| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is yheS [H]
Identifier: 222111087
GI number: 222111087
Start: 2017945
End: 2019915
Strand: Direct
Name: yheS [H]
Synonym: Dtpsy_1894
Alternate gene names: 222111087
Gene position: 2017945-2019915 (Clockwise)
Preceding gene: 222111086
Following gene: 222111092
Centisome position: 53.15
GC content: 66.92
Gene sequence:
>1971_bases ATGATCACCCTGAAGAACGTCACGCTGCGCCGCAGCGCCAAGGTATTGCTCGACGGTGTCTCCGTCACCATCAACCCCGG GGAGCATGTCGGCCTGGTCGGGCGTAACGGCGCTGGCAAGTCCACGCTGTTTGCGCTGCTCAATGGTTCGCTGCACGAAG ACGGCGGTGACTTCGTCCTGCCCGCGGCCTGGCGCATGGCCCAGGTGGCGCAAAACATGCCAGAGACGGACGAGTCTGCC ACCGCCTTCGTGTTGGATGGCGACACTCGCCTGACGGAGCTGCGCCAGGCGCTGCACACGGCCGAGCAGGCGGGTGATGG CATGGCCATCGCCCAGGCGCACTCCGACCTGGCAGACGCCGGTGCGCACGACGCGACCGCACGCGCGCAGGCGCTCATCC TGGGGCTGGGCTTTCAGGTGGCGGAGCTGGAGCGCCCGGTCAACAGCTTCTCCGGCGGTTGGCGCATGCGCCTGCAACTG GCGCGCGCGCTGATGTGCCCCAGCGACCTGCTGCTGCTGGACGAGCCCACCAACCACTTGGACCTGGACGCGCTGGTATG GCTGGAAGCCTGGCTGCAGCGCTACAACGGTACCTTGGTCGTCATCAGCCACGACCGCGAATTCCTCGACGCCGTGACCC AGGTCACGCTGCACATCGATAACGCGCGCCTGACCCGCTACGGCGGCAACTACAGCAAGTTCGAGGAGCTGCGCGCCCAG CAGCTGGAACTGCAGCAGTCGGCCTATGAGCGCCAGCAGGACAAGATCGCGCACCTGCAGAAATTCATCGATCGGTTCAA GGCCAAGGCCACCAAGGCCAAACAGGCACAAAGCCGCGTGAAGGCGCTGGAGCGCATGGAGAAGATCGCCCCCGTGCTGG CCTCGGCCGACTTCACCTTCGAGTTCAAGGAGCCGGCCAACCTGCCCAACCCGATGCTGGCCATCACCGACGCGTCCTTC GGTTATCGCGCCGAGGATGGCAGCGAGACCACCATCCTGCGCCACGTGAACCGCTCGGTACTGGCCGGCCAGCGCATCGG CATTTTGGGCGCCAACGGCCAGGGCAAGTCCACGCTGGTCAAGACCATCGCCCGCACCATGGCGCCGCTCTCCGGCACCC TGACCGAGGGCAAGGGCCTGTCGATCGGCTACTTCGCGCAGCAGGAGCTGGACGTGCTGCGTCCCGGCGATAACCCGCTG GAGCACATGGTGCGCCTGGCGCGCGAACTGGGTGCCCAGGCCCAGGAACCCAGCCGCGAACAGGACCTGCGCAACTTCCT GGGCAGCTTCAACTTCAGCGGCGACATGGTGCACCAGGCCGTGGGCACCATGAGCGGCGGGGAGAAGGCCCGCCTGGTGC TGGCCATGATCGTCTGGCAGCGTCCCAACCTGTTGCTGCTGGACGAGCCCACCAATCACCTGGACCTGGCCACGCGCGAG GCGTTGTCCATGGCGCTCAACGAGTTCGAGGGCACGGTGATGCTGGTCAGCCACGACCGGGCGCTGCTGCGCGCCGTGTG CGATGAGTTCTGGCTGGTGGGCCGGGGTGCCGTGGCGCCCTTCGACGGCGATCTGGACGATTACCAGCGCTACCTGCTTG AGGAGTCCAAGCGCCTGCGCGAACTGGCCCGCGCAGCCGAGCAGGCGGTCGTTGCCGAGGCCGCGCCCCCAACCGCCACT GCCGCCCCTCCCCAGCGCGACGCACGCGAGCAGCGCCGCCAGGAAGCCCAGGCCCGCCAACAGTTGGCCGAGAAAACCCG CCCCCTCAAGCGAGAGCTTGAAAAAATCGACCAGCGCCTGGAAGCCCTGAACCGGGAAAAAGCGCAGTTGGAAGAACGGC TCATGCAGCCGTTGCCCCCCGCGGAGATCGCGGAATGCGGGCGGAGGCTCAAGGACTGCGCCGAAGAGGTGACAGCCCTT GAGGAAAAGTGGCTGGATGTTTCCTCAGCGCTGGAGGAACTGGCGCGCTGA
Upstream 100 bases:
>100_bases CCAGGTGCTGCTGCTCACGCGCCAGGCCCTGCTCCCACTCGCTCCCGCAAAGTGACGGCGCCGGCCCGGCCGGCCCCCGC CCCGTCCATTGGTTTGACCC
Downstream 100 bases:
>100_bases GGGGACACAGGTATTTTTGGTATCTGTATAAAAACAGCCTCCAAGCCTTACGCATAAAGCGCAGACAGCTCCTTTTTCAG GAGTAAATTCTGGGGATATC
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 656; Mature: 656
Protein sequence:
>656_residues MITLKNVTLRRSAKVLLDGVSVTINPGEHVGLVGRNGAGKSTLFALLNGSLHEDGGDFVLPAAWRMAQVAQNMPETDESA TAFVLDGDTRLTELRQALHTAEQAGDGMAIAQAHSDLADAGAHDATARAQALILGLGFQVAELERPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLQRYNGTLVVISHDREFLDAVTQVTLHIDNARLTRYGGNYSKFEELRAQ QLELQQSAYERQQDKIAHLQKFIDRFKAKATKAKQAQSRVKALERMEKIAPVLASADFTFEFKEPANLPNPMLAITDASF GYRAEDGSETTILRHVNRSVLAGQRIGILGANGQGKSTLVKTIARTMAPLSGTLTEGKGLSIGYFAQQELDVLRPGDNPL EHMVRLARELGAQAQEPSREQDLRNFLGSFNFSGDMVHQAVGTMSGGEKARLVLAMIVWQRPNLLLLDEPTNHLDLATRE ALSMALNEFEGTVMLVSHDRALLRAVCDEFWLVGRGAVAPFDGDLDDYQRYLLEESKRLRELARAAEQAVVAEAAPPTAT AAPPQRDAREQRRQEAQARQQLAEKTRPLKRELEKIDQRLEALNREKAQLEERLMQPLPPAEIAECGRRLKDCAEEVTAL EEKWLDVSSALEELAR
Sequences:
>Translated_656_residues MITLKNVTLRRSAKVLLDGVSVTINPGEHVGLVGRNGAGKSTLFALLNGSLHEDGGDFVLPAAWRMAQVAQNMPETDESA TAFVLDGDTRLTELRQALHTAEQAGDGMAIAQAHSDLADAGAHDATARAQALILGLGFQVAELERPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLQRYNGTLVVISHDREFLDAVTQVTLHIDNARLTRYGGNYSKFEELRAQ QLELQQSAYERQQDKIAHLQKFIDRFKAKATKAKQAQSRVKALERMEKIAPVLASADFTFEFKEPANLPNPMLAITDASF GYRAEDGSETTILRHVNRSVLAGQRIGILGANGQGKSTLVKTIARTMAPLSGTLTEGKGLSIGYFAQQELDVLRPGDNPL EHMVRLARELGAQAQEPSREQDLRNFLGSFNFSGDMVHQAVGTMSGGEKARLVLAMIVWQRPNLLLLDEPTNHLDLATRE ALSMALNEFEGTVMLVSHDRALLRAVCDEFWLVGRGAVAPFDGDLDDYQRYLLEESKRLRELARAAEQAVVAEAAPPTAT AAPPQRDAREQRRQEAQARQQLAEKTRPLKRELEKIDQRLEALNREKAQLEERLMQPLPPAEIAECGRRLKDCAEEVTAL EEKWLDVSSALEELAR >Mature_656_residues MITLKNVTLRRSAKVLLDGVSVTINPGEHVGLVGRNGAGKSTLFALLNGSLHEDGGDFVLPAAWRMAQVAQNMPETDESA TAFVLDGDTRLTELRQALHTAEQAGDGMAIAQAHSDLADAGAHDATARAQALILGLGFQVAELERPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLQRYNGTLVVISHDREFLDAVTQVTLHIDNARLTRYGGNYSKFEELRAQ QLELQQSAYERQQDKIAHLQKFIDRFKAKATKAKQAQSRVKALERMEKIAPVLASADFTFEFKEPANLPNPMLAITDASF GYRAEDGSETTILRHVNRSVLAGQRIGILGANGQGKSTLVKTIARTMAPLSGTLTEGKGLSIGYFAQQELDVLRPGDNPL EHMVRLARELGAQAQEPSREQDLRNFLGSFNFSGDMVHQAVGTMSGGEKARLVLAMIVWQRPNLLLLDEPTNHLDLATRE ALSMALNEFEGTVMLVSHDRALLRAVCDEFWLVGRGAVAPFDGDLDDYQRYLLEESKRLRELARAAEQAVVAEAAPPTAT AAPPQRDAREQRRQEAQARQQLAEKTRPLKRELEKIDQRLEALNREKAQLEERLMQPLPPAEIAECGRRLKDCAEEVTAL EEKWLDVSSALEELAR
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=546, Percent_Identity=36.6300366300366, Blast_Score=338, Evalue=7e-93, Organism=Homo sapiens, GI10947137, Length=536, Percent_Identity=33.2089552238806, Blast_Score=313, Evalue=3e-85, Organism=Homo sapiens, GI27881506, Length=536, Percent_Identity=33.2089552238806, Blast_Score=313, Evalue=4e-85, Organism=Homo sapiens, GI69354671, Length=549, Percent_Identity=34.2440801457195, Blast_Score=258, Evalue=2e-68, Organism=Homo sapiens, GI10947135, Length=549, Percent_Identity=34.2440801457195, Blast_Score=258, Evalue=2e-68, Organism=Escherichia coli, GI1789751, Length=660, Percent_Identity=47.8787878787879, Blast_Score=608, Evalue=1e-175, Organism=Escherichia coli, GI1787041, Length=539, Percent_Identity=32.8385899814471, Blast_Score=295, Evalue=7e-81, Organism=Escherichia coli, GI1787182, Length=630, Percent_Identity=29.3650793650794, Blast_Score=219, Evalue=6e-58, Organism=Escherichia coli, GI2367384, Length=559, Percent_Identity=30.0536672629696, Blast_Score=204, Evalue=1e-53, Organism=Escherichia coli, GI1790190, Length=527, Percent_Identity=22.011385199241, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI87081782, Length=549, Percent_Identity=25.3187613843352, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1787758, Length=193, Percent_Identity=31.0880829015544, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=30.3482587064677, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1786803, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1788506, Length=264, Percent_Identity=21.5909090909091, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI48994883, Length=231, Percent_Identity=25.5411255411255, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1786345, Length=207, Percent_Identity=30.4347826086957, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI87081709, Length=219, Percent_Identity=24.6575342465753, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1787164, Length=204, Percent_Identity=28.921568627451, Blast_Score=63, Evalue=5e-11, Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=27.1028037383178, Blast_Score=62, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17553372, Length=547, Percent_Identity=38.2084095063985, Blast_Score=352, Evalue=5e-97, Organism=Caenorhabditis elegans, GI17555318, Length=564, Percent_Identity=32.8014184397163, Blast_Score=298, Evalue=4e-81, Organism=Caenorhabditis elegans, GI17559834, Length=563, Percent_Identity=32.3268206039076, Blast_Score=288, Evalue=5e-78, Organism=Caenorhabditis elegans, GI25146777, Length=304, Percent_Identity=24.0131578947368, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193208177, Length=222, Percent_Identity=26.1261261261261, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115533592, Length=206, Percent_Identity=27.1844660194175, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=546, Percent_Identity=34.6153846153846, Blast_Score=323, Evalue=5e-89, Organism=Saccharomyces cerevisiae, GI6320874, Length=546, Percent_Identity=32.967032967033, Blast_Score=289, Evalue=1e-78, Organism=Saccharomyces cerevisiae, GI6325030, Length=391, Percent_Identity=29.6675191815857, Blast_Score=148, Evalue=2e-36, Organism=Saccharomyces cerevisiae, GI6324314, Length=388, Percent_Identity=27.8350515463918, Blast_Score=144, Evalue=5e-35, Organism=Saccharomyces cerevisiae, GI6323278, Length=394, Percent_Identity=27.1573604060914, Blast_Score=134, Evalue=6e-32, Organism=Drosophila melanogaster, GI24666836, Length=544, Percent_Identity=39.7058823529412, Blast_Score=383, Evalue=1e-106, Organism=Drosophila melanogaster, GI24642252, Length=538, Percent_Identity=34.0148698884758, Blast_Score=317, Evalue=1e-86, Organism=Drosophila melanogaster, GI18859989, Length=538, Percent_Identity=34.0148698884758, Blast_Score=317, Evalue=1e-86, Organism=Drosophila melanogaster, GI24641342, Length=550, Percent_Identity=32.5454545454545, Blast_Score=288, Evalue=1e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 72615; Mature: 72615
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITLKNVTLRRSAKVLLDGVSVTINPGEHVGLVGRNGAGKSTLFALLNGSLHEDGGDFVL CEEECCCHHHHHHHHEEECCEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEC PAAWRMAQVAQNMPETDESATAFVLDGDTRLTELRQALHTAEQAGDGMAIAQAHSDLADA HHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHC GAHDATARAQALILGLGFQVAELERPVNSFSGGWRMRLQLARALMCPSDLLLLDEPTNHL CCCCHHHHHHHHHHHCCCHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC DLDALVWLEAWLQRYNGTLVVISHDREFLDAVTQVTLHIDNARLTRYGGNYSKFEELRAQ CHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEECCCEEEECCCCHHHHHHHHHH QLELQQSAYERQQDKIAHLQKFIDRFKAKATKAKQAQSRVKALERMEKIAPVLASADFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE EFKEPANLPNPMLAITDASFGYRAEDGSETTILRHVNRSVLAGQRIGILGANGQGKSTLV EECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH KTIARTMAPLSGTLTEGKGLSIGYFAQQELDVLRPGDNPLEHMVRLARELGAQAQEPSRE HHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHH QDLRNFLGSFNFSGDMVHQAVGTMSGGEKARLVLAMIVWQRPNLLLLDEPTNHLDLATRE HHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH ALSMALNEFEGTVMLVSHDRALLRAVCDEFWLVGRGAVAPFDGDLDDYQRYLLEESKRLR HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH ELARAAEQAVVAEAAPPTATAAPPQRDAREQRRQEAQARQQLAEKTRPLKRELEKIDQRL HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH EALNREKAQLEERLMQPLPPAEIAECGRRLKDCAEEVTALEEKWLDVSSALEELAR HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure MITLKNVTLRRSAKVLLDGVSVTINPGEHVGLVGRNGAGKSTLFALLNGSLHEDGGDFVL CEEECCCHHHHHHHHEEECCEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEC PAAWRMAQVAQNMPETDESATAFVLDGDTRLTELRQALHTAEQAGDGMAIAQAHSDLADA HHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHC GAHDATARAQALILGLGFQVAELERPVNSFSGGWRMRLQLARALMCPSDLLLLDEPTNHL CCCCHHHHHHHHHHHCCCHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC DLDALVWLEAWLQRYNGTLVVISHDREFLDAVTQVTLHIDNARLTRYGGNYSKFEELRAQ CHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEECCCEEEECCCCHHHHHHHHHH QLELQQSAYERQQDKIAHLQKFIDRFKAKATKAKQAQSRVKALERMEKIAPVLASADFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE EFKEPANLPNPMLAITDASFGYRAEDGSETTILRHVNRSVLAGQRIGILGANGQGKSTLV EECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH KTIARTMAPLSGTLTEGKGLSIGYFAQQELDVLRPGDNPLEHMVRLARELGAQAQEPSRE HHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHH QDLRNFLGSFNFSGDMVHQAVGTMSGGEKARLVLAMIVWQRPNLLLLDEPTNHLDLATRE HHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH ALSMALNEFEGTVMLVSHDRALLRAVCDEFWLVGRGAVAPFDGDLDDYQRYLLEESKRLR HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH ELARAAEQAVVAEAAPPTATAAPPQRDAREQRRQEAQARQQLAEKTRPLKRELEKIDQRL HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH EALNREKAQLEERLMQPLPPAEIAECGRRLKDCAEEVTALEEKWLDVSSALEELAR HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]