Click here to switch to the map view.

The map label for this gene is treC [C]

Identifier: 222523845

GI number: 222523845

Start: 660343

End: 662094

Strand: Direct

Name: treC [C]

Synonym: Chy400_0553

Alternate gene names: 222523845

Gene position: 660343-662094 (Clockwise)

Preceding gene: 222523844

Following gene: 222523846

Centisome position: 12.53

GC content: 55.82

Gene sequence:

>1752_bases
ATGCATCGAATAATTGTTACCCTGCTTACCATCAGTGTACTCGTTGCCTGTGGTGCGCCAGCAGCCGGGCCAACCGCACC
GGCTGCATCGCCCACCGTAGCCGGCACCCCGACCAATTCGCGTCCGCCAACGCCAACCCGTGATCCGCGCCTGCCAACCT
TGCCGCCGCGTATAACGCCCGGCCCTACGGCCACACCTTTTCCGCTTGAAGCCGGCTGGTGGGATGGGGCTGTCTGTTAT
GAAATTTTCGTGCGCTCGTTTTACGATAGCGACGGCGACGGCAACGGTGATCTGAACGGCATTATCGCCAAACTTGACTA
TCTCAATGATGGCGATCCCAACACGACCACCGATCTGGGCATCAATTGTATCTGGCTGATGCCGGTCGCCGAAGCTGCCA
GTTATCACGGCTACGACACGATTGACTATTACACGGTCGAACGCGACTACGGCACCAATGAGGATTTCAAGCGTCTGGTT
GCCGAAGCGGAACGGCGCGGGATTAAAATCATCATCGATTTAGTACTGAACCATACCAGTACCCAACACCCGTGGTTTCA
AGAGGCATTACGCGACCCCAACTCACCGTACCGCGACTGGTATTTGTGGTCGGCGATTGACCCTGGCTATCGTGGCCCAT
TCGGCAACAATGTGGTCTGGCACAAATCACCCATTCGTGATGAATATTATTACGGCGTGTTCTGGGGTGGTATGCCCGAT
CTCAACTATCGCAATCCGGCAGTCACTGCCGAAGCCTACAAGATTGCTCGCTTTTGGGTTGAAGAGATGGGGGTTGCCGG
CTTCCGTCTCGACGCGATCAAGCATCTGATCGAATATTACACTCTCCAGGAAGACACCGTCGAGACCTTTGAATGGTTGC
GCGAGTTTCGACGTTTTCTCGACCGGGAACTACCCGGAACCTTCACGATTGGCGAAGTCTTCAACGGCAACCCGCGCACG
CTGGCACCGTACTATCCTGACCAGCTCGATTACTATTTCGAGTTTGAAGTCGCCAATCAGATTCGCGGCGCGGCCAACAC
CGGTCTATCGCGATTGTTTATGCAGGCGGTGCAGGATGCCTACACAAAACTACCCTATCAACGCTGGGCACCCTTCCTGA
CCAATCACGACCAGAACCGCGTGATGTCGGTGTTGGGTGATGACGTGGCGAAGGCAAAACTGGCTGCGCTGGCTCTGCTG
ACCATGCCGGGACTGCCCTTCATCTATTATGGTGAAGAGATCGGCATGCTGGGGGTGAAACCGGATGAGCGTATTCGCAC
CCCAATGCAGTGGACGAAGGAGGAGTTTGGCGGATTCTCAGCCGGTATTCCCTGGCAGCAGCCGCAGAGCGATTACCCGG
TCAAGAATGTGATGTTACAAGACCAGGATCCCGAATCGCTGCTCAACACCTACCGGCAGTTAATTCATCTCCACGTGAAT
ACACCGGCACTGGCGACCGGTGATTTCTGGCCGTTAACTGCTAACGGTGCCAGTGTCGCCGCGTACATCAGGCGCAGTGG
TGAAGACATGGTTTTGGTGGTGATTAATTTTGACAAAGTACCCACGCCACCGTTTACACTATCATCAGGTGAGAGCGACC
TGCCGGCAGGCACCTACCAGGTGACCGCACTCTTCGGCACGCCACCGGCACCGCCGGTGCCGCTTACCATCGCCGACGGG
CGTATCGTGGAGTATCAACCGGGGATCGAAATACCGGCTCAAACCGGATACATATTCAGGTTGGAGCGCTAA

Upstream 100 bases:

>100_bases
CAGGGTTGCGTCGTCTGTTCATGCAGAGTGACGAGTCAACACCTGCGCAAAATCCGGTATAATGCAACAAACGCATTAAT
TGACAAAGAAACGGTTTCCT

Downstream 100 bases:

>100_bases
TGTTACGAAAAGTAACTGCAACTCGTTATGTCACACCGTTGCGTGAAGGCGGTTCATTACCGGCGATTGTCGAAGCCGAT
GATGATGGCCTGTACGTCGT

Product: alpha amylase catalytic subunit

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MHRIIVTLLTISVLVACGAPAAGPTAPAASPTVAGTPTNSRPPTPTRDPRLPTLPPRITPGPTATPFPLEAGWWDGAVCY
EIFVRSFYDSDGDGNGDLNGIIAKLDYLNDGDPNTTTDLGINCIWLMPVAEAASYHGYDTIDYYTVERDYGTNEDFKRLV
AEAERRGIKIIIDLVLNHTSTQHPWFQEALRDPNSPYRDWYLWSAIDPGYRGPFGNNVVWHKSPIRDEYYYGVFWGGMPD
LNYRNPAVTAEAYKIARFWVEEMGVAGFRLDAIKHLIEYYTLQEDTVETFEWLREFRRFLDRELPGTFTIGEVFNGNPRT
LAPYYPDQLDYYFEFEVANQIRGAANTGLSRLFMQAVQDAYTKLPYQRWAPFLTNHDQNRVMSVLGDDVAKAKLAALALL
TMPGLPFIYYGEEIGMLGVKPDERIRTPMQWTKEEFGGFSAGIPWQQPQSDYPVKNVMLQDQDPESLLNTYRQLIHLHVN
TPALATGDFWPLTANGASVAAYIRRSGEDMVLVVINFDKVPTPPFTLSSGESDLPAGTYQVTALFGTPPAPPVPLTIADG
RIVEYQPGIEIPAQTGYIFRLER

Sequences:

>Translated_583_residues
MHRIIVTLLTISVLVACGAPAAGPTAPAASPTVAGTPTNSRPPTPTRDPRLPTLPPRITPGPTATPFPLEAGWWDGAVCY
EIFVRSFYDSDGDGNGDLNGIIAKLDYLNDGDPNTTTDLGINCIWLMPVAEAASYHGYDTIDYYTVERDYGTNEDFKRLV
AEAERRGIKIIIDLVLNHTSTQHPWFQEALRDPNSPYRDWYLWSAIDPGYRGPFGNNVVWHKSPIRDEYYYGVFWGGMPD
LNYRNPAVTAEAYKIARFWVEEMGVAGFRLDAIKHLIEYYTLQEDTVETFEWLREFRRFLDRELPGTFTIGEVFNGNPRT
LAPYYPDQLDYYFEFEVANQIRGAANTGLSRLFMQAVQDAYTKLPYQRWAPFLTNHDQNRVMSVLGDDVAKAKLAALALL
TMPGLPFIYYGEEIGMLGVKPDERIRTPMQWTKEEFGGFSAGIPWQQPQSDYPVKNVMLQDQDPESLLNTYRQLIHLHVN
TPALATGDFWPLTANGASVAAYIRRSGEDMVLVVINFDKVPTPPFTLSSGESDLPAGTYQVTALFGTPPAPPVPLTIADG
RIVEYQPGIEIPAQTGYIFRLER
>Mature_583_residues
MHRIIVTLLTISVLVACGAPAAGPTAPAASPTVAGTPTNSRPPTPTRDPRLPTLPPRITPGPTATPFPLEAGWWDGAVCY
EIFVRSFYDSDGDGNGDLNGIIAKLDYLNDGDPNTTTDLGINCIWLMPVAEAASYHGYDTIDYYTVERDYGTNEDFKRLV
AEAERRGIKIIIDLVLNHTSTQHPWFQEALRDPNSPYRDWYLWSAIDPGYRGPFGNNVVWHKSPIRDEYYYGVFWGGMPD
LNYRNPAVTAEAYKIARFWVEEMGVAGFRLDAIKHLIEYYTLQEDTVETFEWLREFRRFLDRELPGTFTIGEVFNGNPRT
LAPYYPDQLDYYFEFEVANQIRGAANTGLSRLFMQAVQDAYTKLPYQRWAPFLTNHDQNRVMSVLGDDVAKAKLAALALL
TMPGLPFIYYGEEIGMLGVKPDERIRTPMQWTKEEFGGFSAGIPWQQPQSDYPVKNVMLQDQDPESLLNTYRQLIHLHVN
TPALATGDFWPLTANGASVAAYIRRSGEDMVLVVINFDKVPTPPFTLSSGESDLPAGTYQVTALFGTPPAPPVPLTIADG
RIVEYQPGIEIPAQTGYIFRLER

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=527, Percent_Identity=31.4990512333966, Blast_Score=202, Evalue=8e-52,
Organism=Escherichia coli, GI1790687, Length=527, Percent_Identity=32.258064516129, Blast_Score=224, Evalue=2e-59,
Organism=Escherichia coli, GI1786604, Length=514, Percent_Identity=26.6536964980545, Blast_Score=131, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI32565753, Length=539, Percent_Identity=23.747680890538, Blast_Score=121, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI25147709, Length=450, Percent_Identity=25.7777777777778, Blast_Score=97, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322245, Length=395, Percent_Identity=29.3670886075949, Blast_Score=154, Evalue=3e-38,
Organism=Saccharomyces cerevisiae, GI6321726, Length=559, Percent_Identity=24.6869409660107, Blast_Score=150, Evalue=4e-37,
Organism=Saccharomyces cerevisiae, GI6321731, Length=540, Percent_Identity=25.5555555555556, Blast_Score=149, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6319776, Length=540, Percent_Identity=25.3703703703704, Blast_Score=147, Evalue=5e-36,
Organism=Saccharomyces cerevisiae, GI6322241, Length=557, Percent_Identity=25.1346499102334, Blast_Score=144, Evalue=6e-35,
Organism=Saccharomyces cerevisiae, GI6322021, Length=557, Percent_Identity=25.1346499102334, Blast_Score=144, Evalue=6e-35,
Organism=Saccharomyces cerevisiae, GI6324416, Length=555, Percent_Identity=25.2252252252252, Blast_Score=143, Evalue=7e-35,
Organism=Drosophila melanogaster, GI45549022, Length=524, Percent_Identity=30.3435114503817, Blast_Score=207, Evalue=2e-53,
Organism=Drosophila melanogaster, GI221330053, Length=571, Percent_Identity=29.2469352014011, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24583747, Length=476, Percent_Identity=32.3529411764706, Blast_Score=194, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24583749, Length=476, Percent_Identity=32.3529411764706, Blast_Score=193, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24583745, Length=513, Percent_Identity=30.7992202729045, Blast_Score=192, Evalue=5e-49,
Organism=Drosophila melanogaster, GI24586599, Length=533, Percent_Identity=30.5816135084428, Blast_Score=192, Evalue=7e-49,
Organism=Drosophila melanogaster, GI24586589, Length=524, Percent_Identity=31.2977099236641, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24586593, Length=534, Percent_Identity=31.2734082397004, Blast_Score=185, Evalue=8e-47,
Organism=Drosophila melanogaster, GI24586591, Length=537, Percent_Identity=30.3538175046555, Blast_Score=184, Evalue=2e-46,
Organism=Drosophila melanogaster, GI24586597, Length=526, Percent_Identity=30.0380228136882, Blast_Score=181, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24586587, Length=477, Percent_Identity=29.979035639413, Blast_Score=180, Evalue=2e-45,
Organism=Drosophila melanogaster, GI281360393, Length=473, Percent_Identity=30.4439746300211, Blast_Score=139, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 65452; Mature: 65452

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRIIVTLLTISVLVACGAPAAGPTAPAASPTVAGTPTNSRPPTPTRDPRLPTLPPRITP
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GPTATPFPLEAGWWDGAVCYEIFVRSFYDSDGDGNGDLNGIIAKLDYLNDGDPNTTTDLG
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHCC
INCIWLMPVAEAASYHGYDTIDYYTVERDYGTNEDFKRLVAEAERRGIKIIIDLVLNHTS
CEEEEEEEHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEHHCCCC
TQHPWFQEALRDPNSPYRDWYLWSAIDPGYRGPFGNNVVWHKSPIRDEYYYGVFWGGMPD
CCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCC
LNYRNPAVTAEAYKIARFWVEEMGVAGFRLDAIKHLIEYYTLQEDTVETFEWLREFRRFL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DRELPGTFTIGEVFNGNPRTLAPYYPDQLDYYFEFEVANQIRGAANTGLSRLFMQAVQDA
HHCCCCCEEECCEECCCCCEECCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHHH
YTKLPYQRWAPFLTNHDQNRVMSVLGDDVAKAKLAALALLTMPGLPFIYYGEEIGMLGVK
HHHCCHHHCCCHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEECCC
PDERIRTPMQWTKEEFGGFSAGIPWQQPQSDYPVKNVMLQDQDPESLLNTYRQLIHLHVN
CHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHEEEEEC
TPALATGDFWPLTANGASVAAYIRRSGEDMVLVVINFDKVPTPPFTLSSGESDLPAGTYQ
CCCEECCCCCEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCEE
VTALFGTPPAPPVPLTIADGRIVEYQPGIEIPAQTGYIFRLER
EEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MHRIIVTLLTISVLVACGAPAAGPTAPAASPTVAGTPTNSRPPTPTRDPRLPTLPPRITP
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GPTATPFPLEAGWWDGAVCYEIFVRSFYDSDGDGNGDLNGIIAKLDYLNDGDPNTTTDLG
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHCC
INCIWLMPVAEAASYHGYDTIDYYTVERDYGTNEDFKRLVAEAERRGIKIIIDLVLNHTS
CEEEEEEEHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEHHCCCC
TQHPWFQEALRDPNSPYRDWYLWSAIDPGYRGPFGNNVVWHKSPIRDEYYYGVFWGGMPD
CCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCC
LNYRNPAVTAEAYKIARFWVEEMGVAGFRLDAIKHLIEYYTLQEDTVETFEWLREFRRFL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DRELPGTFTIGEVFNGNPRTLAPYYPDQLDYYFEFEVANQIRGAANTGLSRLFMQAVQDA
HHCCCCCEEECCEECCCCCEECCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHHH
YTKLPYQRWAPFLTNHDQNRVMSVLGDDVAKAKLAALALLTMPGLPFIYYGEEIGMLGVK
HHHCCHHHCCCHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEECCC
PDERIRTPMQWTKEEFGGFSAGIPWQQPQSDYPVKNVMLQDQDPESLLNTYRQLIHLHVN
CHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHEEEEEC
TPALATGDFWPLTANGASVAAYIRRSGEDMVLVVINFDKVPTPPFTLSSGESDLPAGTYQ
CCCEECCCCCEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCEE
VTALFGTPPAPPVPLTIADGRIVEYQPGIEIPAQTGYIFRLER
EEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2455281 [H]