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The map label for this gene is ymfC [H]

Identifier: 222151117

GI number: 222151117

Start: 956605

End: 957318

Strand: Direct

Name: ymfC [H]

Synonym: MCCL_0868

Alternate gene names: 222151117

Gene position: 956605-957318 (Clockwise)

Preceding gene: 222151116

Following gene: 222151118

Centisome position: 45.5

GC content: 37.11

Gene sequence:

>714_bases
TTGTCTGTAAATCATGAAGTTGTCTATACGAAGGACTGGATTCTATCAAAGATTTATTCAGGAGATTTCAATAGTCATAA
ACCGTTACCCTCTCAATATGAGATATCAAGACAGTTAAATATATCACGCGATGCTATTGAGCTCGCATTTCATGAACTTA
TAACTGAGCAAATTATAACTGAACACTTTCAGGAAGGTTATTTTGTTAAGGAGAAGCCCCCGTTTAACTATCCGGTTGAT
GAACTAAAGAGTATTACTTCTATGATTGAAGAAGCAGGTTATGTCGCGGGTACTCTCATTATCAGTCAAGATATTGAACA
ACCATCGCTAGATGATAAAAGAGTGCTGCGTATAGATGATGAACGAAAAGTTACGGTTATCGAACGTATTCGCACAGCCG
ATGAAACCCCAGTTGTTTATTGTCTGGATAAAATTGATATGATGAATTTTGAAATGGATAGTGGAATCAAATCACGTTCA
TTATTTGACGCACTTATGGATGCAGGGTTAGCCATCAGCTACGCTGCGACTGAGATAGAATCGATTGGCTATGAGCCTTA
CATATCTAATGCGCTGGATTGTGCGCCTGAAGACAGTTTACTCCTTTTCAAACAGATTCATTATAACGATAATCACGAAC
CTGTACTTTATTCGATGAATTATTTTAAATCGAGTCAAGTGAAGTTTAAAGTAAGACGCACAAAGAAAGGTTAG

Upstream 100 bases:

>100_bases
TAATTGATGAGCTGGAAGCAAATGGAGTAATTGGTCCCGCTACAGGGAGTAAACCAAGAGCAGTTTTAATAGAACAAATT
GAAGAATAGGAGCGTTAACA

Downstream 100 bases:

>100_bases
GTGAATACATGTCACATCACATGAATTATTTAAATACTTCTCAATTTAAGACGATATCGCTCGTAATGAAATTTAAAGCA
CCACTTGATGAATCCACAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSVNHEVVYTKDWILSKIYSGDFNSHKPLPSQYEISRQLNISRDAIELAFHELITEQIITEHFQEGYFVKEKPPFNYPVD
ELKSITSMIEEAGYVAGTLIISQDIEQPSLDDKRVLRIDDERKVTVIERIRTADETPVVYCLDKIDMMNFEMDSGIKSRS
LFDALMDAGLAISYAATEIESIGYEPYISNALDCAPEDSLLLFKQIHYNDNHEPVLYSMNYFKSSQVKFKVRRTKKG

Sequences:

>Translated_237_residues
MSVNHEVVYTKDWILSKIYSGDFNSHKPLPSQYEISRQLNISRDAIELAFHELITEQIITEHFQEGYFVKEKPPFNYPVD
ELKSITSMIEEAGYVAGTLIISQDIEQPSLDDKRVLRIDDERKVTVIERIRTADETPVVYCLDKIDMMNFEMDSGIKSRS
LFDALMDAGLAISYAATEIESIGYEPYISNALDCAPEDSLLLFKQIHYNDNHEPVLYSMNYFKSSQVKFKVRRTKKG
>Mature_236_residues
SVNHEVVYTKDWILSKIYSGDFNSHKPLPSQYEISRQLNISRDAIELAFHELITEQIITEHFQEGYFVKEKPPFNYPVDE
LKSITSMIEEAGYVAGTLIISQDIEQPSLDDKRVLRIDDERKVTVIERIRTADETPVVYCLDKIDMMNFEMDSGIKSRSL
FDALMDAGLAISYAATEIESIGYEPYISNALDCAPEDSLLLFKQIHYNDNHEPVLYSMNYFKSSQVKFKVRRTKKG

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27340; Mature: 27209

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNHEVVYTKDWILSKIYSGDFNSHKPLPSQYEISRQLNISRDAIELAFHELITEQIIT
CCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
EHFQEGYFVKEKPPFNYPVDELKSITSMIEEAGYVAGTLIISQDIEQPSLDDKRVLRIDD
HHHHCCEEEECCCCCCCCHHHHHHHHHHHHHCCHHEEEEEEECCCCCCCCCCCEEEEECC
ERKVTVIERIRTADETPVVYCLDKIDMMNFEMDSGIKSRSLFDALMDAGLAISYAATEIE
CCHHHHHHHHHCCCCCCEEEEECHHHHHCEECCCCCCHHHHHHHHHHCCCEEEHHHHHHH
SIGYEPYISNALDCAPEDSLLLFKQIHYNDNHEPVLYSMNYFKSSQVKFKVRRTKKG
HCCCCCHHCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
SVNHEVVYTKDWILSKIYSGDFNSHKPLPSQYEISRQLNISRDAIELAFHELITEQIIT
CCCCCEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
EHFQEGYFVKEKPPFNYPVDELKSITSMIEEAGYVAGTLIISQDIEQPSLDDKRVLRIDD
HHHHCCEEEECCCCCCCCHHHHHHHHHHHHHCCHHEEEEEEECCCCCCCCCCCEEEEECC
ERKVTVIERIRTADETPVVYCLDKIDMMNFEMDSGIKSRSLFDALMDAGLAISYAATEIE
CCHHHHHHHHHCCCCCCEEEEECHHHHHCEECCCCCCHHHHHHHHHHCCCEEEHHHHHHH
SIGYEPYISNALDCAPEDSLLLFKQIHYNDNHEPVLYSMNYFKSSQVKFKVRRTKKG
HCCCCCHHCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]