| Definition | Macrococcus caseolyticus JCSC5402, complete genome. |
|---|---|
| Accession | NC_011999 |
| Length | 2,102,324 |
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The map label for this gene is yurO [H]
Identifier: 222150603
GI number: 222150603
Start: 370039
End: 371331
Strand: Direct
Name: yurO [H]
Synonym: MCCL_0353
Alternate gene names: 222150603
Gene position: 370039-371331 (Clockwise)
Preceding gene: 222150601
Following gene: 222150604
Centisome position: 17.6
GC content: 34.11
Gene sequence:
>1293_bases ATGAAGAAAAAGACGTATTTATCGTGGGTAGCATTAATCGTATTAACACTTGTATTAGCGGCTTGTGGTAACTCAGGCTC AGGCGGAGGTACTGCAAAAGATGGAGACAAAACAACAGTAAATGTATTCCAGTTCAAAGTAGAATTCAAACAACAGTTTG AAGATATGGCCAAAAAATACATGGCTAAACATCCTGATGTTCAAATCAATATCGACACTGTTGGTGGTGGTAACGACTAC GGTCAAGCTTTAAAAGCAAAAATCGCTTCAAAAAATGAACCAGATATTTTCAATATCGGTGGTCCTGAAGATTTAGAAGT TCACAAAAATCGTTTAGCTGATTTATCAGATATGAAAGCTACTAAAGCAGTAATTAACGAAGATTTATTAGCACCTGTTC AAAAAGATGGCAAATCTTACGGTATCCCAATGAACCAGGAAGGATATGGTTTAATCTACAACAAAGAAATCTTCGAAAAA GCTGGTGTTAAAGCTGAAGATATTAAAACTTTAGATGATCTAGAAAAAGTTGCGGAAAAAATCGATGCTAAAAAATCGGA GCTAAAACTTTCTGGCGTATTCGCTTTACCTGCAAAAGAGAAATGGGTGTTAAGTGACCATGCTTCAAGCATGTTCTTAG CAACTGACTTTGATAATGATATTAAAAAAGCTTCTGAAGCAAAAACGTTAACATTCTCTAAAGCTGATCAATTAAAACAA TACTTAGATATTCAAAACAAATATTCAAAACAACCTGTTGCATCTTTAGATTACTCTCAACAAGTTGAAGAATTATTCTC AACTGGTAAAGTTGCAATGATTCAACAAGGTAACTGGGCATATCCTACAGTTGAAGGGGTAAACCCAGAACTTGCGAAAA ATATTGGTTTAATCGCAGTTCCAACTGGTGATAAAGAAGTTACAATGCCAGTAGGGGTTGCAAACAACTGGGCAGTTAAC AAAAAATCAGATGAAAAAGTTCAAAAAGCAGCAAAAGATTTCTTAGACTGGTTATATACTTCTGAAGAAGGTAAGAAAAT CGTTGTAGAAGATTTCAAATTTATTCCTGCTTATAAAGACTATGATACTGATAAGATTGCTGATCCATTATCAAAAGAAA TCTACAAATATTCACAAGAAGGTAAAACTTCTGCCTGGGTATTTAAAGGTTATCCAACTGGATACACTGATGACGCTTTA GGTGCTTATTTACAAGATTATTTAACTGGTAAATTAACATTTGATGAAGCAATTAAAAAATCACAAGATGCTTGGGCAAA AGCACGTAAATAA
Upstream 100 bases:
>100_bases GTTTGCAAAAAAATATTGTACTGACAAGAATAATGTGATAATCTTTAGATGTATTAAATGAAAACGTTTTCTTAAAAAAC TAAACAAAAGGAGATTGACG
Downstream 100 bases:
>100_bases AAACTTAAGGGAGAACGCTTCGGTGGTTCTCCCTTTTTTAAACAAAGGAGTGAGCATATGAAGACGAAAAGTTTAGCTTT CTGGTTATTTTTATTACCGG
Product: multiple sugar-binding transporter, binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MKKKTYLSWVALIVLTLVLAACGNSGSGGGTAKDGDKTTVNVFQFKVEFKQQFEDMAKKYMAKHPDVQINIDTVGGGNDY GQALKAKIASKNEPDIFNIGGPEDLEVHKNRLADLSDMKATKAVINEDLLAPVQKDGKSYGIPMNQEGYGLIYNKEIFEK AGVKAEDIKTLDDLEKVAEKIDAKKSELKLSGVFALPAKEKWVLSDHASSMFLATDFDNDIKKASEAKTLTFSKADQLKQ YLDIQNKYSKQPVASLDYSQQVEELFSTGKVAMIQQGNWAYPTVEGVNPELAKNIGLIAVPTGDKEVTMPVGVANNWAVN KKSDEKVQKAAKDFLDWLYTSEEGKKIVVEDFKFIPAYKDYDTDKIADPLSKEIYKYSQEGKTSAWVFKGYPTGYTDDAL GAYLQDYLTGKLTFDEAIKKSQDAWAKARK
Sequences:
>Translated_430_residues MKKKTYLSWVALIVLTLVLAACGNSGSGGGTAKDGDKTTVNVFQFKVEFKQQFEDMAKKYMAKHPDVQINIDTVGGGNDY GQALKAKIASKNEPDIFNIGGPEDLEVHKNRLADLSDMKATKAVINEDLLAPVQKDGKSYGIPMNQEGYGLIYNKEIFEK AGVKAEDIKTLDDLEKVAEKIDAKKSELKLSGVFALPAKEKWVLSDHASSMFLATDFDNDIKKASEAKTLTFSKADQLKQ YLDIQNKYSKQPVASLDYSQQVEELFSTGKVAMIQQGNWAYPTVEGVNPELAKNIGLIAVPTGDKEVTMPVGVANNWAVN KKSDEKVQKAAKDFLDWLYTSEEGKKIVVEDFKFIPAYKDYDTDKIADPLSKEIYKYSQEGKTSAWVFKGYPTGYTDDAL GAYLQDYLTGKLTFDEAIKKSQDAWAKARK >Mature_430_residues MKKKTYLSWVALIVLTLVLAACGNSGSGGGTAKDGDKTTVNVFQFKVEFKQQFEDMAKKYMAKHPDVQINIDTVGGGNDY GQALKAKIASKNEPDIFNIGGPEDLEVHKNRLADLSDMKATKAVINEDLLAPVQKDGKSYGIPMNQEGYGLIYNKEIFEK AGVKAEDIKTLDDLEKVAEKIDAKKSELKLSGVFALPAKEKWVLSDHASSMFLATDFDNDIKKASEAKTLTFSKADQLKQ YLDIQNKYSKQPVASLDYSQQVEELFSTGKVAMIQQGNWAYPTVEGVNPELAKNIGLIAVPTGDKEVTMPVGVANNWAVN KKSDEKVQKAAKDFLDWLYTSEEGKKIVVEDFKFIPAYKDYDTDKIADPLSKEIYKYSQEGKTSAWVFKGYPTGYTDDAL GAYLQDYLTGKLTFDEAIKKSQDAWAKARK
Specific function: Probably part of the binding-protein-dependent transport system yurMNO [H]
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 47702; Mature: 47702
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01037 SBP_BACTERIAL_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKTYLSWVALIVLTLVLAACGNSGSGGGTAKDGDKTTVNVFQFKVEFKQQFEDMAKKY CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHH MAKHPDVQINIDTVGGGNDYGQALKAKIASKNEPDIFNIGGPEDLEVHKNRLADLSDMKA HHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCHHHHHH TKAVINEDLLAPVQKDGKSYGIPMNQEGYGLIYNKEIFEKAGVKAEDIKTLDDLEKVAEK HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHHH IDAKKSELKLSGVFALPAKEKWVLSDHASSMFLATDFDNDIKKASEAKTLTFSKADQLKQ HCCHHHHEEEEEEEECCCCCCEEEECCCCCEEEEECCCHHHHHHHHHHEEEHHHHHHHHH YLDIQNKYSKQPVASLDYSQQVEELFSTGKVAMIQQGNWAYPTVEGVNPELAKNIGLIAV HHHHHHHHCCCCCHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEE PTGDKEVTMPVGVANNWAVNKKSDEKVQKAAKDFLDWLYTSEEGKKIVVEDFKFIPAYKD CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCEECCCCCC YDTDKIADPLSKEIYKYSQEGKTSAWVFKGYPTGYTDDALGAYLQDYLTGKLTFDEAIKK CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH SQDAWAKARK HHHHHHHCCC >Mature Secondary Structure MKKKTYLSWVALIVLTLVLAACGNSGSGGGTAKDGDKTTVNVFQFKVEFKQQFEDMAKKY CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHH MAKHPDVQINIDTVGGGNDYGQALKAKIASKNEPDIFNIGGPEDLEVHKNRLADLSDMKA HHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCHHHHHH TKAVINEDLLAPVQKDGKSYGIPMNQEGYGLIYNKEIFEKAGVKAEDIKTLDDLEKVAEK HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHHH IDAKKSELKLSGVFALPAKEKWVLSDHASSMFLATDFDNDIKKASEAKTLTFSKADQLKQ HCCHHHHEEEEEEEECCCCCCEEEECCCCCEEEEECCCHHHHHHHHHHEEEHHHHHHHHH YLDIQNKYSKQPVASLDYSQQVEELFSTGKVAMIQQGNWAYPTVEGVNPELAKNIGLIAV HHHHHHHHCCCCCHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEE PTGDKEVTMPVGVANNWAVNKKSDEKVQKAAKDFLDWLYTSEEGKKIVVEDFKFIPAYKD CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCEECCCCCC YDTDKIADPLSKEIYKYSQEGKTSAWVFKGYPTGYTDDALGAYLQDYLTGKLTFDEAIKK CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH SQDAWAKARK HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]