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The map label for this gene is ybaF [H]

Identifier: 222150475

GI number: 222150475

Start: 219460

End: 220257

Strand: Direct

Name: ybaF [H]

Synonym: MCCL_0225

Alternate gene names: 222150475

Gene position: 219460-220257 (Clockwise)

Preceding gene: 222150474

Following gene: 222150476

Centisome position: 10.44

GC content: 39.35

Gene sequence:

>798_bases
ATGCTTGATAAGATGATTCTTGGACGCTTTGTGCCTTTGCAGAGCTTTGTGCACCGGTTAGATCCACGCATGAAGATGGT
CTTCGTCTTTATAATGATGATCTTAATTTTCTTGATGAATAACTGGCAGACCTATGCAGTAGGCATTATCCTGATATTCA
TCATACTGAAGGCGTCCAACTTATCGTTTATGTTTTTATTCAATGGACTAAAACCAATACTATTCTTACTCATCTTTACA
TTGCTCATGCACATCTTCTTAACGAAAGGTGGTGCGACACTCGTTGATTACGGCATCATTAACATTCAGTCACAAGGAGT
AATAATGGGTATTATGATTAGTTTACGCTTTATACTTATTATCTTCTTAACAACGATTATGACACTGACGACGAACCCGA
TTGAACTCACAGATGCAATAGAATCTCTACTAAAACCATTTAAGAAACTGAAACTCCCGGTTCATGAACTGGCGCTGATG
ATGAGTATTGCGCTGCGTTTTATACCAACGCTTATGGATGAAACACAAAAAGTGATGAAAGCACAAATGTCGCGTGGCAG
TGATATGACAGCAGGAACGCTTAAAGAGCGTATTAAAGCCGTGATCCCATTACTTGTACCACTCTTTGTGTCTGCATTTA
AACGCGCAGAAGACTTAGCCATCGCAATGGAAGTGAGAGGTTATAAAGGGGATGCTGGTCGTACAAAATATCGTAAGCTC
GACTGGCATACATATGACACGTTGTCACTCTTAACACTTATACCGATAACACTACTCATCCTCTATTTAAAAAACTAG

Upstream 100 bases:

>100_bases
TTGCAACGACAAGTTGAAGCGAAACATAATATAAAGTTTCCGAAGCTTGCACTCGATATAGAAACGTTTGCTGATATGTA
TAAGAACTGGAGGGAATCCG

Downstream 100 bases:

>100_bases
GAGCATATTATGGAACGAATATTATTACAACTACAATATAATGGTGTGAACTTTCAAGGATTTCAGATACAAAACGAAGG
ACGCACCGTACAATATGAGT

Product: cobalt ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MLDKMILGRFVPLQSFVHRLDPRMKMVFVFIMMILIFLMNNWQTYAVGIILIFIILKASNLSFMFLFNGLKPILFLLIFT
LLMHIFLTKGGATLVDYGIINIQSQGVIMGIMISLRFILIIFLTTIMTLTTNPIELTDAIESLLKPFKKLKLPVHELALM
MSIALRFIPTLMDETQKVMKAQMSRGSDMTAGTLKERIKAVIPLLVPLFVSAFKRAEDLAIAMEVRGYKGDAGRTKYRKL
DWHTYDTLSLLTLIPITLLILYLKN

Sequences:

>Translated_265_residues
MLDKMILGRFVPLQSFVHRLDPRMKMVFVFIMMILIFLMNNWQTYAVGIILIFIILKASNLSFMFLFNGLKPILFLLIFT
LLMHIFLTKGGATLVDYGIINIQSQGVIMGIMISLRFILIIFLTTIMTLTTNPIELTDAIESLLKPFKKLKLPVHELALM
MSIALRFIPTLMDETQKVMKAQMSRGSDMTAGTLKERIKAVIPLLVPLFVSAFKRAEDLAIAMEVRGYKGDAGRTKYRKL
DWHTYDTLSLLTLIPITLLILYLKN
>Mature_265_residues
MLDKMILGRFVPLQSFVHRLDPRMKMVFVFIMMILIFLMNNWQTYAVGIILIFIILKASNLSFMFLFNGLKPILFLLIFT
LLMHIFLTKGGATLVDYGIINIQSQGVIMGIMISLRFILIIFLTTIMTLTTNPIELTDAIESLLKPFKKLKLPVHELALM
MSIALRFIPTLMDETQKVMKAQMSRGSDMTAGTLKERIKAVIPLLVPLFVSAFKRAEDLAIAMEVRGYKGDAGRTKYRKL
DWHTYDTLSLLTLIPITLLILYLKN

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30297; Mature: 30297

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.2 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKMILGRFVPLQSFVHRLDPRMKMVFVFIMMILIFLMNNWQTYAVGIILIFIILKASN
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
LSFMFLFNGLKPILFLLIFTLLMHIFLTKGGATLVDYGIINIQSQGVIMGIMISLRFILI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCEEEECCCCHHHHHHHHHHHHHH
IFLTTIMTLTTNPIELTDAIESLLKPFKKLKLPVHELALMMSIALRFIPTLMDETQKVMK
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMSRGSDMTAGTLKERIKAVIPLLVPLFVSAFKRAEDLAIAMEVRGYKGDAGRTKYRKL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCC
DWHTYDTLSLLTLIPITLLILYLKN
CCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDKMILGRFVPLQSFVHRLDPRMKMVFVFIMMILIFLMNNWQTYAVGIILIFIILKASN
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
LSFMFLFNGLKPILFLLIFTLLMHIFLTKGGATLVDYGIINIQSQGVIMGIMISLRFILI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCEEEECCCCHHHHHHHHHHHHHH
IFLTTIMTLTTNPIELTDAIESLLKPFKKLKLPVHELALMMSIALRFIPTLMDETQKVMK
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMSRGSDMTAGTLKERIKAVIPLLVPLFVSAFKRAEDLAIAMEVRGYKGDAGRTKYRKL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCC
DWHTYDTLSLLTLIPITLLILYLKN
CCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]