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The map label for this gene is yukF [H]

Identifier: 222523826

GI number: 222523826

Start: 636456

End: 638009

Strand: Direct

Name: yukF [H]

Synonym: Chy400_0534

Alternate gene names: 222523826

Gene position: 636456-638009 (Clockwise)

Preceding gene: 222523813

Following gene: 222523828

Centisome position: 12.08

GC content: 56.82

Gene sequence:

>1554_bases
ATGGTAACGATCACCGTGCGCGACGTTGTGCGCCTGGCCCTACCCGAAGGTACAAATATTGTGGCTGGCGCTGCCGGGTT
AGGGCGTCAGGTCAGTTGGATTGCAACGTTACGTGCAACCCTACCGGCCTTTGCCGAACTCCGTGGCGGCGAATTAGCCT
TACTATCAGTTGAAGCTGCCCTGGCCCTTGATCCTCGGCTTACCCTTGCCGTGCTCGTTCGTCGTCTGGCGCAGGCACCG
GTGCCAATTGCAGGTGTGGCGGTCCTGGGCACTATTACGCCCGAAGATCAGCAGGCTGCCGAAGATGCCCGCTTGCCTTT
GCTCCAGCTTCCCGAAGGGGTTGACTTACGTGAAGTAGAGCGTGAAATCACCCGCCTTATTACCGATTATGAAGCCCAAT
TTGAGCGTCGGGCCGCTCGTCTGTACGATCTGCTGACCCAGTGCTCTCTACAAGGTGGCGGAATAAGCGGTCTGCTCGAT
ATTTTGCACGAACGTACCGGTCAGAGCGTGGCTTTCTACGCCTCGAATGGCGTGTTACGTGCCCAACGTGGGCGGGGGCA
ATCGCGGCTGGCATTACAAGCGCTGCGGCCAAATGGACGGGGTGAAACGACGCTGCTTAACCAGCAAATCTGGGTCGAAC
CAATTGGTAATTCAGGTTTGCCAATCGGGTATGTTGCGATTGCCGGTACGCTACTCGATCCGTGGGATCGCACCGCGGCA
CAGCGCGGTGCACTGGCACTGGCGCTTGAGCTGGCGAAAGAGCAGGCGGTACAGGCTGCCGAGGAACGTCTACGCGGTGA
TTTTATTGCCGGGATTCTGGCCGGCGCACCCGGTGATCTGGCCGCAGTGATCCAGCGTGGTCAGGAATTGGGATATACCC
TTCATCTGCCCCATACGGCGATGCTGGTACATATTGATGATGCCAGCACCGCAACACTGGCTCGCGCAGCAACGAACATT
CAGAATGAACTGAAACGTCTAGGCGTGAACGCACCAATCTCTCGTCGTGAGAGTAATGTGCTTTGTATGCTGCCTACGAC
CAGCGTTACGCGCCTGCGAGAGCTAACAGAGCAATTGCGCGAACGGTTACGGCTCGATCATCCAAATGTCGTGATCGCAA
TCGGCACCCCTGCAACTCATTTGACCGAGTGGCGCCGTTCAGTCGAAGAAGCAGAGCAATCGCTTAGCCTTGGCCGGCAG
ATTTTTGGCAACGACCGGGTGCTGGCGTTCGGCGATCTCGGTGTGTATCGCCTGTTGATCCGTCTCCGTGAAACGCCTGA
GTTGTGGTCATTCTACCGGGAGACGCTCTCGAGTCTGGCCGAGTACGACAAACGCCAACACGCCGATCTGATTAAGACAC
TCGAAGCCTATTTCAATCATCTTGGCAATCTACGGGCAACTTCAGAAGCATTGCACGTCCACCGGAATACGCTGCTCTAC
CGCCTCGAACGCATTAAAGAGATTAGTGGCATGGACCTCGACAACGCCGAGGAACATTTTGCCCTCTGGCTGGCTGTACG
TGCACATCGCATCCTGGCAACGCTTGAGGAGTGA

Upstream 100 bases:

>100_bases
ATCAGATGAGACGATGCTTGTCAAGTGGGTGCAGCACTTTTTGCAAGAACACTGTATAATACGAGAAGATTTCGGTGATA
AACGATTGTGATGCATCACT

Downstream 100 bases:

>100_bases
TAGCAAATCTGGCAGAGAGGTCAGGGCACGGGTTCCAAATACCCTGGTGGTGCATCTGAGTACGGATGCGTTGCATCATC
GTTTCCGCTGCACCGTTTGG

Product: transcriptional regulator CdaR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MVTITVRDVVRLALPEGTNIVAGAAGLGRQVSWIATLRATLPAFAELRGGELALLSVEAALALDPRLTLAVLVRRLAQAP
VPIAGVAVLGTITPEDQQAAEDARLPLLQLPEGVDLREVEREITRLITDYEAQFERRAARLYDLLTQCSLQGGGISGLLD
ILHERTGQSVAFYASNGVLRAQRGRGQSRLALQALRPNGRGETTLLNQQIWVEPIGNSGLPIGYVAIAGTLLDPWDRTAA
QRGALALALELAKEQAVQAAEERLRGDFIAGILAGAPGDLAAVIQRGQELGYTLHLPHTAMLVHIDDASTATLARAATNI
QNELKRLGVNAPISRRESNVLCMLPTTSVTRLRELTEQLRERLRLDHPNVVIAIGTPATHLTEWRRSVEEAEQSLSLGRQ
IFGNDRVLAFGDLGVYRLLIRLRETPELWSFYRETLSSLAEYDKRQHADLIKTLEAYFNHLGNLRATSEALHVHRNTLLY
RLERIKEISGMDLDNAEEHFALWLAVRAHRILATLEE

Sequences:

>Translated_517_residues
MVTITVRDVVRLALPEGTNIVAGAAGLGRQVSWIATLRATLPAFAELRGGELALLSVEAALALDPRLTLAVLVRRLAQAP
VPIAGVAVLGTITPEDQQAAEDARLPLLQLPEGVDLREVEREITRLITDYEAQFERRAARLYDLLTQCSLQGGGISGLLD
ILHERTGQSVAFYASNGVLRAQRGRGQSRLALQALRPNGRGETTLLNQQIWVEPIGNSGLPIGYVAIAGTLLDPWDRTAA
QRGALALALELAKEQAVQAAEERLRGDFIAGILAGAPGDLAAVIQRGQELGYTLHLPHTAMLVHIDDASTATLARAATNI
QNELKRLGVNAPISRRESNVLCMLPTTSVTRLRELTEQLRERLRLDHPNVVIAIGTPATHLTEWRRSVEEAEQSLSLGRQ
IFGNDRVLAFGDLGVYRLLIRLRETPELWSFYRETLSSLAEYDKRQHADLIKTLEAYFNHLGNLRATSEALHVHRNTLLY
RLERIKEISGMDLDNAEEHFALWLAVRAHRILATLEE
>Mature_517_residues
MVTITVRDVVRLALPEGTNIVAGAAGLGRQVSWIATLRATLPAFAELRGGELALLSVEAALALDPRLTLAVLVRRLAQAP
VPIAGVAVLGTITPEDQQAAEDARLPLLQLPEGVDLREVEREITRLITDYEAQFERRAARLYDLLTQCSLQGGGISGLLD
ILHERTGQSVAFYASNGVLRAQRGRGQSRLALQALRPNGRGETTLLNQQIWVEPIGNSGLPIGYVAIAGTLLDPWDRTAA
QRGALALALELAKEQAVQAAEERLRGDFIAGILAGAPGDLAAVIQRGQELGYTLHLPHTAMLVHIDDASTATLARAATNI
QNELKRLGVNAPISRRESNVLCMLPTTSVTRLRELTEQLRERLRLDHPNVVIAIGTPATHLTEWRRSVEEAEQSLSLGRQ
IFGNDRVLAFGDLGVYRLLIRLRETPELWSFYRETLSSLAEYDKRQHADLIKTLEAYFNHLGNLRATSEALHVHRNTLLY
RLERIKEISGMDLDNAEEHFALWLAVRAHRILATLEE

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=277, Percent_Identity=27.0758122743682, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010312 [H]

Pfam domain/function: PF06018 CodY [H]

EC number: NA

Molecular weight: Translated: 56906; Mature: 56906

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTITVRDVVRLALPEGTNIVAGAAGLGRQVSWIATLRATLPAFAELRGGELALLSVEAA
CEEEEHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHH
LALDPRLTLAVLVRRLAQAPVPIAGVAVLGTITPEDQQAAEDARLPLLQLPEGVDLREVE
HHCCCCHHHHHHHHHHHHCCCCEECCEEEECCCCCHHHHHHHHCCCHHCCCCCCCHHHHH
REITRLITDYEAQFERRAARLYDLLTQCSLQGGGISGLLDILHERTGQSVAFYASNGVLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCEEE
AQRGRGQSRLALQALRPNGRGETTLLNQQIWVEPIGNSGLPIGYVAIAGTLLDPWDRTAA
ECCCCCCHHHHHHEECCCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHH
QRGALALALELAKEQAVQAAEERLRGDFIAGILAGAPGDLAAVIQRGQELGYTLHLPHTA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCEE
MLVHIDDASTATLARAATNIQNELKRLGVNAPISRRESNVLCMLPTTSVTRLRELTEQLR
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
ERLRLDHPNVVIAIGTPATHLTEWRRSVEEAEQSLSLGRQIFGNDRVLAFGDLGVYRLLI
HHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH
RLRETPELWSFYRETLSSLAEYDKRQHADLIKTLEAYFNHLGNLRATSEALHVHRNTLLY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RLERIKEISGMDLDNAEEHFALWLAVRAHRILATLEE
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVTITVRDVVRLALPEGTNIVAGAAGLGRQVSWIATLRATLPAFAELRGGELALLSVEAA
CEEEEHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHH
LALDPRLTLAVLVRRLAQAPVPIAGVAVLGTITPEDQQAAEDARLPLLQLPEGVDLREVE
HHCCCCHHHHHHHHHHHHCCCCEECCEEEECCCCCHHHHHHHHCCCHHCCCCCCCHHHHH
REITRLITDYEAQFERRAARLYDLLTQCSLQGGGISGLLDILHERTGQSVAFYASNGVLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCEEE
AQRGRGQSRLALQALRPNGRGETTLLNQQIWVEPIGNSGLPIGYVAIAGTLLDPWDRTAA
ECCCCCCHHHHHHEECCCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHH
QRGALALALELAKEQAVQAAEERLRGDFIAGILAGAPGDLAAVIQRGQELGYTLHLPHTA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCEE
MLVHIDDASTATLARAATNIQNELKRLGVNAPISRRESNVLCMLPTTSVTRLRELTEQLR
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
ERLRLDHPNVVIAIGTPATHLTEWRRSVEEAEQSLSLGRQIFGNDRVLAFGDLGVYRLLI
HHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH
RLRETPELWSFYRETLSSLAEYDKRQHADLIKTLEAYFNHLGNLRATSEALHVHRNTLLY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RLERIKEISGMDLDNAEEHFALWLAVRAHRILATLEE
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9168598; 9384377 [H]