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The map label for this gene is dapD [H]

Identifier: 222111083

GI number: 222111083

Start: 2013710

End: 2014534

Strand: Direct

Name: dapD [H]

Synonym: Dtpsy_1890

Alternate gene names: 222111083

Gene position: 2013710-2014534 (Clockwise)

Preceding gene: 222111082

Following gene: 222111084

Centisome position: 53.04

GC content: 66.79

Gene sequence:

>825_bases
ATGACCCAACAATTGCAGACCCTGATCGACAACGCCTGGGACAACCGCGCCAGCCTCTCGCCCTCCGCCGCGCCCAAGGA
AGTGGTGGATGCCGTCGAGCATGTGATCGCCGAACTCAACAACGGCAGGCTGCGCGTGGCCACGCGCGAGGGCGTGGGCC
AGTGGACCGTGCACCAGTGGATCAAGAAGGCCGTGCTGCTGTCGTTCCGCCTGAAGGACAACGAGCTCATGAAGGCCGGC
GACCTGGGCTTCTTCGACAAGGTGCCCACCAAGTTCGCCCACCTGTCCGCCGACGAGATGGCCGCCACCGGCGTGCGCGT
GGTGCCGCCGGCCGTGGCGCGCCGCGGCAGCTTCATCGCCAAGGGCGCGATCCTGATGCCCAGCTACGTGAACATCGGCG
CCTATGTGGACGAAGGCACCATGGTGGACACCTGGGCCACCGTGGGCTCGTGCGCGCAGGTCGGAAAGAACGTGCACCTG
TCCGGCGGCGTGGGGCTGGGCGGCGTGCTCGAGCCCCTGCAGGCCAACCCGACCATCATCGAGGACAACTGCTTCATCGG
CGCGCGCTCCGAAGTCGTCGAGGGCGTGATCGTCGAAGAGAACTCGGTCATCAGCATGGGCGTGTACATCGGTCAGAGCA
CGCCGATCTACGACCGCACCACGGGCGAGACCACCTACGGCCGCGTGCCCGCTGGCTCGGTGGTGGTCAGCGGCAACCTA
CCCAAGGACGGCGGCCGCTACAGCATGTACGCGGCCATCATCGTCAAGAAGGTGGACGCCAAGACCCGCTCCACCACCAG
CCTGAACGACCTGCTGCGCGACTGA

Upstream 100 bases:

>100_bases
CCCAGCGCTTGCGCATGGCCCTTGTGGCCGAGACCGCGGAATGCGCCGAAGCGGCCTCGCGCATCGTGCAATTCATCCAA
TCCCGTACGTTATTCCATCC

Downstream 100 bases:

>100_bases
AGCTACGCCGCACCGGCACTGCACGCATACATAACCAGCACTGAGAGGGAACCAGCATGAGCACGATGGAGCGGATTCTG
CGCCTGATGGCCGACAAGAA

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate n-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MTQQLQTLIDNAWDNRASLSPSAAPKEVVDAVEHVIAELNNGRLRVATREGVGQWTVHQWIKKAVLLSFRLKDNELMKAG
DLGFFDKVPTKFAHLSADEMAATGVRVVPPAVARRGSFIAKGAILMPSYVNIGAYVDEGTMVDTWATVGSCAQVGKNVHL
SGGVGLGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEENSVISMGVYIGQSTPIYDRTTGETTYGRVPAGSVVVSGNL
PKDGGRYSMYAAIIVKKVDAKTRSTTSLNDLLRD

Sequences:

>Translated_274_residues
MTQQLQTLIDNAWDNRASLSPSAAPKEVVDAVEHVIAELNNGRLRVATREGVGQWTVHQWIKKAVLLSFRLKDNELMKAG
DLGFFDKVPTKFAHLSADEMAATGVRVVPPAVARRGSFIAKGAILMPSYVNIGAYVDEGTMVDTWATVGSCAQVGKNVHL
SGGVGLGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEENSVISMGVYIGQSTPIYDRTTGETTYGRVPAGSVVVSGNL
PKDGGRYSMYAAIIVKKVDAKTRSTTSLNDLLRD
>Mature_273_residues
TQQLQTLIDNAWDNRASLSPSAAPKEVVDAVEHVIAELNNGRLRVATREGVGQWTVHQWIKKAVLLSFRLKDNELMKAGD
LGFFDKVPTKFAHLSADEMAATGVRVVPPAVARRGSFIAKGAILMPSYVNIGAYVDEGTMVDTWATVGSCAQVGKNVHLS
GGVGLGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEENSVISMGVYIGQSTPIYDRTTGETTYGRVPAGSVVVSGNLP
KDGGRYSMYAAIIVKKVDAKTRSTTSLNDLLRD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=271, Percent_Identity=69.0036900369004, Blast_Score=364, Evalue=1e-102,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29319; Mature: 29188

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQQLQTLIDNAWDNRASLSPSAAPKEVVDAVEHVIAELNNGRLRVATREGVGQWTVHQW
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
IKKAVLLSFRLKDNELMKAGDLGFFDKVPTKFAHLSADEMAATGVRVVPPAVARRGSFIA
HHHHHHHHEEECCCHHHCCCCCCCHHHCCHHHHHCCHHHHHHCCCEECCHHHHHCCCEEE
KGAILMPSYVNIGAYVDEGTMVDTWATVGSCAQVGKNVHLSGGVGLGGVLEPLQANPTII
CCEEECCCEEECCEEECCCCEEEHHHHHHHHHHHCCCEEEECCCCCCHHHCCCCCCCCEE
EDNCFIGARSEVVEGVIVEENSVISMGVYIGQSTPIYDRTTGETTYGRVPAGSVVVSGNL
ECCCEECCHHHHHCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCC
PKDGGRYSMYAAIIVKKVDAKTRSTTSLNDLLRD
CCCCCCCEEEEEEEEEHHCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
TQQLQTLIDNAWDNRASLSPSAAPKEVVDAVEHVIAELNNGRLRVATREGVGQWTVHQW
CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
IKKAVLLSFRLKDNELMKAGDLGFFDKVPTKFAHLSADEMAATGVRVVPPAVARRGSFIA
HHHHHHHHEEECCCHHHCCCCCCCHHHCCHHHHHCCHHHHHHCCCEECCHHHHHCCCEEE
KGAILMPSYVNIGAYVDEGTMVDTWATVGSCAQVGKNVHLSGGVGLGGVLEPLQANPTII
CCEEECCCEEECCEEECCCCEEEHHHHHHHHHHHCCCEEEECCCCCCHHHCCCCCCCCEE
EDNCFIGARSEVVEGVIVEENSVISMGVYIGQSTPIYDRTTGETTYGRVPAGSVVVSGNL
ECCCEECCHHHHHCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCC
PKDGGRYSMYAAIIVKKVDAKTRSTTSLNDLLRD
CCCCCCCEEEEEEEEEHHCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA