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The map label for this gene is nifU [H]

Identifier: 222110833

GI number: 222110833

Start: 1731595

End: 1731996

Strand: Direct

Name: nifU [H]

Synonym: Dtpsy_1639

Alternate gene names: 222110833

Gene position: 1731595-1731996 (Clockwise)

Preceding gene: 222110832

Following gene: 222110834

Centisome position: 45.61

GC content: 61.69

Gene sequence:

>402_bases
ATGGCTTACTCGGACAAAGTGATTGACCATTACGAGAACCCCCGCAATGTGGGTTCCTTCGACAAGGGTGACGACTCGGT
GGGCACCGGCATGGTCGGTGCGCCGGCTTGCGGCGACGTGATGAAGCTGCAGATCAAGGTGAACCCCGATACGGGCGTGA
TTGAGGATGCGCGCTTCAAGACCTACGGCTGCGGCTCCGCCATTGCGTCCTCGTCGCTGGTGACGGAATGGGTCAAGGGC
AAGACGCTGGATGAGGCTGCCTCGCTCAAGAACAGCCAGATTGCCGAAGAGCTGGCGCTGCCGCCGGTGAAGATCCACTG
CTCCATCCTGGCGGAAGACGCCATCAAGGCCGCGGTCAACGATTACAAGGCCAAGCACGGAGCGGCTGTCGAGGCCGCCT
GA

Upstream 100 bases:

>100_bases
CCCCTCTGGGAGATGTACCAGGATGGGGTGGACCTGAGCACCATCCAATGGGCGGCTCACTGACCACACGCGGCACGACG
GAATACAGGAGAAACACACC

Downstream 100 bases:

>100_bases
AGACCATGGCGATCACGCTGACCGAAGCTGCCGCGCGCCATGTGACGCGCTACCTCGCCCGGCGGGGAAAGGGCGTGGGC
GTGCGCCTAGGTGTCAAGAC

Product: fes cluster assembly scaffold iscu

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MAYSDKVIDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNPDTGVIEDARFKTYGCGSAIASSSLVTEWVKG
KTLDEAASLKNSQIAEELALPPVKIHCSILAEDAIKAAVNDYKAKHGAAVEAA

Sequences:

>Translated_133_residues
MAYSDKVIDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNPDTGVIEDARFKTYGCGSAIASSSLVTEWVKG
KTLDEAASLKNSQIAEELALPPVKIHCSILAEDAIKAAVNDYKAKHGAAVEAA
>Mature_132_residues
AYSDKVIDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNPDTGVIEDARFKTYGCGSAIASSSLVTEWVKGK
TLDEAASLKNSQIAEELALPPVKIHCSILAEDAIKAAVNDYKAKHGAAVEAA

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=124, Percent_Identity=73.3870967741936, Blast_Score=194, Evalue=3e-50,
Organism=Homo sapiens, GI24307953, Length=124, Percent_Identity=72.5806451612903, Blast_Score=190, Evalue=3e-49,
Organism=Escherichia coli, GI1788878, Length=128, Percent_Identity=83.59375, Blast_Score=223, Evalue=4e-60,
Organism=Caenorhabditis elegans, GI17543474, Length=124, Percent_Identity=70.9677419354839, Blast_Score=190, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=71.7741935483871, Blast_Score=194, Evalue=5e-51,
Organism=Saccharomyces cerevisiae, GI6324800, Length=128, Percent_Identity=67.96875, Blast_Score=189, Evalue=8e-50,
Organism=Drosophila melanogaster, GI21355597, Length=128, Percent_Identity=71.875, Blast_Score=194, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13969; Mature: 13838

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSDKVIDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNPDTGVIEDARFK
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
TYGCGSAIASSSLVTEWVKGKTLDEAASLKNSQIAEELALPPVKIHCSILAEDAIKAAVN
CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
DYKAKHGAAVEAA
HHHHCCCCEECCC
>Mature Secondary Structure 
AYSDKVIDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNPDTGVIEDARFK
CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
TYGCGSAIASSSLVTEWVKGKTLDEAASLKNSQIAEELALPPVKIHCSILAEDAIKAAVN
CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
DYKAKHGAAVEAA
HHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]