| Definition | Macrococcus caseolyticus JCSC5402, complete genome. |
|---|---|
| Accession | NC_011999 |
| Length | 2,102,324 |
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The map label for this gene is 222151919
Identifier: 222151919
GI number: 222151919
Start: 1814195
End: 1815046
Strand: Direct
Name: 222151919
Synonym: MCCL_1676
Alternate gene names: NA
Gene position: 1814195-1815046 (Clockwise)
Preceding gene: 222151917
Following gene: 222151924
Centisome position: 86.29
GC content: 28.29
Gene sequence:
>852_bases ATGAAAATAGGAAAAAGAATTAAAAATCGCCGTCAACAACTTAATATGACTCAAGGTGAGCTGTCAGATGGGATATGCAC TCAAAGTCAAATTAGCAAGATAGAGAAAGACGAGATAATACCTTTAGCAAGTCTTCTAGTGAAGATTGCTGAGAAATTGG AAGTTTCCTTAGATGATTTAGTCTATGAAAATAGAATAAAAAGAATAGAAAATGAATTTTTAATAGATAAGGAACGCATA GACTATTTATTGAAAATTAGAGAATATGGTAAAATACAAAATCTTATTAGCGTGATAGATAAAGAAAAATTAAGCTTTAA TGACTCAATTTATATTATGTATGTATCATTAGTAACAGATAATTATACACGAAATAATAATTCATTCGAAAAATTAGAGA TTTTTTACTCTGAACACAGTGATACTATGGAGGATAATCTTAAGATAAGAACTCTGAATAGCTTGGGGATTCTGTCAATG GAAAATAATCAGTCAGAGAAAGCTAAAGAGTATTTCTTGAAAGGTTATAGAATTGCGATAACAAGTAATGCATATGAGGA TCTGTTATTCAAGGTTGCATATAATTACCTAAGGCTTCTCTTTCAGCTTGAAGAATACAAAGAGATGTATGATATTTCAT GCACAGCTATAGAATTTGTCTTCGTGAATAATAATACCTATTGTTATCCTCAACTAGTTTTCTATAAATATTTTGCTTTA ATGAAACTTAATTTATTATCACTCGTAGATATGAAAGAGATAGAGACAGCCTTATTTTTCAGCATAAAAAAAGGCGAAAA CAAAACTACAGAAAACCTTGAAAAAATTATATATAATTTGAAAAGATTATAA
Upstream 100 bases:
>100_bases CTCCTTTCTAATATTTTAAAGTAAAAATCTAAGTAATATTGTATATATTCATATAATATATAATATAATGTATATCTATA TAATAAGAAAGGGTTAATTT
Downstream 100 bases:
>100_bases TTTATGAATCATCTACAAAAGGATGTTAATCTCTATGTCTCAAGAAAACAAATTGGATATATTTCACAAGACGACTTGAT AATGATGGAAAGCATTAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator PlcR
Number of amino acids: Translated: 283; Mature: 283
Protein sequence:
>283_residues MKIGKRIKNRRQQLNMTQGELSDGICTQSQISKIEKDEIIPLASLLVKIAEKLEVSLDDLVYENRIKRIENEFLIDKERI DYLLKIREYGKIQNLISVIDKEKLSFNDSIYIMYVSLVTDNYTRNNNSFEKLEIFYSEHSDTMEDNLKIRTLNSLGILSM ENNQSEKAKEYFLKGYRIAITSNAYEDLLFKVAYNYLRLLFQLEEYKEMYDISCTAIEFVFVNNNTYCYPQLVFYKYFAL MKLNLLSLVDMKEIETALFFSIKKGENKTTENLEKIIYNLKRL
Sequences:
>Translated_283_residues MKIGKRIKNRRQQLNMTQGELSDGICTQSQISKIEKDEIIPLASLLVKIAEKLEVSLDDLVYENRIKRIENEFLIDKERI DYLLKIREYGKIQNLISVIDKEKLSFNDSIYIMYVSLVTDNYTRNNNSFEKLEIFYSEHSDTMEDNLKIRTLNSLGILSM ENNQSEKAKEYFLKGYRIAITSNAYEDLLFKVAYNYLRLLFQLEEYKEMYDISCTAIEFVFVNNNTYCYPQLVFYKYFAL MKLNLLSLVDMKEIETALFFSIKKGENKTTENLEKIIYNLKRL >Mature_283_residues MKIGKRIKNRRQQLNMTQGELSDGICTQSQISKIEKDEIIPLASLLVKIAEKLEVSLDDLVYENRIKRIENEFLIDKERI DYLLKIREYGKIQNLISVIDKEKLSFNDSIYIMYVSLVTDNYTRNNNSFEKLEIFYSEHSDTMEDNLKIRTLNSLGILSM ENNQSEKAKEYFLKGYRIAITSNAYEDLLFKVAYNYLRLLFQLEEYKEMYDISCTAIEFVFVNNNTYCYPQLVFYKYFAL MKLNLLSLVDMKEIETALFFSIKKGENKTTENLEKIIYNLKRL
Specific function: Unknown
COG id: COG1396
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33542; Mature: 33542
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIGKRIKNRRQQLNMTQGELSDGICTQSQISKIEKDEIIPLASLLVKIAEKLEVSLDDL CCHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHCHHHHH VYENRIKRIENEFLIDKERIDYLLKIREYGKIQNLISVIDKEKLSFNDSIYIMYVSLVTD HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEC NYTRNNNSFEKLEIFYSEHSDTMEDNLKIRTLNSLGILSMENNQSEKAKEYFLKGYRIAI CCCCCCCCHHHEEEEECCCCCCHHCCEEEEEECCCEEEEECCCCHHHHHHHHHCCEEEEE TSNAYEDLLFKVAYNYLRLLFQLEEYKEMYDISCTAIEFVFVNNNTYCYPQLVFYKYFAL ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCEEEHHHHHHHHHHHH MKLNLLSLVDMKEIETALFFSIKKGENKTTENLEKIIYNLKRL HHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MKIGKRIKNRRQQLNMTQGELSDGICTQSQISKIEKDEIIPLASLLVKIAEKLEVSLDDL CCHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHCHHHHH VYENRIKRIENEFLIDKERIDYLLKIREYGKIQNLISVIDKEKLSFNDSIYIMYVSLVTD HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEC NYTRNNNSFEKLEIFYSEHSDTMEDNLKIRTLNSLGILSMENNQSEKAKEYFLKGYRIAI CCCCCCCCHHHEEEEECCCCCCHHCCEEEEEECCCEEEEECCCCHHHHHHHHHCCEEEEE TSNAYEDLLFKVAYNYLRLLFQLEEYKEMYDISCTAIEFVFVNNNTYCYPQLVFYKYFAL ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCEEEHHHHHHHHHHHH MKLNLLSLVDMKEIETALFFSIKKGENKTTENLEKIIYNLKRL HHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA