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The map label for this gene is traD [H]

Identifier: 222110763

GI number: 222110763

Start: 1651847

End: 1653562

Strand: Direct

Name: traD [H]

Synonym: Dtpsy_1567

Alternate gene names: 222110763

Gene position: 1651847-1653562 (Clockwise)

Preceding gene: 222110762

Following gene: 222110764

Centisome position: 43.51

GC content: 53.96

Gene sequence:

>1716_bases
ATGACCAATATCCTGTTGTATTCCATTACTGCAATCCTGGCTGCTGCCGCATTTTGGGTGCTGCGCGGGCGAGAAAATCG
CGTATTGATGTACCTACGCCACTTCGCCGCCGCGCTGGCCGTGGCTTCGGTTGTCATTGCCTTTGAGGGCAAAGAGGCAT
ATAGCATCGGCAAACTGCTGCTTGCCGCAGCTGTCGGCCTTGGGCTATTTTTCTATGCGCCCATCAATATTTTTAATAAG
TTTCGTGGCGGCCTCGGAAAAATCGGCATCAGCTTTGGCGAGACTTCGGGTAGCGCAGGGGGCGAATACATTCGCGGGGC
GAAACTCGTGAACGGCCAGCAGCTGCAAAAGATTCTCAAAAAAGAATCCGGTTCCCTCACCGTGGGCGGCCAGAAAATCC
CTGAGCGATTGGAAGCCCGCCATTTCATGCTGGCGGGTTCAACTGGTGTCGGTAAGTCTGTGGCAATCTCCGAAATGCTG
GATGGTATTGCGGCGCGTGGCGACCGGGTTTTTATTGCCGACGCGGGCGGAAACTTCCTCAAAAATTATTACGACGAAGA
ACGCGGCGACATTATCCTGAATCCGCTGGATTCACGCGCCGTCAGTTGGTCACCGCTGGCAGAAATGGAAGGCCCTTGGG
ATGCCGACCTGATTGCAAAATCCATCGTTCCCGATGGCGATGGCGGCTCCAAGGAATGGAATCAATATGCCCAGGTCATC
ACGAGCGCGGTTCTCAAACACTGCTGGCAAAACGATCTGACGAACTTCGATATTTTTCGACTGGCAATCATTGCCAATAT
CGAGGAATTGCGGATGGTATTTGAGGGCACCCCGGCGCAGCCGCTGGTGGCCGAAGGCAATGAAAAGATGTTCGGCAGCA
TTCGCGGCATCGTCGGCACCTACATTTCACCCTTCCAATACCTCGACCCCGCAGCAGGCGCGAACAATGGATTCTCCCTC
AAATCAATTGTTGAAGACAACGGCGCCAAGAACTGGCTATTTTTCAACTACCCCGACAAACAAATCAGCACCGTCGCCCC
AATCATCGCGGCGATGACCGATATTGTCAGCAAGTCGATTCTCTCGCTGGAGGCGGACAACAACCGCAAATTCTGGCTGA
TCATTGACGAATTCGCCAGCGTTGGCCGGATTTCTTCGATTCTCGATTTTCTGACGAAGGCCCGTAAAAACGGAGGCCGT
GCGATTATTGGCGTGCAGACGATTTCCCAGCTCAAGAGCGCCTATGGCGTCAATGACGCATCGACGCTAATGTCTTGCTT
GTCTTCTCAGATTGTTTTCCGGGTTCCCGATCCAGACACGGCGGATATTATGTCTCGCCTCCTGGGCGACCAGCAAATCA
GCCGCGTTATTCAAAGCGGCGGTGAATCGTCGCAGAGCATGCAAATTGGCGGCAGCAAATCCGAGAACTGGAGCCAGCAA
ATCACGACAGATCGAATCGTGATGACCGGCGAGATTATGAACTTCCCCGATCTCTACGGCATTCTGAATTTCGCGGGCGA
CATTCCAGCGGCGCCGATTGAAGTCGAATGGATGGAGCGCCATAAAGTCGCCGAGCACTTCCAGGCCACGACCCGCAAGG
AAATCAAGATCGCGGCACCAGCAAAACCCGCAGAGATTCAAAAGCCGACAGAGACAGAGAATACCGCCGTCAGCGATTCA
GATTTGCCCGGCGTCGAATCCGACGACGTGATCTGA

Upstream 100 bases:

>100_bases
TCAAGAAGGACTATTTCAATTCAAGTTGGCCGCAGCGCTGGGGGCATTGATAGGCGGACTCCCTCCGATTCTTTTCATTT
TCAAGAAGTGAGATTTTCAA

Downstream 100 bases:

>100_bases
TTATCCTTTTCACCCCTCGCCCAGCCTTTGCGCTGGGCTTTTCTTTTGGACTTCCCAGGCAGTCCGTGGAGAAGCAAGAA
ACTCAGTATCAAGGTATGCA

Product: type IV secretory pathway vird4 component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 570

Protein sequence:

>571_residues
MTNILLYSITAILAAAAFWVLRGRENRVLMYLRHFAAALAVASVVIAFEGKEAYSIGKLLLAAAVGLGLFFYAPINIFNK
FRGGLGKIGISFGETSGSAGGEYIRGAKLVNGQQLQKILKKESGSLTVGGQKIPERLEARHFMLAGSTGVGKSVAISEML
DGIAARGDRVFIADAGGNFLKNYYDEERGDIILNPLDSRAVSWSPLAEMEGPWDADLIAKSIVPDGDGGSKEWNQYAQVI
TSAVLKHCWQNDLTNFDIFRLAIIANIEELRMVFEGTPAQPLVAEGNEKMFGSIRGIVGTYISPFQYLDPAAGANNGFSL
KSIVEDNGAKNWLFFNYPDKQISTVAPIIAAMTDIVSKSILSLEADNNRKFWLIIDEFASVGRISSILDFLTKARKNGGR
AIIGVQTISQLKSAYGVNDASTLMSCLSSQIVFRVPDPDTADIMSRLLGDQQISRVIQSGGESSQSMQIGGSKSENWSQQ
ITTDRIVMTGEIMNFPDLYGILNFAGDIPAAPIEVEWMERHKVAEHFQATTRKEIKIAAPAKPAEIQKPTETENTAVSDS
DLPGVESDDVI

Sequences:

>Translated_571_residues
MTNILLYSITAILAAAAFWVLRGRENRVLMYLRHFAAALAVASVVIAFEGKEAYSIGKLLLAAAVGLGLFFYAPINIFNK
FRGGLGKIGISFGETSGSAGGEYIRGAKLVNGQQLQKILKKESGSLTVGGQKIPERLEARHFMLAGSTGVGKSVAISEML
DGIAARGDRVFIADAGGNFLKNYYDEERGDIILNPLDSRAVSWSPLAEMEGPWDADLIAKSIVPDGDGGSKEWNQYAQVI
TSAVLKHCWQNDLTNFDIFRLAIIANIEELRMVFEGTPAQPLVAEGNEKMFGSIRGIVGTYISPFQYLDPAAGANNGFSL
KSIVEDNGAKNWLFFNYPDKQISTVAPIIAAMTDIVSKSILSLEADNNRKFWLIIDEFASVGRISSILDFLTKARKNGGR
AIIGVQTISQLKSAYGVNDASTLMSCLSSQIVFRVPDPDTADIMSRLLGDQQISRVIQSGGESSQSMQIGGSKSENWSQQ
ITTDRIVMTGEIMNFPDLYGILNFAGDIPAAPIEVEWMERHKVAEHFQATTRKEIKIAAPAKPAEIQKPTETENTAVSDS
DLPGVESDDVI
>Mature_570_residues
TNILLYSITAILAAAAFWVLRGRENRVLMYLRHFAAALAVASVVIAFEGKEAYSIGKLLLAAAVGLGLFFYAPINIFNKF
RGGLGKIGISFGETSGSAGGEYIRGAKLVNGQQLQKILKKESGSLTVGGQKIPERLEARHFMLAGSTGVGKSVAISEMLD
GIAARGDRVFIADAGGNFLKNYYDEERGDIILNPLDSRAVSWSPLAEMEGPWDADLIAKSIVPDGDGGSKEWNQYAQVIT
SAVLKHCWQNDLTNFDIFRLAIIANIEELRMVFEGTPAQPLVAEGNEKMFGSIRGIVGTYISPFQYLDPAAGANNGFSLK
SIVEDNGAKNWLFFNYPDKQISTVAPIIAAMTDIVSKSILSLEADNNRKFWLIIDEFASVGRISSILDFLTKARKNGGRA
IIGVQTISQLKSAYGVNDASTLMSCLSSQIVFRVPDPDTADIMSRLLGDQQISRVIQSGGESSQSMQIGGSKSENWSQQI
TTDRIVMTGEIMNFPDLYGILNFAGDIPAAPIEVEWMERHKVAEHFQATTRKEIKIAAPAKPAEIQKPTETENTAVSDSD
LPGVESDDVI

Specific function: TraD is a cell envelope protein. The function of traD is unknown but it is essential for DNA transfer. It may form or may be part of a non-specific pore for DNA export, or it may directly energizes DNA transport [H]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To traD of plasmid F [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014128
- InterPro:   IPR019476
- InterPro:   IPR022585 [H]

Pfam domain/function: PF12615 TraD_N; PF10412 TrwB_AAD_bind [H]

EC number: NA

Molecular weight: Translated: 61967; Mature: 61836

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNILLYSITAILAAAAFWVLRGRENRVLMYLRHFAAALAVASVVIAFEGKEAYSIGKLL
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHH
LAAAVGLGLFFYAPINIFNKFRGGLGKIGISFGETSGSAGGEYIRGAKLVNGQQLQKILK
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCHHHHHHHHH
KESGSLTVGGQKIPERLEARHFMLAGSTGVGKSVAISEMLDGIAARGDRVFIADAGGNFL
HCCCCEEECCHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHH
KNYYDEERGDIILNPLDSRAVSWSPLAEMEGPWDADLIAKSIVPDGDGGSKEWNQYAQVI
HHHHHCCCCCEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
TSAVLKHCWQNDLTNFDIFRLAIIANIEELRMVFEGTPAQPLVAEGNEKMFGSIRGIVGT
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHH
YISPFQYLDPAAGANNGFSLKSIVEDNGAKNWLFFNYPDKQISTVAPIIAAMTDIVSKSI
HCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
LSLEADNNRKFWLIIDEFASVGRISSILDFLTKARKNGGRAIIGVQTISQLKSAYGVNDA
HEEECCCCCEEEEEEHHHHCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCHH
STLMSCLSSQIVFRVPDPDTADIMSRLLGDQQISRVIQSGGESSQSMQIGGSKSENWSQQ
HHHHHHHCCCEEEECCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCCCCCCHHHH
ITTDRIVMTGEIMNFPDLYGILNFAGDIPAAPIEVEWMERHKVAEHFQATTRKEIKIAAP
CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCEEEECC
AKPAEIQKPTETENTAVSDSDLPGVESDDVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TNILLYSITAILAAAAFWVLRGRENRVLMYLRHFAAALAVASVVIAFEGKEAYSIGKLL
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHH
LAAAVGLGLFFYAPINIFNKFRGGLGKIGISFGETSGSAGGEYIRGAKLVNGQQLQKILK
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCHHHHHHHHH
KESGSLTVGGQKIPERLEARHFMLAGSTGVGKSVAISEMLDGIAARGDRVFIADAGGNFL
HCCCCEEECCHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHH
KNYYDEERGDIILNPLDSRAVSWSPLAEMEGPWDADLIAKSIVPDGDGGSKEWNQYAQVI
HHHHHCCCCCEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
TSAVLKHCWQNDLTNFDIFRLAIIANIEELRMVFEGTPAQPLVAEGNEKMFGSIRGIVGT
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHH
YISPFQYLDPAAGANNGFSLKSIVEDNGAKNWLFFNYPDKQISTVAPIIAAMTDIVSKSI
HCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
LSLEADNNRKFWLIIDEFASVGRISSILDFLTKARKNGGRAIIGVQTISQLKSAYGVNDA
HEEECCCCCEEEEEEHHHHCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCHH
STLMSCLSSQIVFRVPDPDTADIMSRLLGDQQISRVIQSGGESSQSMQIGGSKSENWSQQ
HHHHHHHCCCEEEECCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCCCCCCHHHH
ITTDRIVMTGEIMNFPDLYGILNFAGDIPAAPIEVEWMERHKVAEHFQATTRKEIKIAAP
CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCEEEECC
AKPAEIQKPTETENTAVSDSDLPGVESDDVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2164585 [H]