| Definition | Macrococcus caseolyticus JCSC5402, complete genome. |
|---|---|
| Accession | NC_011999 |
| Length | 2,102,324 |
Click here to switch to the map view.
The map label for this gene is pbpA [H]
Identifier: 222151003
GI number: 222151003
Start: 810723
End: 812972
Strand: Direct
Name: pbpA [H]
Synonym: MCCL_0753
Alternate gene names: 222151003
Gene position: 810723-812972 (Clockwise)
Preceding gene: 222151002
Following gene: 222151004
Centisome position: 38.56
GC content: 40.09
Gene sequence:
>2250_bases ATGTCACGAAGTAAACTAAAACTTAAGAAAAACAAAATAGGAGCAGTCCTCTTGATCATGTTATTCGGACTGCTCTTTTT TTCATTGATTTTTAAATATGGCATGATCATGCTTACAGGAAAGTCTAGTGGCCAGGATCTTGAAATGCGTGCGAGCGAGA AATATGTTCGGAATATTGTCAATCAGCCTGAACGTGGTAAGATTCTAGATCGCAATGGACAAGTACTTGCAGAGGATATT GAATCTTATAAACTTGTCGCCATCCTCGATAAACGATTTTCGGAAGGGAGTAAAAAACCGAGACATGTCGTTAATAAGAA GAAGACAGCTAAAGCTTTAGCTGACATCATTGATATGGATGAAAAGGATATTTATAAAGTGCTGAGCAATAAAAAAGCAT TTCAGGTCGAATTCGGTAAGGCGGGTAAAGACTTGACGTTTGAGCAGAAACAGAAGATACAGAACCTGAAGATGCCTGGA CTCACATTTTTCTCTGAGAAGAAAAGATTTTATCCAAATGGAAATTTCGCTTCACATTTAATTGGTTTTGCAGAAAAAAA TGGGGATACAAACGTAATGACTGGGATGCTCGGTAGTGAGAAGATATTTGATTCTTATCTATCGGGAAAACCAGGTAAAA CTACGTTTAAACAGGATATATGGAACTATGTACTGCCCAAGTCAGGCAATGTCGTGCCAGCACAGGACGGGGATGATGTT ACGCTGACAATTGATAAGAACATTCAGATCTTTGTGGAAGACTCGCTCGATATGATGGTCAAACGCTATAAACCGAAAGA CATCTTTGCTGTCGTGATGGATGCAAAGACGGGAGAAATATTAGGAAGTAGTCAACGACCAACGTTTAATCCTCAGACAA GAGAAGGCTTCGGAGAAAAATGGGCGAACGATCTGTACCAGAATACATATGAGCCAGGTTCTACTTTTAAGACATTCGGT CTTGCAGCAGCAATTGAAGAAAATCAATATGACCCAAAAGCAAAGTATGAATCAGGTGAGCGAGAAATAGACGGCATAAC GATTTCTGACTGGAATGACGTTGGGTGGGGAACAATCACGATGAGCAAAGGGTTCCAATTGTCGTCAAATGTGCTGATGA TGAAACTGCAAGATAAGGTAGGCATCGACAAGATGAAGACATATTATGAAAAGTTTGGTTTTGGCAGATCGACGCAATCA CTCTTTGATTCAGAAGCTAGCGGACATATTTCGTGGAATGATGAACTGAGTCAAAAAGTAAGCTCATTCGGACAGTCTAC AACCGTAACTCCGGCTCAGATGTTACAGGCTGAGAGTGCAATCGTCAATGAAGGTAAGATGCTGAAGCCCTACTTTGTGA AGTCCATTAAGAGTCAGGATAATAATAATATTTATACAGGTAAGAAAGATATTATTGGACAACCGATTTCAAAATCGACA GCACAAAAAACGATGCAGCAGCTCTACGATGTTGTAAATGGTAAGGAGATGCATGCGATTAACTATGGTCTAAAGGATTA TAAAGTTGCTGGTAAGACTGGTACAGCACAAGTGCCGGATACGGAAAAAGGCGGCTACGTCCAAGGGGCTAATCCATATA TGGTCAGCTTTATGGGGTATGCACCAGCCAAAGACCCTGAAGTTATCATCTACTACGGTATGAGTCTCGCACAGAAGAAT GATGCTGAAGCATATGCACAAGGGGTTTCAAAAGGGTATACACCCCTTATGGAAAACACATTAAAATATTTGAATGTAGG ATCACCTGACAAGGATAATGCAAAGCTTATATTTAATACACCGGATGTCATCGGAAGCAAGGATGATAAGGCATCTACTG AGATTGAAAATGCTTCGCTTAAACCTGTTCGAATTGGAAACGGCCGTACCGTGACGAACCAGTTGCCTGCTAAAGGAACG AAGTTATTAGCTGATGACAAAGTATTTATTCTGACTGAAGGGGCAAAAGTGATGCCGGATATTACTGGATGGAGTAAGCG TGATCTCCTGATGTTCAGCACGTTGACCGGAATAGAGATACAGTTCAAAGGTAACGGTTACGCCATCAATCAGTCTATTG ATGTAAATAATCCAATAAAGCAAGGTGATAAGCTGACAGTTGAACTTGATTCATTGGACCCGCTAAAACAATCTCCAGTC TACAATGATGTTATTAAAGCGCAGCTGCAACAGGAAAAAGAAGTGTTAAAAGAACAGATAAAAGATGAAAAACAAAAAAA TTCGAATTAA
Upstream 100 bases:
>100_bases TCTGAAGTGATGAAACAGTCTTCATACGAACGTGTCTATAGTAAAGCGAAATCATACGGATTAAGCTTGAAAAATGATAA CGTAAAGGTAGTGCAAAAAG
Downstream 100 bases:
>100_bases AAGAAAGGAAATCAGTAATTCTGATATGTGAAAATTATGAATGAAATTTATTTTGGAGTCATTGCATTTATACTTACCGC AATACTTGTCCCTTTGTTTA
Product: penicillin-binding protein 1
Products: NA
Alternate protein names: PBP-2B; Penicillin-binding protein B [H]
Number of amino acids: Translated: 749; Mature: 748
Protein sequence:
>749_residues MSRSKLKLKKNKIGAVLLIMLFGLLFFSLIFKYGMIMLTGKSSGQDLEMRASEKYVRNIVNQPERGKILDRNGQVLAEDI ESYKLVAILDKRFSEGSKKPRHVVNKKKTAKALADIIDMDEKDIYKVLSNKKAFQVEFGKAGKDLTFEQKQKIQNLKMPG LTFFSEKKRFYPNGNFASHLIGFAEKNGDTNVMTGMLGSEKIFDSYLSGKPGKTTFKQDIWNYVLPKSGNVVPAQDGDDV TLTIDKNIQIFVEDSLDMMVKRYKPKDIFAVVMDAKTGEILGSSQRPTFNPQTREGFGEKWANDLYQNTYEPGSTFKTFG LAAAIEENQYDPKAKYESGEREIDGITISDWNDVGWGTITMSKGFQLSSNVLMMKLQDKVGIDKMKTYYEKFGFGRSTQS LFDSEASGHISWNDELSQKVSSFGQSTTVTPAQMLQAESAIVNEGKMLKPYFVKSIKSQDNNNIYTGKKDIIGQPISKST AQKTMQQLYDVVNGKEMHAINYGLKDYKVAGKTGTAQVPDTEKGGYVQGANPYMVSFMGYAPAKDPEVIIYYGMSLAQKN DAEAYAQGVSKGYTPLMENTLKYLNVGSPDKDNAKLIFNTPDVIGSKDDKASTEIENASLKPVRIGNGRTVTNQLPAKGT KLLADDKVFILTEGAKVMPDITGWSKRDLLMFSTLTGIEIQFKGNGYAINQSIDVNNPIKQGDKLTVELDSLDPLKQSPV YNDVIKAQLQQEKEVLKEQIKDEKQKNSN
Sequences:
>Translated_749_residues MSRSKLKLKKNKIGAVLLIMLFGLLFFSLIFKYGMIMLTGKSSGQDLEMRASEKYVRNIVNQPERGKILDRNGQVLAEDI ESYKLVAILDKRFSEGSKKPRHVVNKKKTAKALADIIDMDEKDIYKVLSNKKAFQVEFGKAGKDLTFEQKQKIQNLKMPG LTFFSEKKRFYPNGNFASHLIGFAEKNGDTNVMTGMLGSEKIFDSYLSGKPGKTTFKQDIWNYVLPKSGNVVPAQDGDDV TLTIDKNIQIFVEDSLDMMVKRYKPKDIFAVVMDAKTGEILGSSQRPTFNPQTREGFGEKWANDLYQNTYEPGSTFKTFG LAAAIEENQYDPKAKYESGEREIDGITISDWNDVGWGTITMSKGFQLSSNVLMMKLQDKVGIDKMKTYYEKFGFGRSTQS LFDSEASGHISWNDELSQKVSSFGQSTTVTPAQMLQAESAIVNEGKMLKPYFVKSIKSQDNNNIYTGKKDIIGQPISKST AQKTMQQLYDVVNGKEMHAINYGLKDYKVAGKTGTAQVPDTEKGGYVQGANPYMVSFMGYAPAKDPEVIIYYGMSLAQKN DAEAYAQGVSKGYTPLMENTLKYLNVGSPDKDNAKLIFNTPDVIGSKDDKASTEIENASLKPVRIGNGRTVTNQLPAKGT KLLADDKVFILTEGAKVMPDITGWSKRDLLMFSTLTGIEIQFKGNGYAINQSIDVNNPIKQGDKLTVELDSLDPLKQSPV YNDVIKAQLQQEKEVLKEQIKDEKQKNSN >Mature_748_residues SRSKLKLKKNKIGAVLLIMLFGLLFFSLIFKYGMIMLTGKSSGQDLEMRASEKYVRNIVNQPERGKILDRNGQVLAEDIE SYKLVAILDKRFSEGSKKPRHVVNKKKTAKALADIIDMDEKDIYKVLSNKKAFQVEFGKAGKDLTFEQKQKIQNLKMPGL TFFSEKKRFYPNGNFASHLIGFAEKNGDTNVMTGMLGSEKIFDSYLSGKPGKTTFKQDIWNYVLPKSGNVVPAQDGDDVT LTIDKNIQIFVEDSLDMMVKRYKPKDIFAVVMDAKTGEILGSSQRPTFNPQTREGFGEKWANDLYQNTYEPGSTFKTFGL AAAIEENQYDPKAKYESGEREIDGITISDWNDVGWGTITMSKGFQLSSNVLMMKLQDKVGIDKMKTYYEKFGFGRSTQSL FDSEASGHISWNDELSQKVSSFGQSTTVTPAQMLQAESAIVNEGKMLKPYFVKSIKSQDNNNIYTGKKDIIGQPISKSTA QKTMQQLYDVVNGKEMHAINYGLKDYKVAGKTGTAQVPDTEKGGYVQGANPYMVSFMGYAPAKDPEVIIYYGMSLAQKND AEAYAQGVSKGYTPLMENTLKYLNVGSPDKDNAKLIFNTPDVIGSKDDKASTEIENASLKPVRIGNGRTVTNQLPAKGTK LLADDKVFILTEGAKVMPDITGWSKRDLLMFSTLTGIEIQFKGNGYAINQSIDVNNPIKQGDKLTVELDSLDPLKQSPVY NDVIKAQLQQEKEVLKEQIKDEKQKNSN
Specific function: Penicillin-binding proteins (PBPs) function in the late steps of murein biosynthesis. PBP-2B is required for vegetative cell division and sporulation septation. Beta-lactamase inactivates the PBPs by acylating an essential serine residue in the active sit
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PASTA domains [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=584, Percent_Identity=25.513698630137, Blast_Score=149, Evalue=6e-37, Organism=Escherichia coli, GI1786854, Length=572, Percent_Identity=23.0769230769231, Blast_Score=125, Evalue=9e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 83585; Mature: 83454
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSKLKLKKNKIGAVLLIMLFGLLFFSLIFKYGMIMLTGKSSGQDLEMRASEKYVRNIV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHH NQPERGKILDRNGQVLAEDIESYKLVAILDKRFSEGSKKPRHVVNKKKTAKALADIIDMD CCCCCCCEECCCCCCHHHHHHCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC EKDIYKVLSNKKAFQVEFGKAGKDLTFEQKQKIQNLKMPGLTFFSEKKRFYPNGNFASHL HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHH IGFAEKNGDTNVMTGMLGSEKIFDSYLSGKPGKTTFKQDIWNYVLPKSGNVVPAQDGDDV HHHHHCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCE TLTIDKNIQIFVEDSLDMMVKRYKPKDIFAVVMDAKTGEILGSSQRPTFNPQTREGFGEK EEEECCCEEEEEECCHHHHHHHCCCCCEEEEEEECCCCHHCCCCCCCCCCCCHHHHHHHH WANDLYQNTYEPGSTFKTFGLAAAIEENQYDPKAKYESGEREIDGITISDWNDVGWGTIT HHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCCCEECCEEEECCCCCCCEEEE MSKGFQLSSNVLMMKLQDKVGIDKMKTYYEKFGFGRSTQSLFDSEASGHISWNDELSQKV ECCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEECHHHHHHH SSFGQSTTVTPAQMLQAESAIVNEGKMLKPYFVKSIKSQDNNNIYTGKKDIIGQPISKST HHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEECCCHHHCCCCCCHHH AQKTMQQLYDVVNGKEMHAINYGLKDYKVAGKTGTAQVPDTEKGGYVQGANPYMVSFMGY HHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEEEECC APAKDPEVIIYYGMSLAQKNDAEAYAQGVSKGYTPLMENTLKYLNVGSPDKDNAKLIFNT CCCCCCCEEEEECCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEC PDVIGSKDDKASTEIENASLKPVRIGNGRTVTNQLPAKGTKLLADDKVFILTEGAKVMPD CCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCEEEECCEEEEEECCCEECCC ITGWSKRDLLMFSTLTGIEIQFKGNGYAINQSIDVNNPIKQGDKLTVELDSLDPLKQSPV CCCCCCCCEEEEEEECCEEEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCC YNDVIKAQLQQEKEVLKEQIKDEKQKNSN HHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SRSKLKLKKNKIGAVLLIMLFGLLFFSLIFKYGMIMLTGKSSGQDLEMRASEKYVRNIV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHH NQPERGKILDRNGQVLAEDIESYKLVAILDKRFSEGSKKPRHVVNKKKTAKALADIIDMD CCCCCCCEECCCCCCHHHHHHCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC EKDIYKVLSNKKAFQVEFGKAGKDLTFEQKQKIQNLKMPGLTFFSEKKRFYPNGNFASHL HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHH IGFAEKNGDTNVMTGMLGSEKIFDSYLSGKPGKTTFKQDIWNYVLPKSGNVVPAQDGDDV HHHHHCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCE TLTIDKNIQIFVEDSLDMMVKRYKPKDIFAVVMDAKTGEILGSSQRPTFNPQTREGFGEK EEEECCCEEEEEECCHHHHHHHCCCCCEEEEEEECCCCHHCCCCCCCCCCCCHHHHHHHH WANDLYQNTYEPGSTFKTFGLAAAIEENQYDPKAKYESGEREIDGITISDWNDVGWGTIT HHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCCCEECCEEEECCCCCCCEEEE MSKGFQLSSNVLMMKLQDKVGIDKMKTYYEKFGFGRSTQSLFDSEASGHISWNDELSQKV ECCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEECHHHHHHH SSFGQSTTVTPAQMLQAESAIVNEGKMLKPYFVKSIKSQDNNNIYTGKKDIIGQPISKST HHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEECCCHHHCCCCCCHHH AQKTMQQLYDVVNGKEMHAINYGLKDYKVAGKTGTAQVPDTEKGGYVQGANPYMVSFMGY HHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEEEECC APAKDPEVIIYYGMSLAQKNDAEAYAQGVSKGYTPLMENTLKYLNVGSPDKDNAKLIFNT CCCCCCCEEEEECCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEC PDVIGSKDDKASTEIENASLKPVRIGNGRTVTNQLPAKGTKLLADDKVFILTEGAKVMPD CCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCEEEECCEEEEEECCCEECCC ITGWSKRDLLMFSTLTGIEIQFKGNGYAINQSIDVNNPIKQGDKLTVELDSLDPLKQSPV CCCCCCCCEEEEEEECCEEEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCC YNDVIKAQLQQEKEVLKEQIKDEKQKNSN HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8244929; 9384377; 8289242 [H]