BacMap

Definition	Acidovorax ebreus TPSY chromosome, complete genome.
Accession	NC_011992
Length	3,796,573

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The map label for this gene is afuC [C]

Identifier: 222110735

GI number: 222110735

Start: 1621268

End: 1622050

Strand: Direct

Name: afuC [C]

Synonym: Dtpsy_1538

Alternate gene names: 222110735

Gene position: 1621268-1622050 (Clockwise)

Preceding gene: 222110733

Following gene: 222110736

Centisome position: 42.7

GC content: 70.37

Gene sequence:

>783_bases
ATGCCCCCCTCCTGTTCCTCTCACCCCCTTAGCGCTCCCGTGCTGCAAGTGCGGCAGGTGCGCCTGCGCCGCGGTGTCAC
GCAGGTCTTTGACGGGCTTGATCTCACGCTGGCCGAGCCGCGCATTGGACTGATCGGCCACAACGGCGCAGGCAAGACCA
GCCTGCTGCGGCTGTTGTGCGCGCTGGAGGTGCCCGACGACGGCCAGGTGCTGTCGCACGGGCAGGATTTGCAGGCACTG
CCGCAAGGGCAATTGCGGGCCCAGCGCGTGGGCATGATGTTCCAGAACCCCGACGATCAAATCATCTTTCCCACGGTGGA
AGAGGAGCTCGCCCTGGGCCTGCAACCGCAGGGCCTGTCCCGGCGTGATGCGCTGGCGCGCGCCCGCGCCTTCCTGGCCG
AACGGGGCCTTGCCGACTGGGCCGCGCGCGCGGTCGGGGCGTTGAGCCAGGGCCAGCGCCAGCACGTTTGTTGGCTCGCA
TTGCTGCTCGCCGGGCCGCGAACGCTGTTGCTGGACGAACCCTTCGCCAGCCTGGACCTGCCGGGGCAGGCACGGCTGGC
CGATGACATTGCCGCCTGCGGGCGGCAGGTGGTGGTGTCCACCCATGTGCTGGAGCATGTGCGCGACTACCCGCGCGTGG
TCTGGCTGCATGAAGGCCGGGTGCAGGCGGACGGCCGCGGCCACGATGTGTGCGCGGCGTATGAAGCCGCCGTTGCCCAA
CAGGTGGCGCGGGCCCGCGCCGCGGCGGGCATGCCACATGCCCATATGCGCGCCGCGGCCTGA

Upstream 100 bases:

>100_bases
GCTTATTGTCGGAAATTGATTGGCGATAGATGCTTTTTGCTGAAAGAAAAGGATTTTTAAGGGGCGTAGAATCCGCGGCG
AATTTGCTTGGCTTTTTGGC

Downstream 100 bases:

>100_bases
GCGAAGGATGCACCGCCATGGGTAGCCTCTACAGCGAACACCTCACCTGGCTGCACCGCTGGCCCGCGGGGTGCAAGCTG
GCCGGCATGGCGGTGCTGGG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPPSCSSHPLSAPVLQVRQVRLRRGVTQVFDGLDLTLAEPRIGLIGHNGAGKTSLLRLLCALEVPDDGQVLSHGQDLQAL
PQGQLRAQRVGMMFQNPDDQIIFPTVEEELALGLQPQGLSRRDALARARAFLAERGLADWAARAVGALSQGQRQHVCWLA
LLLAGPRTLLLDEPFASLDLPGQARLADDIAACGRQVVVSTHVLEHVRDYPRVVWLHEGRVQADGRGHDVCAAYEAAVAQ
QVARARAAAGMPHAHMRAAA

Sequences:

>Translated_260_residues
MPPSCSSHPLSAPVLQVRQVRLRRGVTQVFDGLDLTLAEPRIGLIGHNGAGKTSLLRLLCALEVPDDGQVLSHGQDLQAL
PQGQLRAQRVGMMFQNPDDQIIFPTVEEELALGLQPQGLSRRDALARARAFLAERGLADWAARAVGALSQGQRQHVCWLA
LLLAGPRTLLLDEPFASLDLPGQARLADDIAACGRQVVVSTHVLEHVRDYPRVVWLHEGRVQADGRGHDVCAAYEAAVAQ
QVARARAAAGMPHAHMRAAA
>Mature_259_residues
PPSCSSHPLSAPVLQVRQVRLRRGVTQVFDGLDLTLAEPRIGLIGHNGAGKTSLLRLLCALEVPDDGQVLSHGQDLQALP
QGQLRAQRVGMMFQNPDDQIIFPTVEEELALGLQPQGLSRRDALARARAFLAERGLADWAARAVGALSQGQRQHVCWLAL
LLAGPRTLLLDEPFASLDLPGQARLADDIAACGRQVVVSTHVLEHVRDYPRVVWLHEGRVQADGRGHDVCAAYEAAVAQQ
VARARAAAGMPHAHMRAAA

Specific function: Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system [H]

COG id: COG1122

COG function: function code P; ABC-type cobalt transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI153792144, Length=169, Percent_Identity=27.2189349112426, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI4557481, Length=216, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI255708477, Length=235, Percent_Identity=25.531914893617, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI116734710, Length=179, Percent_Identity=32.9608938547486, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4505771, Length=224, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI9961252, Length=224, Percent_Identity=29.0178571428571, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI42741659, Length=249, Percent_Identity=27.3092369477912, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI105990541, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI6005701, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI148612844, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI156105685, Length=207, Percent_Identity=31.8840579710145, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI9961250, Length=211, Percent_Identity=27.9620853080569, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI27436953, Length=163, Percent_Identity=27.6073619631902, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI87081709, Length=195, Percent_Identity=30.2564102564103, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI87081791, Length=207, Percent_Identity=32.3671497584541, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787370, Length=220, Percent_Identity=29.0909090909091, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787029, Length=223, Percent_Identity=30.4932735426009, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789873, Length=195, Percent_Identity=34.3589743589744, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788225, Length=213, Percent_Identity=33.8028169014084, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=34.6153846153846, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789962, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1786398, Length=176, Percent_Identity=32.9545454545455, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788644, Length=237, Percent_Identity=30.379746835443, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=29.9065420560748, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789032, Length=218, Percent_Identity=29.3577981651376, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788761, Length=174, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787792, Length=234, Percent_Identity=26.4957264957265, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=29.4605809128631, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786253, Length=207, Percent_Identity=30.9178743961353, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081782, Length=223, Percent_Identity=27.3542600896861, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786345, Length=184, Percent_Identity=32.6086956521739, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786563, Length=198, Percent_Identity=31.3131313131313, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI48994943, Length=236, Percent_Identity=25.8474576271186, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787547, Length=230, Percent_Identity=26.5217391304348, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787712, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790162, Length=223, Percent_Identity=28.6995515695067, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790467, Length=220, Percent_Identity=28.1818181818182, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=30.4761904761905, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790739, Length=231, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787164, Length=203, Percent_Identity=32.512315270936, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786872, Length=190, Percent_Identity=32.1052631578947, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=27.6699029126214, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=185, Percent_Identity=27.027027027027, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=26.2222222222222, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789586, Length=212, Percent_Identity=27.3584905660377, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789891, Length=207, Percent_Identity=32.3671497584541, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI2367384, Length=174, Percent_Identity=31.6091954022989, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787500, Length=204, Percent_Identity=25.9803921568627, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1789864, Length=198, Percent_Identity=28.7878787878788, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=220, Percent_Identity=30, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI115533608, Length=184, Percent_Identity=29.8913043478261, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI212646699, Length=189, Percent_Identity=30.6878306878307, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=213, Percent_Identity=29.5774647887324, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=224, Percent_Identity=27.2321428571429, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=212, Percent_Identity=29.7169811320755, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=229, Percent_Identity=24.4541484716157, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=211, Percent_Identity=28.436018957346, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=254, Percent_Identity=27.5590551181102, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=211, Percent_Identity=27.0142180094787, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=215, Percent_Identity=27.4418604651163, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=215, Percent_Identity=27.4418604651163, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=215, Percent_Identity=27.4418604651163, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17543740, Length=214, Percent_Identity=23.3644859813084, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=223, Percent_Identity=27.8026905829596, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI17136662, Length=233, Percent_Identity=27.8969957081545, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24648314, Length=196, Percent_Identity=25.5102040816327, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641565, Length=198, Percent_Identity=30.8080808080808, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85726357, Length=192, Percent_Identity=28.6458333333333, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24643674, Length=196, Percent_Identity=26.0204081632653, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24659289, Length=208, Percent_Identity=29.3269230769231, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI281363262, Length=209, Percent_Identity=28.2296650717703, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24653245, Length=194, Percent_Identity=28.8659793814433, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552363, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552361, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552359, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552337, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552355, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552357, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552353, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552351, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552349, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552345, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552347, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552343, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552341, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552339, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552335, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45550972, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24583969, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 28049; Mature: 27917

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPSCSSHPLSAPVLQVRQVRLRRGVTQVFDGLDLTLAEPRIGLIGHNGAGKTSLLRLLC
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCHHHHHHHHH
ALEVPDDGQVLSHGQDLQALPQGQLRAQRVGMMFQNPDDQIIFPTVEEELALGLQPQGLS
HHCCCCCCCHHHCCCCCHHCCCHHHHHHHHHHHEECCCCCEEECCCHHHHHCCCCCCCCC
RRDALARARAFLAERGLADWAARAVGALSQGQRQHVCWLALLLAGPRTLLLDEPFASLDL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCHHHCCC
PGQARLADDIAACGRQVVVSTHVLEHVRDYPRVVWLHEGRVQADGRGHDVCAAYEAAVAQ
CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEEECCCCCCHHHHHHHHHHHH
QVARARAAAGMPHAHMRAAA
HHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure 
PPSCSSHPLSAPVLQVRQVRLRRGVTQVFDGLDLTLAEPRIGLIGHNGAGKTSLLRLLC
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCHHHHHHHHH
ALEVPDDGQVLSHGQDLQALPQGQLRAQRVGMMFQNPDDQIIFPTVEEELALGLQPQGLS
HHCCCCCCCHHHCCCCCHHCCCHHHHHHHHHHHEECCCCCEEECCCHHHHHCCCCCCCCC
RRDALARARAFLAERGLADWAARAVGALSQGQRQHVCWLALLLAGPRTLLLDEPFASLDL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCHHHCCC
PGQARLADDIAACGRQVVVSTHVLEHVRDYPRVVWLHEGRVQADGRGHDVCAAYEAAVAQ
CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEEECCCCCCHHHHHHHHHHHH
QVARARAAAGMPHAHMRAAA
HHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]