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The map label for this gene is ypdF [C]

Identifier: 222151621

GI number: 222151621

Start: 1490645

End: 1491712

Strand: Direct

Name: ypdF [C]

Synonym: MCCL_1374

Alternate gene names: 222151621

Gene position: 1490645-1491712 (Clockwise)

Preceding gene: 222151618

Following gene: 222151622

Centisome position: 70.9

GC content: 39.42

Gene sequence:

>1068_bases
ATGAAAAATTTAGAAAAATTGACAGCTTATATGACTGAACAGAATATTACACATGCTTTTATTACAACGCCAGAAAATAT
CAATTACTTCAGTGGCTTCCTTTCTGACCCCCACGAACGACTTACAGCTTTGTACGTAACACAGCACAAAGCATCATTAA
TCGTGCCCGCAATGGAAGTGAACGATGCGATAAACGCGTCAAATTTAAATACAGTTGGCTATTCAGATACAGAAGATGCA
TTTCAAGTAGCTAAACGTCAGCTTGAAATACCGGATGGAGCTGTAATGTTTATCGAAGAGGAACATGTAACAGTAAAGCG
CGAGAAAGCAATTCAACTGCACTTCAAACCAAGTGCATTACAATCAATCGATCAGATTATTAAAGATATGCGAAATATTA
AATCAGAAGATGAGGTTGCTTTATTAAAACAAGCGGCACGCTACGCAGACCAAGCGGTTGAAACTGGAGTAGCAGCATTA
AAAATCGGGATTACTGAAGCGGAAGTTGTGCAGATTATCGAAAGTGAAATGAAACGTATTGAAGGTATTTCTGATATGAG
TTTCAGTACGATGGTACTGTTTGGTGATCACGCAGCAAGTCCACATGGCACACCTGGTGGAAGAACGTTGAATGAGGACG
AATATGTACTCTTTGATCTTGGTGTTATATACAAAGGTTATTGTTCCGATATTACACGTACAGTAGCATTCGGTACACCT
CCTCAGTTACATCAAGATATTCACAGTATCGTTACAGAAGCAAATAAACGTGCGATAGCACTTGTAAAGCCCGGCGTATC
TATTAAAGACATAGACGCAGCTGCACGTGATTATATCATCTCTAAAGGTTATGGAGACTATTTCCCACACCGCTTAGGTC
ACGGTCTTGGCATCAGTGTACATGAATTCCCAGATATCTCTTCATCAAATGAAAACACATTACAAGCTGGTATGGTATTT
ACAATCGAACCGGGTATTTACTATCCTGAAACAGTTGGTGTTCGCGTTGAAGATGATATTCTAGTAACAGAAGATGGATA
CGAAGTGCTCACGAGCTATGTAAAATGA

Upstream 100 bases:

>100_bases
TATACATTAATTAAAGTGTATTTAAAAAGCTGACACATGGAAATTGAATTCTCAATTAATCTAATTTACACTAGAAGTAC
TATGAAAAAGGAGCAATGAT

Downstream 100 bases:

>100_bases
CCACATACAATGTCGTCGAAACTTTTCATGATCTATACATAGCAGTGGATCATGGGGCAACACATATTGTTATTAATCAG
ACCGGGATGACAGCAAGTTA

Product: proline dipeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MKNLEKLTAYMTEQNITHAFITTPENINYFSGFLSDPHERLTALYVTQHKASLIVPAMEVNDAINASNLNTVGYSDTEDA
FQVAKRQLEIPDGAVMFIEEEHVTVKREKAIQLHFKPSALQSIDQIIKDMRNIKSEDEVALLKQAARYADQAVETGVAAL
KIGITEAEVVQIIESEMKRIEGISDMSFSTMVLFGDHAASPHGTPGGRTLNEDEYVLFDLGVIYKGYCSDITRTVAFGTP
PQLHQDIHSIVTEANKRAIALVKPGVSIKDIDAAARDYIISKGYGDYFPHRLGHGLGISVHEFPDISSSNENTLQAGMVF
TIEPGIYYPETVGVRVEDDILVTEDGYEVLTSYVK

Sequences:

>Translated_355_residues
MKNLEKLTAYMTEQNITHAFITTPENINYFSGFLSDPHERLTALYVTQHKASLIVPAMEVNDAINASNLNTVGYSDTEDA
FQVAKRQLEIPDGAVMFIEEEHVTVKREKAIQLHFKPSALQSIDQIIKDMRNIKSEDEVALLKQAARYADQAVETGVAAL
KIGITEAEVVQIIESEMKRIEGISDMSFSTMVLFGDHAASPHGTPGGRTLNEDEYVLFDLGVIYKGYCSDITRTVAFGTP
PQLHQDIHSIVTEANKRAIALVKPGVSIKDIDAAARDYIISKGYGDYFPHRLGHGLGISVHEFPDISSSNENTLQAGMVF
TIEPGIYYPETVGVRVEDDILVTEDGYEVLTSYVK
>Mature_355_residues
MKNLEKLTAYMTEQNITHAFITTPENINYFSGFLSDPHERLTALYVTQHKASLIVPAMEVNDAINASNLNTVGYSDTEDA
FQVAKRQLEIPDGAVMFIEEEHVTVKREKAIQLHFKPSALQSIDQIIKDMRNIKSEDEVALLKQAARYADQAVETGVAAL
KIGITEAEVVQIIESEMKRIEGISDMSFSTMVLFGDHAASPHGTPGGRTLNEDEYVLFDLGVIYKGYCSDITRTVAFGTP
PQLHQDIHSIVTEANKRAIALVKPGVSIKDIDAAARDYIISKGYGDYFPHRLGHGLGISVHEFPDISSSNENTLQAGMVF
TIEPGIYYPETVGVRVEDDILVTEDGYEVLTSYVK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI11559925, Length=402, Percent_Identity=28.1094527363184, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI260593665, Length=288, Percent_Identity=26.3888888888889, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI149589008, Length=288, Percent_Identity=26.3888888888889, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI264681563, Length=222, Percent_Identity=32.4324324324324, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI93141226, Length=235, Percent_Identity=31.063829787234, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI40385867, Length=252, Percent_Identity=25, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI264681565, Length=219, Percent_Identity=28.310502283105, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1788728, Length=231, Percent_Identity=40.2597402597403, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1789275, Length=266, Percent_Identity=30.8270676691729, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790282, Length=315, Percent_Identity=24.4444444444444, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786364, Length=247, Percent_Identity=24.2914979757085, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17509539, Length=228, Percent_Identity=30.2631578947368, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17508215, Length=288, Percent_Identity=22.5694444444444, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320922, Length=257, Percent_Identity=29.1828793774319, Blast_Score=89, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6321118, Length=296, Percent_Identity=24.6621621621622, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6323273, Length=255, Percent_Identity=25.0980392156863, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322999, Length=249, Percent_Identity=29.718875502008, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19920384, Length=260, Percent_Identity=30.7692307692308, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI21355531, Length=241, Percent_Identity=24.4813278008299, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21357079, Length=286, Percent_Identity=25.1748251748252, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 39290; Mature: 39290

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS00491 PROLINE_PEPTIDASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLEKLTAYMTEQNITHAFITTPENINYFSGFLSDPHERLTALYVTQHKASLIVPAMEV
CCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCHHHHHEEEEEEECCCEEEEEEHHH
NDAINASNLNTVGYSDTEDAFQVAKRQLEIPDGAVMFIEEEHVTVKREKAIQLHFKPSAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCEEEEEECHHHH
QSIDQIIKDMRNIKSEDEVALLKQAARYADQAVETGVAALKIGITEAEVVQIIESEMKRI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHHHHHHH
EGISDMSFSTMVLFGDHAASPHGTPGGRTLNEDEYVLFDLGVIYKGYCSDITRTVAFGTP
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCC
PQLHQDIHSIVTEANKRAIALVKPGVSIKDIDAAARDYIISKGYGDYFPHRLGHGLGISV
HHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHEEECCCCCCCHHHHCCCCCCCH
HEFPDISSSNENTLQAGMVFTIEPGIYYPETVGVRVEDDILVTEDGYEVLTSYVK
HCCCCCCCCCCCEEEECEEEEECCCCCCCCEECEEEECCEEEECCCHHHHHHHCC
>Mature Secondary Structure
MKNLEKLTAYMTEQNITHAFITTPENINYFSGFLSDPHERLTALYVTQHKASLIVPAMEV
CCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCHHHHHEEEEEEECCCEEEEEEHHH
NDAINASNLNTVGYSDTEDAFQVAKRQLEIPDGAVMFIEEEHVTVKREKAIQLHFKPSAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCEEEEEECHHHH
QSIDQIIKDMRNIKSEDEVALLKQAARYADQAVETGVAALKIGITEAEVVQIIESEMKRI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHHHHHHH
EGISDMSFSTMVLFGDHAASPHGTPGGRTLNEDEYVLFDLGVIYKGYCSDITRTVAFGTP
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCC
PQLHQDIHSIVTEANKRAIALVKPGVSIKDIDAAARDYIISKGYGDYFPHRLGHGLGISV
HHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHEEECCCCCCCHHHHCCCCCCCH
HEFPDISSSNENTLQAGMVFTIEPGIYYPETVGVRVEDDILVTEDGYEVLTSYVK
HCCCCCCCCCCCEEEECEEEEECCCCCCCCEECEEEECCEEEECCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA