSTLARADVRFGLPNFRVEYLL
HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
QQPGEVLVRGVADNATEAKLLADAGAAELVRQIRAAGGREILRNMLGWQLWQALNGTTPP
HCCHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
ADDRFALLLRDILRLEALPLSRPIEPFSTPRTLSDLSGEEISDVARALESRYDLWRFAIN
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHC
TRNATLDALCGSAGLTDTATREATLRDCAATNPSAAAELAARDRTIAQLRSIEAALTYMI
CCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAGARFNADQESAAFRIPAALPAAPEPRYEIPLTALAILFGTALGLGGIALDRSAGVLP
HHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCH
KLQELWQYRELIRNLILRDLRARYKGSALGYLWTQIAPLGMMLVYVIVFSFLLPNGLAMF
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
PVFVIVGLLPWNYTAEAVLSGTRSIIDNAALVKKVYFPREVLPLVAVGSSLLNFILSLPM
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
MALVIIVVQLATLGRLNLSWSIVYLPVIMALQTIFLAGLALLLGAGAVFFRDVVHLIGIV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
INIWFFLTPIIYPLSTISEGLAARLIRWFNPLASIIEFYREIIYGNPVPVGLIPTPGVPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
LSAMLRVGLTGLIILAFGYWVFQRTSRHFGEEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]