| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222110959
Identifier: 222110959
GI number: 222110959
Start: 1877421
End: 1878830
Strand: Direct
Name: 222110959
Synonym: Dtpsy_1766
Alternate gene names: NA
Gene position: 1877421-1878830 (Clockwise)
Preceding gene: 222110958
Following gene: 222110960
Centisome position: 49.45
GC content: 75.46
Gene sequence:
>1410_bases ATGCATTGGCTTGCCTGGCACTTGCCACCCATTGAGGCCACGACCGGGCCCGCCACCGGGTCCGTGATCGGCCTGCCGCC TGCCGCGCAGGGCTGGTGGGCGCTGCGCTTCACGCCGCGCGTGGCCCTTGTGGACGAAGCGCTGCTGCTGGAGGTGAGCG GTACCGAACGCCTGTGGGGCGGGCGCGCCGCTCTGCAAAGCCTGCTGCGTGACCACGCGCCCCCCGGGCCCGAAACCCTG GAGGGCGGGTCTCTCTGGGCCAGTGCGCCCACGGCGCTGCAAGCCCTGGCCCTGCTGCGCCTGCAGCGCCAGGGCCGGCC CGTGCCGCGGCGGCTGCCGCACGATCTGCCGGTTGCCACCCTCTCGGCGCTGCGCCCGCATGCCCAGGCGCTGCAGCAGC TGGGCTGCCGCACCTGGGGCGCCGTGCGTGCGCTGCCGCGCGCCGGGGTGGCGCGGCGCTTCGGCGCCGAACCCCTGGCG GCGCTGGACCGCGCTTGGGGCGACGCACCGCATGGCCTGGACTGGATCACGCTGCCCGAGCAGTTCGCGCTGGAGCTGGA ACTGCCCGCGCTGGCCGAATCGGCCCCCGCGCTGCTGTGGGCCGGCCAGCGCCTGCTGGATGCACTGCAGGGCTGGCTGC GCGCGCGCCACCAGGGCGTGCAGGCGCTGGAGCTGGCCTGGCGCCATGACCTGCGCCGTATCGACGGCGTGGACCTGCCC CCCTGGCAGAGCCTCACGCTGCGCACGGCCGAGCCGCTGCAGGGCATGGCGCACCTGCGCCGCCTGCTGGCCGAGCGCCT GGCGCACCAGCGCCTGGCCGCGCCCGTGAGCCGGCTGGCGCTGCGCAGCCTGCAAACCGCGCCCATGCCACAGGCCAGCG CGGACCTGCTGCCGCCCCAGCCAGGCGACGCGGGGGCGGGGCAGGGCGAGCCCTGGCACCAGTTCGTCGAGCGCCTCTCG GCCCGCCTGGGCGCGGACAGTCTGCGGGTGCCGCGGTCCCAGGCAGACCACCGTCCCGAATGCATGCAACAGTGGCAACC GGCCTTGGCGGCCCGCGCCGCGCCGCCGGCGCCCGCACAGGACTGCACCCTCGCGCCCTTGCTTCCGCCCTGGCTCGTGC GGCCTCCGCGGCCGCTGGCCCTGCGCGGCAGCCGGCCTTGCCTGCACGGCCAGCCGCTGCGCTTGCTGGACGGGCCGCAG CGCGTGGAAACCGGCTGGTGGGAGGCCGCAGCGGACCTGAACGACGACGAGAGCGATGTGCAGGTCAGTGCACACAATGG CGCGCAGGACGGTGGCTCGGCCCTGGTGCGGCGCGACTATTTCATTGCCCACAACCCGGCGGCGGGCACCGTCTGGGTCT TTCGCGACCGGGCGACGGGCGGCTGGTTCTTGCAGGGGGTGTACGGATGA
Upstream 100 bases:
>100_bases CCGGTACTGGCCGCGGCGCTGCAGGCACAGGCCCAATGGCGCCGCCAGGTGCAGGCGGCCGCCTGGGGCATGGGGGGCCG CACACCGCAGGAGGTGGAGG
Downstream 100 bases:
>100_bases TGCTGCCCGCCTACGCAGAGCTGCACGCGCTGAGCAACTTCAGCTTTCAGCGCGGCGCCTCGCATCCGCAGGAACTGGTG CAGCGCGCGCACAAACTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MHWLAWHLPPIEATTGPATGSVIGLPPAAQGWWALRFTPRVALVDEALLLEVSGTERLWGGRAALQSLLRDHAPPGPETL EGGSLWASAPTALQALALLRLQRQGRPVPRRLPHDLPVATLSALRPHAQALQQLGCRTWGAVRALPRAGVARRFGAEPLA ALDRAWGDAPHGLDWITLPEQFALELELPALAESAPALLWAGQRLLDALQGWLRARHQGVQALELAWRHDLRRIDGVDLP PWQSLTLRTAEPLQGMAHLRRLLAERLAHQRLAAPVSRLALRSLQTAPMPQASADLLPPQPGDAGAGQGEPWHQFVERLS ARLGADSLRVPRSQADHRPECMQQWQPALAARAAPPAPAQDCTLAPLLPPWLVRPPRPLALRGSRPCLHGQPLRLLDGPQ RVETGWWEAAADLNDDESDVQVSAHNGAQDGGSALVRRDYFIAHNPAAGTVWVFRDRATGGWFLQGVYG
Sequences:
>Translated_469_residues MHWLAWHLPPIEATTGPATGSVIGLPPAAQGWWALRFTPRVALVDEALLLEVSGTERLWGGRAALQSLLRDHAPPGPETL EGGSLWASAPTALQALALLRLQRQGRPVPRRLPHDLPVATLSALRPHAQALQQLGCRTWGAVRALPRAGVARRFGAEPLA ALDRAWGDAPHGLDWITLPEQFALELELPALAESAPALLWAGQRLLDALQGWLRARHQGVQALELAWRHDLRRIDGVDLP PWQSLTLRTAEPLQGMAHLRRLLAERLAHQRLAAPVSRLALRSLQTAPMPQASADLLPPQPGDAGAGQGEPWHQFVERLS ARLGADSLRVPRSQADHRPECMQQWQPALAARAAPPAPAQDCTLAPLLPPWLVRPPRPLALRGSRPCLHGQPLRLLDGPQ RVETGWWEAAADLNDDESDVQVSAHNGAQDGGSALVRRDYFIAHNPAAGTVWVFRDRATGGWFLQGVYG >Mature_469_residues MHWLAWHLPPIEATTGPATGSVIGLPPAAQGWWALRFTPRVALVDEALLLEVSGTERLWGGRAALQSLLRDHAPPGPETL EGGSLWASAPTALQALALLRLQRQGRPVPRRLPHDLPVATLSALRPHAQALQQLGCRTWGAVRALPRAGVARRFGAEPLA ALDRAWGDAPHGLDWITLPEQFALELELPALAESAPALLWAGQRLLDALQGWLRARHQGVQALELAWRHDLRRIDGVDLP PWQSLTLRTAEPLQGMAHLRRLLAERLAHQRLAAPVSRLALRSLQTAPMPQASADLLPPQPGDAGAGQGEPWHQFVERLS ARLGADSLRVPRSQADHRPECMQQWQPALAARAAPPAPAQDCTLAPLLPPWLVRPPRPLALRGSRPCLHGQPLRLLDGPQ RVETGWWEAAADLNDDESDVQVSAHNGAQDGGSALVRRDYFIAHNPAAGTVWVFRDRATGGWFLQGVYG
Specific function: Unknown
COG id: COG0389
COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51108; Mature: 51108
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHWLAWHLPPIEATTGPATGSVIGLPPAAQGWWALRFTPRVALVDEALLLEVSGTERLWG CCCEEECCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCHHHHCCEEEEEECCCHHHCC GRAALQSLLRDHAPPGPETLEGGSLWASAPTALQALALLRLQRQGRPVPRRLPHDLPVAT CHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH LSALRPHAQALQQLGCRTWGAVRALPRAGVARRFGAEPLAALDRAWGDAPHGLDWITLPE HHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEECCH QFALELELPALAESAPALLWAGQRLLDALQGWLRARHQGVQALELAWRHDLRRIDGVDLP HHEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCC PWQSLTLRTAEPLQGMAHLRRLLAERLAHQRLAAPVSRLALRSLQTAPMPQASADLLPPQ CCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC PGDAGAGQGEPWHQFVERLSARLGADSLRVPRSQADHRPECMQQWQPALAARAAPPAPAQ CCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCC DCTLAPLLPPWLVRPPRPLALRGSRPCLHGQPLRLLDGPQRVETGWWEAAADLNDDESDV CCEECCCCCHHHCCCCCCCEECCCCCCCCCCCHHHCCCCHHHHCCHHHHHCCCCCCCCCE QVSAHNGAQDGGSALVRRDYFIAHNPAAGTVWVFRDRATGGWFLQGVYG EEEECCCCCCCCCHHHHHCEEEEECCCCCEEEEEEECCCCCEEEEECCC >Mature Secondary Structure MHWLAWHLPPIEATTGPATGSVIGLPPAAQGWWALRFTPRVALVDEALLLEVSGTERLWG CCCEEECCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCHHHHCCEEEEEECCCHHHCC GRAALQSLLRDHAPPGPETLEGGSLWASAPTALQALALLRLQRQGRPVPRRLPHDLPVAT CHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH LSALRPHAQALQQLGCRTWGAVRALPRAGVARRFGAEPLAALDRAWGDAPHGLDWITLPE HHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEECCH QFALELELPALAESAPALLWAGQRLLDALQGWLRARHQGVQALELAWRHDLRRIDGVDLP HHEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCC PWQSLTLRTAEPLQGMAHLRRLLAERLAHQRLAAPVSRLALRSLQTAPMPQASADLLPPQ CCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC PGDAGAGQGEPWHQFVERLSARLGADSLRVPRSQADHRPECMQQWQPALAARAAPPAPAQ CCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCC DCTLAPLLPPWLVRPPRPLALRGSRPCLHGQPLRLLDGPQRVETGWWEAAADLNDDESDV CCEECCCCCHHHCCCCCCCEECCCCCCCCCCCHHHCCCCHHHHCCHHHHHCCCCCCCCCE QVSAHNGAQDGGSALVRRDYFIAHNPAAGTVWVFRDRATGGWFLQGVYG EEEECCCCCCCCCHHHHHCEEEEECCCCCEEEEEEECCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA