| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is yhhT [H]
Identifier: 222110889
GI number: 222110889
Start: 1800744
End: 1803236
Strand: Direct
Name: yhhT [H]
Synonym: Dtpsy_1696
Alternate gene names: 222110889
Gene position: 1800744-1803236 (Clockwise)
Preceding gene: 222110884
Following gene: 222110893
Centisome position: 47.43
GC content: 71.8
Gene sequence:
>2493_bases ATGCAAGGGGACAACGCCATGGGCAACAGCGGGCCGCAGGAGCCGACCGATTCCAGGCCGGCCAGGGATACGGGGGCGGC GCGCGGCGCCACCGCTTCGGGCTATCCGCCGCAGCGCACCGTGCACACCGCCACGGCCTTGGACGCCACGGTGCCCAGCC TGCGGTTCATGATCGGCCTGGTGATCGCGGCGCTGGTGGTCGCGGGCCTGTATTTCGGCCGCACGCTGCTGGTGCCGCTG GCATTGGCGTTCCTGCTGAGCTTCGTGCTGGAGCCGCTGGTGGCGCAGCTCAAGCGCATGGGCCTGCCGCGCCTGCCCTC GGTCATCGCGGTGGTGATGGCAATGCTGATGGTGCTGGGCGTGGGGGCGCTGTTCGTGGGTAACGAGGCGCGCGAGCTGA GCGCGCAGCTGCCCTCCTACCAGAGCACCATCCGCAAGAAGCTGCGCAGCCTGCGTCAGGAGTTGCGCGCGCCCGGCATG TTCGACGGCGCCAAGCGCACCTTCGACATCGTGCAGCGCGAGGTGGAGGCGGCCGCTCCCGCCTTGTCGGGTGCCACGCG CGCGCCGGCCGTGCAAAAGGTGCAGGTGCAGCCGCCCGTGCTGTCGCCCGCCAACCAGCTCATGGCCGCGCTCTCGGCGG TCAGTGGGCCGCTCACCCAGGCGGGCCTGGTGCTGGTGTTCGTGATCTTCATCCTGCTGGACCGTGTAGACCTGCGCGAC CGCCTGCTGCGCCTGTGGGGGGGCAATCTGCACCGCGCCACCGATGCCATGGACGAGGCGGGCGACCGCATCACGCGCTA CCTGACCATGCAACTGCTGGTGAACGTGACCTACGGCATTCCCATGGCGGCGGGCCTGTGGCTCATCGGCGTGCCCGGTG CCGTGCTGTGGGGGTCGCTGGCCGCGGTGATGCGCTTCGTGCCCTACCTGGGGCCGTTCATCGCTGCGGCGTTTCCGCTC ACCCTCGCTTTCGCGGTGGACCCGGGCTGGGATCTGGTGCTGTGGACGCTCGGCCTCATCGTGCTGCTGGAACTGGTGAG CAACAACGTCATCGAGCCCTGGCTGTATGGGTCCAGCACCGGGCTGTCGGCGCTGTCGCTCATCGTGGCGGCCACCTTCT GGGCGGCGCTGTGGGGGCCGGTGGGGCTCATCATGTCCACGCCGCTCACCGTGTGCCTGCTGGTGATCGGCCGCTACCTG CCGCAGTTGGCCTTCCTGGAGGTGCTGCTGGGCAGCCGGCCGGTGCTGGACGAGCCCACGCGCATCTACCAGCGACTGCT GGCGGGCGACGCGGCGGAGGCCATCGAGCTGAGCACCACCCGCATCGAGGCCCTGAAGGGCGCCGTGCCCGCTTTCTACG GCCAGGTGGGCGTGCCCGTGCTGCGCATGGCCGTGGGTGACCATGCGCAGGTGGCCACGCCCGAGCACCGCCTGCGCCTG GTCGAAGGCATGGACGCGCTGCTGGACGAGTTGGAGGAGCAGTACCCGGTGCCCGACGCCGCTGCGCAAGAGCCGGTGGT GTGCCTGGGCGGCAAGTGGGAGGTAGACCTGTTCGCGGCGCGCATGCTGGCGCATGCGCTGTCGCTGCAGCATTGCCCGG CGCTGGCGCGCGTGGAGGGCGCCATGAGCGCCGAACATCTGGATGGCCTGGACCTGGACGCCGTGCGCGTGGTCTGCGTG GTGTGGCTCGCGCCCGAGCCCACCGCCGCCGCGCGGCACCTGTGCCGCAGGCTCAAGCGCCGCTGGCCGCATGTGCACAT CGTGCTGGCGCTGTGGGGTGGGGTGCAGTCCCAGCCGCAGGACGAGCTGAGTGCCCAACTGGGCGCCGACGCGCTGGCGC TGTCGCTGGAGGAAACCCTGGCCCAGGTGGCGCAGCTGCAGGGCGCCAGCGTGGAAGGCGCCTACACCCCCGCGCCCATT CCCGCGGACGACGAGGCGCGCCTGCGCGCCCTGCAGGCCAGCGGCGTGCTCGACAGCCCCGCGCTGCAGCAGTTGTGCCA GCACACGGCCCAGCGCGCGGCCGACATCTTCGACGTACCGTTGGCGATGGTGTCGCTGGTGGATCGCGAGCGGCAGGTCA CGCTGTGTGCGCACGGCCCGTTGGCGGCCGGCGGGGGGCAGGCCTGCTCGGCGGGTCAGGGCCTGCCGCGCGGCCTGTCG CTGTGCGGGCATGTGGTGGCGCGGCAGCGGTCGCTGGTGGTGCTCGACATTGCGCGGGATGCGCGCTTTGCCGGCAATCC GGCGCTGCGCGAGCAGGGTCTGCGCTTTTACGCGGGCGTTCCGCTGCGCGACGCGGCGGGCCATGCGCTGGGCACGCTGT GCCTGATGGACACCGCGCCGCGCGCGTTCGATGAGCGGGAAAAGCGGTTGCTGCAGGCCATGGCCAATGACCTCATGGCT GGCTGGCGCGACGCCCAGGCCGCGGGCGGCCCGGCGCTACCCGCGGGCCAGGCCGCGCCATCGGCCACGGTGGGTCAGGT GGTGCCGCAGTAG
Upstream 100 bases:
>100_bases TGTCAGTCGTCCGCCCGCGTGCATTCTGTGGCGGCTGCCGCCTACAGGGGCGCGGGGCCGCGCAGCAGACAATACGCGCC GGAAACGACTTCGAGAAGCG
Downstream 100 bases:
>100_bases CCGACGTTGTCCGAAATCGTCCGAAATGGTCTGAAGTAGGAGCGACCGGCGCGGCCAGGGTCGGGGCAGCGCCTGTCGCC AGCGCGTTACTTGGTGCCGA
Product: phytochrome sensor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 830; Mature: 830
Protein sequence:
>830_residues MQGDNAMGNSGPQEPTDSRPARDTGAARGATASGYPPQRTVHTATALDATVPSLRFMIGLVIAALVVAGLYFGRTLLVPL ALAFLLSFVLEPLVAQLKRMGLPRLPSVIAVVMAMLMVLGVGALFVGNEARELSAQLPSYQSTIRKKLRSLRQELRAPGM FDGAKRTFDIVQREVEAAAPALSGATRAPAVQKVQVQPPVLSPANQLMAALSAVSGPLTQAGLVLVFVIFILLDRVDLRD RLLRLWGGNLHRATDAMDEAGDRITRYLTMQLLVNVTYGIPMAAGLWLIGVPGAVLWGSLAAVMRFVPYLGPFIAAAFPL TLAFAVDPGWDLVLWTLGLIVLLELVSNNVIEPWLYGSSTGLSALSLIVAATFWAALWGPVGLIMSTPLTVCLLVIGRYL PQLAFLEVLLGSRPVLDEPTRIYQRLLAGDAAEAIELSTTRIEALKGAVPAFYGQVGVPVLRMAVGDHAQVATPEHRLRL VEGMDALLDELEEQYPVPDAAAQEPVVCLGGKWEVDLFAARMLAHALSLQHCPALARVEGAMSAEHLDGLDLDAVRVVCV VWLAPEPTAAARHLCRRLKRRWPHVHIVLALWGGVQSQPQDELSAQLGADALALSLEETLAQVAQLQGASVEGAYTPAPI PADDEARLRALQASGVLDSPALQQLCQHTAQRAADIFDVPLAMVSLVDRERQVTLCAHGPLAAGGGQACSAGQGLPRGLS LCGHVVARQRSLVVLDIARDARFAGNPALREQGLRFYAGVPLRDAAGHALGTLCLMDTAPRAFDEREKRLLQAMANDLMA GWRDAQAAGGPALPAGQAAPSATVGQVVPQ
Sequences:
>Translated_830_residues MQGDNAMGNSGPQEPTDSRPARDTGAARGATASGYPPQRTVHTATALDATVPSLRFMIGLVIAALVVAGLYFGRTLLVPL ALAFLLSFVLEPLVAQLKRMGLPRLPSVIAVVMAMLMVLGVGALFVGNEARELSAQLPSYQSTIRKKLRSLRQELRAPGM FDGAKRTFDIVQREVEAAAPALSGATRAPAVQKVQVQPPVLSPANQLMAALSAVSGPLTQAGLVLVFVIFILLDRVDLRD RLLRLWGGNLHRATDAMDEAGDRITRYLTMQLLVNVTYGIPMAAGLWLIGVPGAVLWGSLAAVMRFVPYLGPFIAAAFPL TLAFAVDPGWDLVLWTLGLIVLLELVSNNVIEPWLYGSSTGLSALSLIVAATFWAALWGPVGLIMSTPLTVCLLVIGRYL PQLAFLEVLLGSRPVLDEPTRIYQRLLAGDAAEAIELSTTRIEALKGAVPAFYGQVGVPVLRMAVGDHAQVATPEHRLRL VEGMDALLDELEEQYPVPDAAAQEPVVCLGGKWEVDLFAARMLAHALSLQHCPALARVEGAMSAEHLDGLDLDAVRVVCV VWLAPEPTAAARHLCRRLKRRWPHVHIVLALWGGVQSQPQDELSAQLGADALALSLEETLAQVAQLQGASVEGAYTPAPI PADDEARLRALQASGVLDSPALQQLCQHTAQRAADIFDVPLAMVSLVDRERQVTLCAHGPLAAGGGQACSAGQGLPRGLS LCGHVVARQRSLVVLDIARDARFAGNPALREQGLRFYAGVPLRDAAGHALGTLCLMDTAPRAFDEREKRLLQAMANDLMA GWRDAQAAGGPALPAGQAAPSATVGQVVPQ >Mature_830_residues MQGDNAMGNSGPQEPTDSRPARDTGAARGATASGYPPQRTVHTATALDATVPSLRFMIGLVIAALVVAGLYFGRTLLVPL ALAFLLSFVLEPLVAQLKRMGLPRLPSVIAVVMAMLMVLGVGALFVGNEARELSAQLPSYQSTIRKKLRSLRQELRAPGM FDGAKRTFDIVQREVEAAAPALSGATRAPAVQKVQVQPPVLSPANQLMAALSAVSGPLTQAGLVLVFVIFILLDRVDLRD RLLRLWGGNLHRATDAMDEAGDRITRYLTMQLLVNVTYGIPMAAGLWLIGVPGAVLWGSLAAVMRFVPYLGPFIAAAFPL TLAFAVDPGWDLVLWTLGLIVLLELVSNNVIEPWLYGSSTGLSALSLIVAATFWAALWGPVGLIMSTPLTVCLLVIGRYL PQLAFLEVLLGSRPVLDEPTRIYQRLLAGDAAEAIELSTTRIEALKGAVPAFYGQVGVPVLRMAVGDHAQVATPEHRLRL VEGMDALLDELEEQYPVPDAAAQEPVVCLGGKWEVDLFAARMLAHALSLQHCPALARVEGAMSAEHLDGLDLDAVRVVCV VWLAPEPTAAARHLCRRLKRRWPHVHIVLALWGGVQSQPQDELSAQLGADALALSLEETLAQVAQLQGASVEGAYTPAPI PADDEARLRALQASGVLDSPALQQLCQHTAQRAADIFDVPLAMVSLVDRERQVTLCAHGPLAAGGGQACSAGQGLPRGLS LCGHVVARQRSLVVLDIARDARFAGNPALREQGLRFYAGVPLRDAAGHALGTLCLMDTAPRAFDEREKRLLQAMANDLMA GWRDAQAAGGPALPAGQAAPSATVGQVVPQ
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI87082271, Length=346, Percent_Identity=26.3005780346821, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1787885, Length=137, Percent_Identity=31.3868613138686, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 88262; Mature: 88262
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00962 RIBOSOMAL_S2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGDNAMGNSGPQEPTDSRPARDTGAARGATASGYPPQRTVHTATALDATVPSLRFMIGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VIAALVVAGLYFGRTLLVPLALAFLLSFVLEPLVAQLKRMGLPRLPSVIAVVMAMLMVLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH VGALFVGNEARELSAQLPSYQSTIRKKLRSLRQELRAPGMFDGAKRTFDIVQREVEAAAP HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH ALSGATRAPAVQKVQVQPPVLSPANQLMAALSAVSGPLTQAGLVLVFVIFILLDRVDLRD HHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH RLLRLWGGNLHRATDAMDEAGDRITRYLTMQLLVNVTYGIPMAAGLWLIGVPGAVLWGSL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHCCCCHHHHHHHH AAVMRFVPYLGPFIAAAFPLTLAFAVDPGWDLVLWTLGLIVLLELVSNNVIEPWLYGSST HHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GLSALSLIVAATFWAALWGPVGLIMSTPLTVCLLVIGRYLPQLAFLEVLLGSRPVLDEPT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RIYQRLLAGDAAEAIELSTTRIEALKGAVPAFYGQVGVPVLRMAVGDHAQVATPEHRLRL HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHH VEGMDALLDELEEQYPVPDAAAQEPVVCLGGKWEVDLFAARMLAHALSLQHCPALARVEG HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH AMSAEHLDGLDLDAVRVVCVVWLAPEPTAAARHLCRRLKRRWPHVHIVLALWGGVQSQPQ HHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH DELSAQLGADALALSLEETLAQVAQLQGASVEGAYTPAPIPADDEARLRALQASGVLDSP HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCH ALQQLCQHTAQRAADIFDVPLAMVSLVDRERQVTLCAHGPLAAGGGQACSAGQGLPRGLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH LCGHVVARQRSLVVLDIARDARFAGNPALREQGLRFYAGVPLRDAAGHALGTLCLMDTAP HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCEECCCCCHHHCCHHHHHHHHHHCCC RAFDEREKRLLQAMANDLMAGWRDAQAAGGPALPAGQAAPSATVGQVVPQ HHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHCCCC >Mature Secondary Structure MQGDNAMGNSGPQEPTDSRPARDTGAARGATASGYPPQRTVHTATALDATVPSLRFMIGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VIAALVVAGLYFGRTLLVPLALAFLLSFVLEPLVAQLKRMGLPRLPSVIAVVMAMLMVLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH VGALFVGNEARELSAQLPSYQSTIRKKLRSLRQELRAPGMFDGAKRTFDIVQREVEAAAP HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH ALSGATRAPAVQKVQVQPPVLSPANQLMAALSAVSGPLTQAGLVLVFVIFILLDRVDLRD HHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH RLLRLWGGNLHRATDAMDEAGDRITRYLTMQLLVNVTYGIPMAAGLWLIGVPGAVLWGSL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHCCCCHHHHHHHH AAVMRFVPYLGPFIAAAFPLTLAFAVDPGWDLVLWTLGLIVLLELVSNNVIEPWLYGSST HHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GLSALSLIVAATFWAALWGPVGLIMSTPLTVCLLVIGRYLPQLAFLEVLLGSRPVLDEPT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RIYQRLLAGDAAEAIELSTTRIEALKGAVPAFYGQVGVPVLRMAVGDHAQVATPEHRLRL HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHH VEGMDALLDELEEQYPVPDAAAQEPVVCLGGKWEVDLFAARMLAHALSLQHCPALARVEG HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH AMSAEHLDGLDLDAVRVVCVVWLAPEPTAAARHLCRRLKRRWPHVHIVLALWGGVQSQPQ HHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH DELSAQLGADALALSLEETLAQVAQLQGASVEGAYTPAPIPADDEARLRALQASGVLDSP HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCH ALQQLCQHTAQRAADIFDVPLAMVSLVDRERQVTLCAHGPLAAGGGQACSAGQGLPRGLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH LCGHVVARQRSLVVLDIARDARFAGNPALREQGLRFYAGVPLRDAAGHALGTLCLMDTAP HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCEECCCCCHHHCCHHHHHHHHHHCCC RAFDEREKRLLQAMANDLMAGWRDAQAAGGPALPAGQAAPSATVGQVVPQ HHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]