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The map label for this gene is rlmH [H]

Identifier: 222110900

GI number: 222110900

Start: 1813510

End: 1813977

Strand: Direct

Name: rlmH [H]

Synonym: Dtpsy_1707

Alternate gene names: 222110900

Gene position: 1813510-1813977 (Clockwise)

Preceding gene: 222110899

Following gene: 222110901

Centisome position: 47.77

GC content: 66.67

Gene sequence:

>468_bases
ATGAAGCTGCTGATCGTGGCCGTGGGCCAGCGGGTTCCCGACTGGGCGCAGACGGCCTATGACGACTATGCCAAGCGATT
CCCGCCCGAGCTGAAGGTCGAGCTCAAGGCCGTCAAGACCGAGCCGCGCGGCTCCAAGACGCTGGAGACGCTCTATGCTG
CCGAGCGCGAGCGTATCGAAGCGGCCATCCCGCGTGGCACGCGTGTGGTGGTGCTGGACGAGCGGGGCACGAGTCTCACC
ACCAAGGCCCTGGCCCAGCGGCTGAAGGACTGGCAGCTCGGGGGGGATGATGTGGCCCTGGTGATCGGCGGTCCCGATGG
GCTGGAGCCTGCGTTTCGGCAGGCCGCGCATGAGCGCATCCGCCTGTCGGACCTGACGCTGCCGCATGCCATGGTGCGCG
TGTTGCTTATCGAGCAGCTCTACCGTGCTTGGTCGGTGAATGCCGGGCACCCGTACCATCGCGAATAA

Upstream 100 bases:

>100_bases
CGCTACCACCACGGCACGCAAGCCGGTCGCCAAATCCACCGGCAAGGCTGTTGCGAAGAAGGCCCCCGCACGCAAGAAGG
CCTAAGCCTTTCGCTGACCC

Downstream 100 bases:

>100_bases
CTTCAGATTTGATAGCTGCTCGCGCTTGCTGGTCGGGCGCTGGAGGCACATTTGACTCAAGAAAACCGCTTCATCTACCT
GGCCTCCCAGAGCCCGCGGC

Product: rRNA large subunit methyltransferase

Products: NA

Alternate protein names: 23S rRNA m3Psi1915 methyltransferase; rRNA (pseudouridine-N3-)-methyltransferase rlmH [H]

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MKLLIVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIPRGTRVVVLDERGTSLT
TKALAQRLKDWQLGGDDVALVIGGPDGLEPAFRQAAHERIRLSDLTLPHAMVRVLLIEQLYRAWSVNAGHPYHRE

Sequences:

>Translated_155_residues
MKLLIVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIPRGTRVVVLDERGTSLT
TKALAQRLKDWQLGGDDVALVIGGPDGLEPAFRQAAHERIRLSDLTLPHAMVRVLLIEQLYRAWSVNAGHPYHRE
>Mature_155_residues
MKLLIVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIEAAIPRGTRVVVLDERGTSLT
TKALAQRLKDWQLGGDDVALVIGGPDGLEPAFRQAAHERIRLSDLTLPHAMVRVLLIEQLYRAWSVNAGHPYHRE

Specific function: Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA [H]

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family [H]

Homologues:

Organism=Escherichia coli, GI1786855, Length=156, Percent_Identity=46.7948717948718, Blast_Score=140, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016051
- InterPro:   IPR003742 [H]

Pfam domain/function: PF02590 SPOUT_MTase [H]

EC number: NA

Molecular weight: Translated: 17434; Mature: 17434

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLIVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIE
CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
AAIPRGTRVVVLDERGTSLTTKALAQRLKDWQLGGDDVALVIGGPDGLEPAFRQAAHERI
HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
RLSDLTLPHAMVRVLLIEQLYRAWSVNAGHPYHRE
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKLLIVAVGQRVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTLETLYAAERERIE
CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
AAIPRGTRVVVLDERGTSLTTKALAQRLKDWQLGGDDVALVIGGPDGLEPAFRQAAHERI
HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
RLSDLTLPHAMVRVLLIEQLYRAWSVNAGHPYHRE
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA