| Definition | Macrococcus caseolyticus JCSC5402, complete genome. |
|---|---|
| Accession | NC_011999 |
| Length | 2,102,324 |
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The map label for this gene is clpB [H]
Identifier: 222150851
GI number: 222150851
Start: 641608
End: 644361
Strand: Direct
Name: clpB [H]
Synonym: MCCL_0600
Alternate gene names: 222150851
Gene position: 641608-644361 (Clockwise)
Preceding gene: 222150849
Following gene: 222150852
Centisome position: 30.52
GC content: 40.99
Gene sequence:
>2754_bases GTGAAATGCAGACTGAACCATTGTTTTCACCTTCTTACGGATCTTTTTCAAATTTGTATTTATTATAACATAACAAATTT CAACTTTTATATCCGCAGCGTAATATTTGTATTCTCTTATAAAACATTTTATAATAGTATTATAGTCAAAGAAGGTCAAA CAGAGGTGAGTGAAGTGAATATAGAACAGATGACATTTAATGTACAGGGTGCATTGGAGCAAGCCCAGCATAAAGCGAGA GAAGATAAACTGCAGGCTATTGAAAGTGAGCACGTGCTATTACATTTTGCTGAAACAGCTGATAGTATGCTCGTTACAGT GTTTGAGCGTGCGAATCTGGACATCTCTAGATATAAAGCATTATTACAAGAGGTACTGGACAAGAAACCTCGAGTAGAAG GGGATGTGCAGTATGGCCAGTATATTGCTGGTAATCTCAGCGAGCTGATAAATAGGGCTCAGGCGCTGATGACAGAAATG GATGATCAGTACGTGTCAGCTGAACATATTATTTTAGCTGCTACAGAAGTTCATGAAGTTACACGTAACTTTGTAGGGAA TAAGAATGACATTATTAAAGAAATTATAATGAATATAAGAGGGGGAAATCATGTGACAACACAAAATCCAGAAGTTCAGT ATGAAGTATTGAAGAAGTATGGACGCGATCTTGTTGAAGAGGTGCGTAATGGTAAGATGGATCCAGTGATTGGTCGTGAT GATGAGATTCGCAATACAATTCGTATATTAAGTCGTAAAACGAAGAACAATCCGATATTAATCGGTGAACCGGGTGTCGG TAAGACAGCCATTGTTGAAGGTCTTGCACAGCGTATCGTGAAGCGTGACGTTCCAGATAGTCTATTAGACAAGACAATCT TTGAGCTTGATCTATCCGCACTCGTTGCAGGTGCGAAGTTCCGTGGTGAGTTTGAAGAGCGTTTAAAAGCAGTACTTAAA GAAGTTAAGGAATCTGACGGTAAAATTCTATTGTTTATCGATGAGATTCATATGCTTGTTGGGGCTGGTAAAACGGATGG CGCAATGGATGCAGGGAACATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGTGCCACAACGTTAAATG AGTATCGTGAGTATATCGAGAAAGATTCGGCGCTTGAGCGTCGTTTCCAGAAAGTAAATGTAAAAGAGCCGGATCTAGAA GATACGATTTCAATATTACGTGGTTTAAAGGAGCGTTACGAAGTGCATCACGGTGTACGTATACAGGATAATGCACTGGT CGCTGCTGCTGAATTATCAGATCGTTACATTACAGATCGCTTCCTCCCTGATAAAGCGATTGATCTGGTCGATCAGGCCT GTGCAACAATAAGAACGGAAATGGGCTCTAATCCGACAGAGCTTGATGCAGTAAATCGTCGCGTGTTACAGCTAGAAATT GAAGAGAATGCATTGAAGCATGAAAGTGATGCGAAATCAGAGGCAAGACTGCACGAACTGCAAAGAGAGCTTGCAGATGA GAAAGAACGTCAGCAGATGTTAACTGCGAAAGTTGAGAAAGAGAAAGAACAGATCAGCATTGTGCAGACTAAACGTGCAG AACTTGATGATTTTCGTAAGCAGCTGGAAGAAGCGCAAAGCAACTATAATCTGGAAAAAGCATCAGAACTGCAATATGCA AAGATTCCAGCAGTAGAGAAAGAACTTGCTGAACTAGAAGCACAGCTGCACGAGGAAACGAAAGATACGGACCGTCTGAT TCGTGAAGTAGTGACAGAAGAAGAAATTGGTTACATTGTGTCACAATGGACAGGTATTCCAGTGAACAAGCTCGTAGAAT CAGAGAAAGATAAATTATTACGACTTTCAGATATTCTGCATGAGCGCGTCGTTGGGCAAGATGAAGCAGTTGACTTAGTA TCTGATGCGGTTATCCGCGCGCGCGCAGGGATAAAGGATCCCAATCGTCCGATTGGTAGTTTCTTATTCTTAGGACCAAC CGGTGTCGGTAAGACTGAACTGGCGAAAGCATTAGCAAGCACATTATTTGATTCAGAGAAACATATGGTAAGAATCGATA TGAGTGAATATATGGAGAAACACTCAGTGAGCAGATTAATCGGTGCACCTCCTGGTTATGTAGGACATGAGGAAGGTGGC CAGCTGACAGAAGCAGTGCGCAGAAATCCATATACAGTCTTGTTGCTTGATGAGATTGAAAAGGCGCATAGTGATGTCTT TAACGTGCTGCTGCAATTGCTTGATGAAGGTCGATTAACAGACTCTCGTGGACGCAACGTCGATTTCAAGAATACAATTG TCATTATGACAAGTAACATCGGGTCACAATACTTATTGGATGGTATCGACAATGGCGAAATTAGTGAGGATGCAAGAAAT AATGTTACAGCTGCACTTCATCAGTACTTTAAGCCTGAGATACTGAACCGTATGGATGATATCATTATGTTTAAACCATT ATCTAGAGATGATATGACATTTATCGTCGATAAGATTATTAATCAGCTCAATGTCAGACTGATTGGTAATGGTGTGCGCG TCCACCTAACAGACGCAGTGAAAACATGGATTGTTGATACAGCGTATGAACCACAGTTTGGTGCACGACCATTGAAACGT TTCGTTCAGAAGGAAATTGAGACGCCGCTTGCAAAATTACTGATAAAAGAAGATTATACGGAAGGTACGGAAATTACTGT AGATAGAGTTGATGGTGAAGTTGTATTCCTGTAA
Upstream 100 bases:
>100_bases TTGAATCAATCGGATCTTCAGCCTGGAAGATATACTGATTTGCATCGAAGGTTTCTATCTTTCCTTCTTCCATGATGTAG TTGACGATACTTGTTGCTTC
Downstream 100 bases:
>100_bases CGCGATATAAAGAAAGTACCAGATGATTTATCATCTGGTACTTTCTTCAGTTAATATTAATGTTCTTCGTGATGGGGTAT CGGTTCATTCGGAATAATAT
Product: ATP-dependent Clp protease ATP-binding subunit ClpB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 917; Mature: 917
Protein sequence:
>917_residues MKCRLNHCFHLLTDLFQICIYYNITNFNFYIRSVIFVFSYKTFYNSIIVKEGQTEVSEVNIEQMTFNVQGALEQAQHKAR EDKLQAIESEHVLLHFAETADSMLVTVFERANLDISRYKALLQEVLDKKPRVEGDVQYGQYIAGNLSELINRAQALMTEM DDQYVSAEHIILAATEVHEVTRNFVGNKNDIIKEIIMNIRGGNHVTTQNPEVQYEVLKKYGRDLVEEVRNGKMDPVIGRD DEIRNTIRILSRKTKNNPILIGEPGVGKTAIVEGLAQRIVKRDVPDSLLDKTIFELDLSALVAGAKFRGEFEERLKAVLK EVKESDGKILLFIDEIHMLVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQKVNVKEPDLE DTISILRGLKERYEVHHGVRIQDNALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDAVNRRVLQLEI EENALKHESDAKSEARLHELQRELADEKERQQMLTAKVEKEKEQISIVQTKRAELDDFRKQLEEAQSNYNLEKASELQYA KIPAVEKELAELEAQLHEETKDTDRLIREVVTEEEIGYIVSQWTGIPVNKLVESEKDKLLRLSDILHERVVGQDEAVDLV SDAVIRARAGIKDPNRPIGSFLFLGPTGVGKTELAKALASTLFDSEKHMVRIDMSEYMEKHSVSRLIGAPPGYVGHEEGG QLTEAVRRNPYTVLLLDEIEKAHSDVFNVLLQLLDEGRLTDSRGRNVDFKNTIVIMTSNIGSQYLLDGIDNGEISEDARN NVTAALHQYFKPEILNRMDDIIMFKPLSRDDMTFIVDKIINQLNVRLIGNGVRVHLTDAVKTWIVDTAYEPQFGARPLKR FVQKEIETPLAKLLIKEDYTEGTEITVDRVDGEVVFL
Sequences:
>Translated_917_residues MKCRLNHCFHLLTDLFQICIYYNITNFNFYIRSVIFVFSYKTFYNSIIVKEGQTEVSEVNIEQMTFNVQGALEQAQHKAR EDKLQAIESEHVLLHFAETADSMLVTVFERANLDISRYKALLQEVLDKKPRVEGDVQYGQYIAGNLSELINRAQALMTEM DDQYVSAEHIILAATEVHEVTRNFVGNKNDIIKEIIMNIRGGNHVTTQNPEVQYEVLKKYGRDLVEEVRNGKMDPVIGRD DEIRNTIRILSRKTKNNPILIGEPGVGKTAIVEGLAQRIVKRDVPDSLLDKTIFELDLSALVAGAKFRGEFEERLKAVLK EVKESDGKILLFIDEIHMLVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQKVNVKEPDLE DTISILRGLKERYEVHHGVRIQDNALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDAVNRRVLQLEI EENALKHESDAKSEARLHELQRELADEKERQQMLTAKVEKEKEQISIVQTKRAELDDFRKQLEEAQSNYNLEKASELQYA KIPAVEKELAELEAQLHEETKDTDRLIREVVTEEEIGYIVSQWTGIPVNKLVESEKDKLLRLSDILHERVVGQDEAVDLV SDAVIRARAGIKDPNRPIGSFLFLGPTGVGKTELAKALASTLFDSEKHMVRIDMSEYMEKHSVSRLIGAPPGYVGHEEGG QLTEAVRRNPYTVLLLDEIEKAHSDVFNVLLQLLDEGRLTDSRGRNVDFKNTIVIMTSNIGSQYLLDGIDNGEISEDARN NVTAALHQYFKPEILNRMDDIIMFKPLSRDDMTFIVDKIINQLNVRLIGNGVRVHLTDAVKTWIVDTAYEPQFGARPLKR FVQKEIETPLAKLLIKEDYTEGTEITVDRVDGEVVFL >Mature_917_residues MKCRLNHCFHLLTDLFQICIYYNITNFNFYIRSVIFVFSYKTFYNSIIVKEGQTEVSEVNIEQMTFNVQGALEQAQHKAR EDKLQAIESEHVLLHFAETADSMLVTVFERANLDISRYKALLQEVLDKKPRVEGDVQYGQYIAGNLSELINRAQALMTEM DDQYVSAEHIILAATEVHEVTRNFVGNKNDIIKEIIMNIRGGNHVTTQNPEVQYEVLKKYGRDLVEEVRNGKMDPVIGRD DEIRNTIRILSRKTKNNPILIGEPGVGKTAIVEGLAQRIVKRDVPDSLLDKTIFELDLSALVAGAKFRGEFEERLKAVLK EVKESDGKILLFIDEIHMLVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQKVNVKEPDLE DTISILRGLKERYEVHHGVRIQDNALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDAVNRRVLQLEI EENALKHESDAKSEARLHELQRELADEKERQQMLTAKVEKEKEQISIVQTKRAELDDFRKQLEEAQSNYNLEKASELQYA KIPAVEKELAELEAQLHEETKDTDRLIREVVTEEEIGYIVSQWTGIPVNKLVESEKDKLLRLSDILHERVVGQDEAVDLV SDAVIRARAGIKDPNRPIGSFLFLGPTGVGKTELAKALASTLFDSEKHMVRIDMSEYMEKHSVSRLIGAPPGYVGHEEGG QLTEAVRRNPYTVLLLDEIEKAHSDVFNVLLQLLDEGRLTDSRGRNVDFKNTIVIMTSNIGSQYLLDGIDNGEISEDARN NVTAALHQYFKPEILNRMDDIIMFKPLSRDDMTFIVDKIINQLNVRLIGNGVRVHLTDAVKTWIVDTAYEPQFGARPLKR FVQKEIETPLAKLLIKEDYTEGTEITVDRVDGEVVFL
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=294, Percent_Identity=36.0544217687075, Blast_Score=184, Evalue=4e-46, Organism=Escherichia coli, GI1788943, Length=863, Percent_Identity=51.2166859791425, Blast_Score=851, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=320, Percent_Identity=43.125, Blast_Score=272, Evalue=6e-74, Organism=Saccharomyces cerevisiae, GI6320464, Length=715, Percent_Identity=52.3076923076923, Blast_Score=730, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6323002, Length=860, Percent_Identity=40.9302325581395, Blast_Score=627, Evalue=1e-180,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR017730 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 104229; Mature: 104229
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCRLNHCFHLLTDLFQICIYYNITNFNFYIRSVIFVFSYKTFYNSIIVKEGQTEVSEVN CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCC IEQMTFNVQGALEQAQHKAREDKLQAIESEHVLLHFAETADSMLVTVFERANLDISRYKA HHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHH LLQEVLDKKPRVEGDVQYGQYIAGNLSELINRAQALMTEMDDQYVSAEHIILAATEVHEV HHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHH TRNFVGNKNDIIKEIIMNIRGGNHVTTQNPEVQYEVLKKYGRDLVEEVRNGKMDPVIGRD HHHHCCCHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC DEIRNTIRILSRKTKNNPILIGEPGVGKTAIVEGLAQRIVKRDVPDSLLDKTIFELDLSA HHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LVAGAKFRGEFEERLKAVLKEVKESDGKILLFIDEIHMLVGAGKTDGAMDAGNMLKPMLA HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHH RGELHCIGATTLNEYREYIEKDSALERRFQKVNVKEPDLEDTISILRGLKERYEVHHGVR CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCE IQDNALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDAVNRRVLQLEI EECCCEEEEHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEE EENALKHESDAKSEARLHELQRELADEKERQQMLTAKVEKEKEQISIVQTKRAELDDFRK HHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLEEAQSNYNLEKASELQYAKIPAVEKELAELEAQLHEETKDTDRLIREVVTEEEIGYIV HHHHHHHCCCCCHHHCCCHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH SQWTGIPVNKLVESEKDKLLRLSDILHERVVGQDEAVDLVSDAVIRARAGIKDPNRPIGS HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC FLFLGPTGVGKTELAKALASTLFDSEKHMVRIDMSEYMEKHSVSRLIGAPPGYVGHEEGG EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCC QLTEAVRRNPYTVLLLDEIEKAHSDVFNVLLQLLDEGRLTDSRGRNVDFKNTIVIMTSNI HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC GSQYLLDGIDNGEISEDARNNVTAALHQYFKPEILNRMDDIIMFKPLSRDDMTFIVDKII CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHEEEECCCCCCHHHHHHHHHH NQLNVRLIGNGVRVHLTDAVKTWIVDTAYEPQFGARPLKRFVQKEIETPLAKLLIKEDYT HHHCEEEEECCEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC EGTEITVDRVDGEVVFL CCCEEEEEECCCCEEEC >Mature Secondary Structure MKCRLNHCFHLLTDLFQICIYYNITNFNFYIRSVIFVFSYKTFYNSIIVKEGQTEVSEVN CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCC IEQMTFNVQGALEQAQHKAREDKLQAIESEHVLLHFAETADSMLVTVFERANLDISRYKA HHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHH LLQEVLDKKPRVEGDVQYGQYIAGNLSELINRAQALMTEMDDQYVSAEHIILAATEVHEV HHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHH TRNFVGNKNDIIKEIIMNIRGGNHVTTQNPEVQYEVLKKYGRDLVEEVRNGKMDPVIGRD HHHHCCCHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC DEIRNTIRILSRKTKNNPILIGEPGVGKTAIVEGLAQRIVKRDVPDSLLDKTIFELDLSA HHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LVAGAKFRGEFEERLKAVLKEVKESDGKILLFIDEIHMLVGAGKTDGAMDAGNMLKPMLA HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHH RGELHCIGATTLNEYREYIEKDSALERRFQKVNVKEPDLEDTISILRGLKERYEVHHGVR CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCE IQDNALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDAVNRRVLQLEI EECCCEEEEHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEE EENALKHESDAKSEARLHELQRELADEKERQQMLTAKVEKEKEQISIVQTKRAELDDFRK HHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLEEAQSNYNLEKASELQYAKIPAVEKELAELEAQLHEETKDTDRLIREVVTEEEIGYIV HHHHHHHCCCCCHHHCCCHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH SQWTGIPVNKLVESEKDKLLRLSDILHERVVGQDEAVDLVSDAVIRARAGIKDPNRPIGS HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC FLFLGPTGVGKTELAKALASTLFDSEKHMVRIDMSEYMEKHSVSRLIGAPPGYVGHEEGG EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCC QLTEAVRRNPYTVLLLDEIEKAHSDVFNVLLQLLDEGRLTDSRGRNVDFKNTIVIMTSNI HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC GSQYLLDGIDNGEISEDARNNVTAALHQYFKPEILNRMDDIIMFKPLSRDDMTFIVDKII CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHEEEECCCCCCHHHHHHHHHH NQLNVRLIGNGVRVHLTDAVKTWIVDTAYEPQFGARPLKRFVQKEIETPLAKLLIKEDYT HHHCEEEEECCEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC EGTEITVDRVDGEVVFL CCCEEEEEECCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA