| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is pcrA [H]
Identifier: 222524068
GI number: 222524068
Start: 990609
End: 993245
Strand: Direct
Name: pcrA [H]
Synonym: Chy400_0784
Alternate gene names: 222524068
Gene position: 990609-993245 (Clockwise)
Preceding gene: 222524067
Following gene: 222524069
Centisome position: 18.8
GC content: 55.14
Gene sequence:
>2637_bases GTGAGCACCTTTCACCAACATCTCACTGCTATTACCAGGCGACAACTTCCTCCCATCGAACGCCTGTGGGAGATGAGCGG TTTCACACCTAATGATGCCCAGCGTGAGGCTATCTTGCACGTAGATGGCCCTCTCTACCTGACTGCTGGTCCTGGTTCCG GCAAAACGCGTGTCCTTCTCTGGCGAACGCTCAACTTGATGGTTTACTATGGAGTGAAAGCCGAGGAGATTTTTCTTGCT ACGTTCACCGAGAAGGCAGCCAGACAGTTAAGCGATGGTTTACGCTCCTATCTCGGTCTGGTCACCAACCTGACCGGCCA GCCTTATGACCTGGCTGGAATGTACATTGGCACAGTACATTCGCTCTGCCAGCGTATACTTACCGACCGACGACGTTTTT TTCTCGACCGCCAGCGGCCTCGTTCGCCTGCGCTTCTGGATGACCTGGGGCAGTATTTCCACCTTTACGAACGAGCCAAC TGGGAGATCGTCACCCGCGCTGCTGGCCTTGATCCCAGTTCGGCTGCTGAAGTCGTTACCGGACACTTGAACACGCAACC TTCAGCTTCTCGTCATCGTGCAATCGAAGCACTACGCCCCTTCTTCAACCGCTTCTCGGAAGAATTGCTTGACCCCGCCG AGTTGCGCCCGCGCCTTTCCAGCCTGGTACGTGGCGAGTTTTCACCGCAAGATGTAGATTTGCTGCTGGCGCTCTACGAG GGTTATCTTCAAAGCCTGCGAGAGGCGGGAAGAACCGACTTTGCCCTGCTTCAGCGCGAGGCGTTCCAGGTTTTACAGGA GTTCCAGGGGGCCGGTGGTGTCTTTCGCCACGTGATTGTGGATGAATATCAGGATACCAACACTATCCAGGAACGCATCT TCTTTCGCTTGGCAGAAGGAACAGGTAACCTATGCGTAGTAGGAGACGACGACCAGGCACTTTACCGCTTTCGCGGCGCA ACTGTGGAAAACTTTGTCCAGTTTCCAGCCCGCTGCCAGAAGTATCTGAACCAGACACCTCGTACCATTTCCCTGGAGAT CAACTACCGCTCACGTTCCCACATTGTTGAAACCTATGGACGCTTTATTAATCACACCAATTGGCAAGACAGAGATGGAA TGGTCTACCGCATCCCTAAAAATATTCGTGCCTATCGTAACGACCTGGCGCCAGCCGTAGTAGCCAGCACTCCCGCTGAG CCGGAGCAGGCTTGCCAGGAGATTGCCCGTTTTGTCCGTCGCCTTATCGAGACAGGGAAAGTTCAAAACCCGAATCAGAT CGCCTTTCTCTACCCCTCGCTCAAATCCGAACAGGCGAAGCGTATGATCGCTGCATTGAAAGCGGAAGGGCTGGACGTGT ATGCTCCACGCGCTGGGCGTTTTCTGGAAGTGGACGAAGCCAGAGATGTACTGGGCATCTTCCTTGCCATCTTCGGACGC CCTACAATCGAAGGGAGGGGACATGATCTGCGAACTTTTGAGGTTTACTTAACGGCCCTTCAAACCCGCGCTGATGAATT ACAGCAGACCGACCCGTTACTCAAGCAGTTCATTCAGAACCGCCGCGACGAGATTCAGCGCGCCCTCAGCGATTATGCCG CCCTGCAAGCCGTGCTGACCCGCAACCGCTGGCTTCCCGATCAGCTCTACGATCCGGCAAGCATGAAACGCGCCCTGGCT GACGCACCAGGACTTTCAGAGACCGGACACCGCCTGGTGTCTAGCGCATACCTCGACCGCCTCGTGCTCCTGCGCGCCAG CGAGGGACGACCACTTTCGCTGGAATATGTTATTCGCCGTGCAACCTCACTCGACTGGAACCTGCTCGACCTGTTCTACC AGTTGATGGGCTTTGAGCACTTCAAAGCCATGTTCGACCGTGCCGAACGACAAGGCGACGAAGGCGCAGTAGCCAATCTG GGACTGCTAACGCAATACCTGGCACGCTTCGTGCAGGAACGTGTCAACATTCTGACCGCTGCCATTCTCAGTGAACACAA ATTTTCGGGAATGTTCTTCGGTTCCTTCATCTTCGCTCTCTACCGCCTGGAAGAGGGCGAGCGCGAAGACGAGGAGAATC CCTTCCCACGCGGACGCATTCCCTTTCTGACCATCCACCAGGCCAAAGGATTGGAGTTCCCGGTCGTAGTGCTGGGCAAT CTCGATAAACGCGACCACGGTGCTCCTCTCATCGAACGTCTGGTACGCCCCTTATTGTCACGCCCGGCCGGCGAACCACT TGATCGAATGACCGCCTTTGATATTGCCCGCATGTTCTACGTTGCCCTGTCGCGGGCGCAGAATTTGCTCATCCTGGCTC ATTTTTCCGGACGCGGGCAGCGCCAGGACGAAGCGTTCAAACCTATCTTGAACGGTAATCTACCTCGCCTGGCTGATTTC GACCTGAACAGTTTGCCCAACGCTGTCGCAACCGATGAGACGTTGCCCAAAGTGTACTCTTTCACCGCCGATTACCTGCT CTATCAGACATGCCCGCGGCAGTACATGATTTTCCGTAAGTTCGGTTTCGTTCCTTCTCGTTCGCAAACGATGTTCTTCG GCTCGCTGGTGCATCGCACGATAGAGGATTTGCACCACGAGATCATTCGCCGCCGCAAACTAACAGATGGCAGATAG
Upstream 100 bases:
>100_bases GTGATGCCGTAATTCCCATCGCCCTGGCTCATCGCTACACGGCCATCAGCACGCAACCCGGCGGGCGTGTGCTTGACTTG TTAACCCGGAGAGCACTATC
Downstream 100 bases:
>100_bases CAAATGAGCGCTGTTGAAGAAGGAAAGCTATGACCGAAGACCCTTTTAACGATATTGAAGATTTTATTCGGCAGCGTTTT GAGGAGAACTTCAAGCAACT
Product: UvrD/REP helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 878; Mature: 877
Protein sequence:
>878_residues MSTFHQHLTAITRRQLPPIERLWEMSGFTPNDAQREAILHVDGPLYLTAGPGSGKTRVLLWRTLNLMVYYGVKAEEIFLA TFTEKAARQLSDGLRSYLGLVTNLTGQPYDLAGMYIGTVHSLCQRILTDRRRFFLDRQRPRSPALLDDLGQYFHLYERAN WEIVTRAAGLDPSSAAEVVTGHLNTQPSASRHRAIEALRPFFNRFSEELLDPAELRPRLSSLVRGEFSPQDVDLLLALYE GYLQSLREAGRTDFALLQREAFQVLQEFQGAGGVFRHVIVDEYQDTNTIQERIFFRLAEGTGNLCVVGDDDQALYRFRGA TVENFVQFPARCQKYLNQTPRTISLEINYRSRSHIVETYGRFINHTNWQDRDGMVYRIPKNIRAYRNDLAPAVVASTPAE PEQACQEIARFVRRLIETGKVQNPNQIAFLYPSLKSEQAKRMIAALKAEGLDVYAPRAGRFLEVDEARDVLGIFLAIFGR PTIEGRGHDLRTFEVYLTALQTRADELQQTDPLLKQFIQNRRDEIQRALSDYAALQAVLTRNRWLPDQLYDPASMKRALA DAPGLSETGHRLVSSAYLDRLVLLRASEGRPLSLEYVIRRATSLDWNLLDLFYQLMGFEHFKAMFDRAERQGDEGAVANL GLLTQYLARFVQERVNILTAAILSEHKFSGMFFGSFIFALYRLEEGEREDEENPFPRGRIPFLTIHQAKGLEFPVVVLGN LDKRDHGAPLIERLVRPLLSRPAGEPLDRMTAFDIARMFYVALSRAQNLLILAHFSGRGQRQDEAFKPILNGNLPRLADF DLNSLPNAVATDETLPKVYSFTADYLLYQTCPRQYMIFRKFGFVPSRSQTMFFGSLVHRTIEDLHHEIIRRRKLTDGR
Sequences:
>Translated_878_residues MSTFHQHLTAITRRQLPPIERLWEMSGFTPNDAQREAILHVDGPLYLTAGPGSGKTRVLLWRTLNLMVYYGVKAEEIFLA TFTEKAARQLSDGLRSYLGLVTNLTGQPYDLAGMYIGTVHSLCQRILTDRRRFFLDRQRPRSPALLDDLGQYFHLYERAN WEIVTRAAGLDPSSAAEVVTGHLNTQPSASRHRAIEALRPFFNRFSEELLDPAELRPRLSSLVRGEFSPQDVDLLLALYE GYLQSLREAGRTDFALLQREAFQVLQEFQGAGGVFRHVIVDEYQDTNTIQERIFFRLAEGTGNLCVVGDDDQALYRFRGA TVENFVQFPARCQKYLNQTPRTISLEINYRSRSHIVETYGRFINHTNWQDRDGMVYRIPKNIRAYRNDLAPAVVASTPAE PEQACQEIARFVRRLIETGKVQNPNQIAFLYPSLKSEQAKRMIAALKAEGLDVYAPRAGRFLEVDEARDVLGIFLAIFGR PTIEGRGHDLRTFEVYLTALQTRADELQQTDPLLKQFIQNRRDEIQRALSDYAALQAVLTRNRWLPDQLYDPASMKRALA DAPGLSETGHRLVSSAYLDRLVLLRASEGRPLSLEYVIRRATSLDWNLLDLFYQLMGFEHFKAMFDRAERQGDEGAVANL GLLTQYLARFVQERVNILTAAILSEHKFSGMFFGSFIFALYRLEEGEREDEENPFPRGRIPFLTIHQAKGLEFPVVVLGN LDKRDHGAPLIERLVRPLLSRPAGEPLDRMTAFDIARMFYVALSRAQNLLILAHFSGRGQRQDEAFKPILNGNLPRLADF DLNSLPNAVATDETLPKVYSFTADYLLYQTCPRQYMIFRKFGFVPSRSQTMFFGSLVHRTIEDLHHEIIRRRKLTDGR >Mature_877_residues STFHQHLTAITRRQLPPIERLWEMSGFTPNDAQREAILHVDGPLYLTAGPGSGKTRVLLWRTLNLMVYYGVKAEEIFLAT FTEKAARQLSDGLRSYLGLVTNLTGQPYDLAGMYIGTVHSLCQRILTDRRRFFLDRQRPRSPALLDDLGQYFHLYERANW EIVTRAAGLDPSSAAEVVTGHLNTQPSASRHRAIEALRPFFNRFSEELLDPAELRPRLSSLVRGEFSPQDVDLLLALYEG YLQSLREAGRTDFALLQREAFQVLQEFQGAGGVFRHVIVDEYQDTNTIQERIFFRLAEGTGNLCVVGDDDQALYRFRGAT VENFVQFPARCQKYLNQTPRTISLEINYRSRSHIVETYGRFINHTNWQDRDGMVYRIPKNIRAYRNDLAPAVVASTPAEP EQACQEIARFVRRLIETGKVQNPNQIAFLYPSLKSEQAKRMIAALKAEGLDVYAPRAGRFLEVDEARDVLGIFLAIFGRP TIEGRGHDLRTFEVYLTALQTRADELQQTDPLLKQFIQNRRDEIQRALSDYAALQAVLTRNRWLPDQLYDPASMKRALAD APGLSETGHRLVSSAYLDRLVLLRASEGRPLSLEYVIRRATSLDWNLLDLFYQLMGFEHFKAMFDRAERQGDEGAVANLG LLTQYLARFVQERVNILTAAILSEHKFSGMFFGSFIFALYRLEEGEREDEENPFPRGRIPFLTIHQAKGLEFPVVVLGNL DKRDHGAPLIERLVRPLLSRPAGEPLDRMTAFDIARMFYVALSRAQNLLILAHFSGRGQRQDEAFKPILNGNLPRLADFD LNSLPNAVATDETLPKVYSFTADYLLYQTCPRQYMIFRKFGFVPSRSQTMFFGSLVHRTIEDLHHEIIRRRKLTDGR
Specific function: DNA helicase used for plasmid rolling-circle replication and also involved in UV repair [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=462, Percent_Identity=29.6536796536797, Blast_Score=125, Evalue=8e-30, Organism=Saccharomyces cerevisiae, GI6322369, Length=730, Percent_Identity=24.3835616438356, Blast_Score=117, Evalue=7e-27,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 100484; Mature: 100353
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFHQHLTAITRRQLPPIERLWEMSGFTPNDAQREAILHVDGPLYLTAGPGSGKTRVLL CCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEECCCCCCCEEEH WRTLNLMVYYGVKAEEIFLATFTEKAARQLSDGLRSYLGLVTNLTGQPYDLAGMYIGTVH EEEECCCEEECCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH SLCQRILTDRRRFFLDRQRPRSPALLDDLGQYFHLYERANWEIVTRAAGLDPSSAAEVVT HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHC GHLNTQPSASRHRAIEALRPFFNRFSEELLDPAELRPRLSSLVRGEFSPQDVDLLLALYE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH GYLQSLREAGRTDFALLQREAFQVLQEFQGAGGVFRHVIVDEYQDTNTIQERIFFRLAEG HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC TGNLCVVGDDDQALYRFRGATVENFVQFPARCQKYLNQTPRTISLEINYRSRSHIVETYG CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHH RFINHTNWQDRDGMVYRIPKNIRAYRNDLAPAVVASTPAEPEQACQEIARFVRRLIETGK HHHCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCC VQNPNQIAFLYPSLKSEQAKRMIAALKAEGLDVYAPRAGRFLEVDEARDVLGIFLAIFGR CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEHHHHHHHHHHHHHHHCC PTIEGRGHDLRTFEVYLTALQTRADELQQTDPLLKQFIQNRRDEIQRALSDYAALQAVLT CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RNRWLPDQLYDPASMKRALADAPGLSETGHRLVSSAYLDRLVLLRASEGRPLSLEYVIRR HCCCCCHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHH ATSLDWNLLDLFYQLMGFEHFKAMFDRAERQGDEGAVANLGLLTQYLARFVQERVNILTA HCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AILSEHKFSGMFFGSFIFALYRLEEGEREDEENPFPRGRIPFLTIHQAKGLEFPVVVLGN HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECC LDKRDHGAPLIERLVRPLLSRPAGEPLDRMTAFDIARMFYVALSRAQNLLILAHFSGRGQ CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC RQDEAFKPILNGNLPRLADFDLNSLPNAVATDETLPKVYSFTADYLLYQTCPRQYMIFRK CCHHHHHHHHCCCCCCEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH FGFVPSRSQTMFFGSLVHRTIEDLHHEIIRRRKLTDGR HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure STFHQHLTAITRRQLPPIERLWEMSGFTPNDAQREAILHVDGPLYLTAGPGSGKTRVLL CHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEECCCCCCCEEEH WRTLNLMVYYGVKAEEIFLATFTEKAARQLSDGLRSYLGLVTNLTGQPYDLAGMYIGTVH EEEECCCEEECCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH SLCQRILTDRRRFFLDRQRPRSPALLDDLGQYFHLYERANWEIVTRAAGLDPSSAAEVVT HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHC GHLNTQPSASRHRAIEALRPFFNRFSEELLDPAELRPRLSSLVRGEFSPQDVDLLLALYE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH GYLQSLREAGRTDFALLQREAFQVLQEFQGAGGVFRHVIVDEYQDTNTIQERIFFRLAEG HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC TGNLCVVGDDDQALYRFRGATVENFVQFPARCQKYLNQTPRTISLEINYRSRSHIVETYG CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHH RFINHTNWQDRDGMVYRIPKNIRAYRNDLAPAVVASTPAEPEQACQEIARFVRRLIETGK HHHCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCC VQNPNQIAFLYPSLKSEQAKRMIAALKAEGLDVYAPRAGRFLEVDEARDVLGIFLAIFGR CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEHHHHHHHHHHHHHHHCC PTIEGRGHDLRTFEVYLTALQTRADELQQTDPLLKQFIQNRRDEIQRALSDYAALQAVLT CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RNRWLPDQLYDPASMKRALADAPGLSETGHRLVSSAYLDRLVLLRASEGRPLSLEYVIRR HCCCCCHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHH ATSLDWNLLDLFYQLMGFEHFKAMFDRAERQGDEGAVANLGLLTQYLARFVQERVNILTA HCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AILSEHKFSGMFFGSFIFALYRLEEGEREDEENPFPRGRIPFLTIHQAKGLEFPVVVLGN HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECC LDKRDHGAPLIERLVRPLLSRPAGEPLDRMTAFDIARMFYVALSRAQNLLILAHFSGRGQ CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC RQDEAFKPILNGNLPRLADFDLNSLPNAVATDETLPKVYSFTADYLLYQTCPRQYMIFRK CCHHHHHHHHCCCCCCEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH FGFVPSRSQTMFFGSLVHRTIEDLHHEIIRRRKLTDGR HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9701819; 9384377 [H]