Click here to switch to the map view.

The map label for this gene is ydhO [H]

Identifier: 222524986

GI number: 222524986

Start: 2172400

End: 2174010

Strand: Direct

Name: ydhO [H]

Synonym: Chy400_1721

Alternate gene names: 222524986

Gene position: 2172400-2174010 (Clockwise)

Preceding gene: 222524985

Following gene: 222524989

Centisome position: 41.23

GC content: 55.0

Gene sequence:

>1611_bases
ATGATTGAGCTACATCACGATCGCTCTGGTGATCTACTTCCGCTTGAATTGCAACGTTTGCGTGAACGAGCAGTTCATCA
TCGAAGTAGATACTTACGACAATCGCGACCGTTTGCTACAATCGCTTCATTTGCCCGCTCTGCGCCAGAACTACAACGCA
GGCTTCGCCAACTTCCCTCTCGGTATCTTCTCCACTCTGTGGTAACTCTCCTCTTACCGGTCGCCCTTCTGTTAGGGCAA
TTGCCACTTCGACCGGTGAAGCCAGTCGTCACCACCCCCACAACGACACCAGGCGAGATTGAGGGTGCAGTGCCGATGTA
TATACCCGGCCCACTGAATCTTGATTCGACTCAGACTGGCGAGATTGTGGGCGATCCGCCGCTCGATACCGACGAGGCAT
TACCGGTGCCATTGACCATTCTCTCGCGCAGCGAGATGACAGCACCGCTGATCGTGCCGGCAACCGTGATTGCCGATACT
GCCAAAGTCCGCAATGGTCCCGGTCTCGCGTATGATGATATTGCACGTCTCTCTAACGGGGCAACAATTGAGGTCGTTGG
ACGCTATGGCGAATGGCTGCGGTTCCGTACTGCCGATGACCCTTCGCTCCGCTGGATTGCTGCCGAGCTGGTTGATTTAC
CTGAAGCAGTCTTCTACAACTTGAAGCCGGTGGCTGAAGCTGAGATTCCCCCGCCGCCACCACCACGGGTCGCAACGGTA
CGCGAAGATGGTCTCAATCTCCGTGATGGCCCCGGCACGAATTATGTCAGCATGAAGCGCCTCACCGCCGGGCAAGAGTT
GAACCTTGTTGAGCAATTCAATGGCTGGTTCCTGGTTGAGACTGGTGGCTTATTCGGATGGGTGACTTCTGAATTTCTTA
CTATTGCCCCTGGCGTCGTAGAACGAGTTCCAGTGGCAGCAAGTATTCCTGATCCTAATCCACCACTTGTTGGTTCGGTT
CTTGAGAACTCGGTTAACCTGCGAAAGGGTCCTGGTTCAGCCTACGAGCGGATCGGTGCAGTCAATGCCGGGACGGAAGT
GAAACTGCTTGCCCGTCACAAGGACTGGTACCGGGTTGAGCTGGCCAATGGCACCAAAGCCTGGGTTTATGCTGAGCTAT
TAGGTGTGACGCCGATGGCTGCCCGTCGGGTTCCGTACACCAATGACATCCCAGCTCTCCCCAACCGTAATCGTCTGGCC
AATAGTGGGCCTGTGAATGTTCCTGCCAGTGGTGATGTAGCTAGCTATGCGGTACAGTTCGTTGGGTATCGCTACGTCTG
GGGTGGTGCCAGCCCGCGTACCGGTTTTGATTGCAGTGGTCTAACATCGTATGTTTACCGTCAGTTTGGGGTCAACTTGC
CGCGTAGTGCTGCATCTCAGTTCAACACCCGTTACGGGGCAATGATTGGCAGTATGAGCAATCTTGCACCCGGTGATCTG
ATGTTCTTTGCTAACACCGGCGGTCGGCGCGGTATTACCCACGTTGCCATCTACATTGGCAATGGTCAGATGGTACACGC
TATGACGCCGGCTTACGGGGTGCAGATTTCGAGTATCTGGAGTTCTTACTGGACGAGCCGCTTCGCCGGTGCAATCCGTC
CGTACCGCTGA

Upstream 100 bases:

>100_bases
TCGCTTCCTACCCTGCCGACCTCCGGCGCCACCAGGTGTGTGGTATTGGTATGAACCTTTATGCCGGTGGTTAGGCAGCG
AGAAAGAGGAAAGACGCTCC

Downstream 100 bases:

>100_bases
TAAGACAGCGTTCTCGCTGGAGGGGCAGGCTGCCAGCCTGCCCCTCCAGATTCATGTACCGGTAAACGTATGCGCTGCCC
ACGCTCGCCAGTACGTGCAG

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MIELHHDRSGDLLPLELQRLRERAVHHRSRYLRQSRPFATIASFARSAPELQRRLRQLPSRYLLHSVVTLLLPVALLLGQ
LPLRPVKPVVTTPTTTPGEIEGAVPMYIPGPLNLDSTQTGEIVGDPPLDTDEALPVPLTILSRSEMTAPLIVPATVIADT
AKVRNGPGLAYDDIARLSNGATIEVVGRYGEWLRFRTADDPSLRWIAAELVDLPEAVFYNLKPVAEAEIPPPPPPRVATV
REDGLNLRDGPGTNYVSMKRLTAGQELNLVEQFNGWFLVETGGLFGWVTSEFLTIAPGVVERVPVAASIPDPNPPLVGSV
LENSVNLRKGPGSAYERIGAVNAGTEVKLLARHKDWYRVELANGTKAWVYAELLGVTPMAARRVPYTNDIPALPNRNRLA
NSGPVNVPASGDVASYAVQFVGYRYVWGGASPRTGFDCSGLTSYVYRQFGVNLPRSAASQFNTRYGAMIGSMSNLAPGDL
MFFANTGGRRGITHVAIYIGNGQMVHAMTPAYGVQISSIWSSYWTSRFAGAIRPYR

Sequences:

>Translated_536_residues
MIELHHDRSGDLLPLELQRLRERAVHHRSRYLRQSRPFATIASFARSAPELQRRLRQLPSRYLLHSVVTLLLPVALLLGQ
LPLRPVKPVVTTPTTTPGEIEGAVPMYIPGPLNLDSTQTGEIVGDPPLDTDEALPVPLTILSRSEMTAPLIVPATVIADT
AKVRNGPGLAYDDIARLSNGATIEVVGRYGEWLRFRTADDPSLRWIAAELVDLPEAVFYNLKPVAEAEIPPPPPPRVATV
REDGLNLRDGPGTNYVSMKRLTAGQELNLVEQFNGWFLVETGGLFGWVTSEFLTIAPGVVERVPVAASIPDPNPPLVGSV
LENSVNLRKGPGSAYERIGAVNAGTEVKLLARHKDWYRVELANGTKAWVYAELLGVTPMAARRVPYTNDIPALPNRNRLA
NSGPVNVPASGDVASYAVQFVGYRYVWGGASPRTGFDCSGLTSYVYRQFGVNLPRSAASQFNTRYGAMIGSMSNLAPGDL
MFFANTGGRRGITHVAIYIGNGQMVHAMTPAYGVQISSIWSSYWTSRFAGAIRPYR
>Mature_536_residues
MIELHHDRSGDLLPLELQRLRERAVHHRSRYLRQSRPFATIASFARSAPELQRRLRQLPSRYLLHSVVTLLLPVALLLGQ
LPLRPVKPVVTTPTTTPGEIEGAVPMYIPGPLNLDSTQTGEIVGDPPLDTDEALPVPLTILSRSEMTAPLIVPATVIADT
AKVRNGPGLAYDDIARLSNGATIEVVGRYGEWLRFRTADDPSLRWIAAELVDLPEAVFYNLKPVAEAEIPPPPPPRVATV
REDGLNLRDGPGTNYVSMKRLTAGQELNLVEQFNGWFLVETGGLFGWVTSEFLTIAPGVVERVPVAASIPDPNPPLVGSV
LENSVNLRKGPGSAYERIGAVNAGTEVKLLARHKDWYRVELANGTKAWVYAELLGVTPMAARRVPYTNDIPALPNRNRLA
NSGPVNVPASGDVASYAVQFVGYRYVWGGASPRTGFDCSGLTSYVYRQFGVNLPRSAASQFNTRYGAMIGSMSNLAPGDL
MFFANTGGRRGITHVAIYIGNGQMVHAMTPAYGVQISSIWSSYWTSRFAGAIRPYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=161, Percent_Identity=36.0248447204969, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1788501, Length=130, Percent_Identity=43.0769230769231, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786421, Length=116, Percent_Identity=35.3448275862069, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788001, Length=146, Percent_Identity=36.3013698630137, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 58507; Mature: 58507

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELHHDRSGDLLPLELQRLRERAVHHRSRYLRQSRPFATIASFARSAPELQRRLRQLPS
CEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHH
RYLLHSVVTLLLPVALLLGQLPLRPVKPVVTTPTTTPGEIEGAVPMYIPGPLNLDSTQTG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC
EIVGDPPLDTDEALPVPLTILSRSEMTAPLIVPATVIADTAKVRNGPGLAYDDIARLSNG
CEECCCCCCCCCCCCCCEEEECCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHCCC
ATIEVVGRYGEWLRFRTADDPSLRWIAAELVDLPEAVFYNLKPVAEAEIPPPPPPRVATV
CEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCEEEE
REDGLNLRDGPGTNYVSMKRLTAGQELNLVEQFNGWFLVETGGLFGWVTSEFLTIAPGVV
CCCCCCCCCCCCCCEEEEHHHCCCCCCCHHHHCCCEEEEECCCEEHHHHHHHHHHCCCHH
ERVPVAASIPDPNPPLVGSVLENSVNLRKGPGSAYERIGAVNAGTEVKLLARHKDWYRVE
HHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCEEEEE
LANGTKAWVYAELLGVTPMAARRVPYTNDIPALPNRNRLANSGPVNVPASGDVASYAVQF
ECCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
VGYRYVWGGASPRTGFDCSGLTSYVYRQFGVNLPRSAASQFNTRYGAMIGSMSNLAPGDL
HCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
MFFANTGGRRGITHVAIYIGNGQMVHAMTPAYGVQISSIWSSYWTSRFAGAIRPYR
EEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIELHHDRSGDLLPLELQRLRERAVHHRSRYLRQSRPFATIASFARSAPELQRRLRQLPS
CEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHH
RYLLHSVVTLLLPVALLLGQLPLRPVKPVVTTPTTTPGEIEGAVPMYIPGPLNLDSTQTG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC
EIVGDPPLDTDEALPVPLTILSRSEMTAPLIVPATVIADTAKVRNGPGLAYDDIARLSNG
CEECCCCCCCCCCCCCCEEEECCCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHCCC
ATIEVVGRYGEWLRFRTADDPSLRWIAAELVDLPEAVFYNLKPVAEAEIPPPPPPRVATV
CEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCEEEE
REDGLNLRDGPGTNYVSMKRLTAGQELNLVEQFNGWFLVETGGLFGWVTSEFLTIAPGVV
CCCCCCCCCCCCCCEEEEHHHCCCCCCCHHHHCCCEEEEECCCEEHHHHHHHHHHCCCHH
ERVPVAASIPDPNPPLVGSVLENSVNLRKGPGSAYERIGAVNAGTEVKLLARHKDWYRVE
HHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCEEEEE
LANGTKAWVYAELLGVTPMAARRVPYTNDIPALPNRNRLANSGPVNVPASGDVASYAVQF
ECCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
VGYRYVWGGASPRTGFDCSGLTSYVYRQFGVNLPRSAASQFNTRYGAMIGSMSNLAPGDL
HCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
MFFANTGGRRGITHVAIYIGNGQMVHAMTPAYGVQISSIWSSYWTSRFAGAIRPYR
EEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]