| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is ytfP [H]
Identifier: 222110702
GI number: 222110702
Start: 1585978
End: 1587321
Strand: Direct
Name: ytfP [H]
Synonym: Dtpsy_1505
Alternate gene names: 222110702
Gene position: 1585978-1587321 (Clockwise)
Preceding gene: 222110701
Following gene: 222110704
Centisome position: 41.77
GC content: 70.24
Gene sequence:
>1344_bases ATGATGGATACGGATCTGCGATCTTGCGAGATCGCCGTGATTGGCGCGGGGCCGGCTGGCCTGATGGCCGCCGAGGCCGC AGCAGCGGCGGGCCTGAGCGTGCAGGTGTTCGACGCCATGCCTTCGGTGGGACGCAAGTTCCTGCTGGCGGGCAGGGGCG GGCTGAACCTCACGCATTCCGAACCGCTGGCGGCCTTCATGGCGCGCTATGGCGATCGCCAGCAGGCGCTGACGCCCTGG CTGCGAGACTTTGGCCCCGAGGACTTGCGCGCGTGGGCTGATGCCTTGGGCACGCAGACCTTCGTCGGTACGTCGGGCCG GGTGTTCCCCAAGGACATGAAAGCCGCGCCGCTTCTGCGTGCCTGGCTGCAGCGCTTGCGCGGGCAGGGGGTGCAGCTGC ACATGCGCCATCGCTGGATGGGCTGGGCCGACGCATTGAATGGCATCACGCCGCCTGTGCTGCGCTTTGCCGCGCCGGCG GGAGAGGTGCGGGTAAGGGCGCGCGCCGTCGTGCTGGCCCTGGGCGGCGGCAGCTGGGGCCGCCTGGGCTCGGACGGTAC CTGGGCGCCGCTGCTGGCGCAGCGCGGCGTGCCTGTAGCGCCGCTGGCGCCGTCCAACTGCGGTTTCGACGTACCGCGCG TGGATGCGCCCGTGGGCGAGACGCGGCGAGAGTTCTTTCTGGAGCTCATCGGCCGAGGCGCGCCCGCCGTCGGCTGGACG CCGCATTTCGTCGAGCGCTTCGCGGGCCAGCCCTTCAAGTCGGTGGTGCTGTCCTTCACCGACAGCCAGGGCCGGCGCTT TGAGCGGCGCGGGGAATTCGTGGCCACGGCCACGGGCGTGGAAGGCAGCCTGGTCTATGCGGTCTCCAGCCTGCTGCGCG ACGAGATCGTGGCACACGGTCACGCCACCTTCCACCTGGACTTGCTGCCCGACCACACGCCCGAGCGCGTGCTGGCCGAG GTGCGCCACCCGCGCGGCTCGCGCAGCCTTTCCACCCACCTCAAGAGCCGGCTGGGCCTGGACGGCATCAAAACCGCCGT CCTCTACGAACAACTGGGCAAGGACGGTATGTCCGACCCGGTGGCGCTGGCCCATGCCATCAAGGCCTTGCCCATCACCG TGGTGGCAGCACGCCCATTGGATGAGGCCATCAGCACGGCCGGCGGCGTGGCCTTCGAAGCGCTGGATACGCGCCTCATG CTGCGCACCATGCCCGGGGTTTTCTGCGCGGGCGAGATGCTGGACTGGGAGGCGCCCACCGGGGGGTATCTGTTGACTGC GTGCTATGCCACCGGGCGTGCGGCAGGAGCGGGTGCCGCGCACTGGCTGGCAACGCAGGCGTAG
Upstream 100 bases:
>100_bases GCGGCGGCCTTCGCGCCGCATTGCACGATGGAGGGAGCGCACTTCGTGCGGCCCATGCACGTGCGCCTGCTGCGGCGTGT GGGTTGATGAAAGCAACACC
Downstream 100 bases:
>100_bases CACAGCAGGGGCGCCGCCTTGGGCCATGCTCTGCGGTCATTGCGGGAAGGTCGGCGTCAACCCAGAGCGTTGCTGAGCGC GCGGTCAAAACTTCGCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 447; Mature: 447
Protein sequence:
>447_residues MMDTDLRSCEIAVIGAGPAGLMAAEAAAAAGLSVQVFDAMPSVGRKFLLAGRGGLNLTHSEPLAAFMARYGDRQQALTPW LRDFGPEDLRAWADALGTQTFVGTSGRVFPKDMKAAPLLRAWLQRLRGQGVQLHMRHRWMGWADALNGITPPVLRFAAPA GEVRVRARAVVLALGGGSWGRLGSDGTWAPLLAQRGVPVAPLAPSNCGFDVPRVDAPVGETRREFFLELIGRGAPAVGWT PHFVERFAGQPFKSVVLSFTDSQGRRFERRGEFVATATGVEGSLVYAVSSLLRDEIVAHGHATFHLDLLPDHTPERVLAE VRHPRGSRSLSTHLKSRLGLDGIKTAVLYEQLGKDGMSDPVALAHAIKALPITVVAARPLDEAISTAGGVAFEALDTRLM LRTMPGVFCAGEMLDWEAPTGGYLLTACYATGRAAGAGAAHWLATQA
Sequences:
>Translated_447_residues MMDTDLRSCEIAVIGAGPAGLMAAEAAAAAGLSVQVFDAMPSVGRKFLLAGRGGLNLTHSEPLAAFMARYGDRQQALTPW LRDFGPEDLRAWADALGTQTFVGTSGRVFPKDMKAAPLLRAWLQRLRGQGVQLHMRHRWMGWADALNGITPPVLRFAAPA GEVRVRARAVVLALGGGSWGRLGSDGTWAPLLAQRGVPVAPLAPSNCGFDVPRVDAPVGETRREFFLELIGRGAPAVGWT PHFVERFAGQPFKSVVLSFTDSQGRRFERRGEFVATATGVEGSLVYAVSSLLRDEIVAHGHATFHLDLLPDHTPERVLAE VRHPRGSRSLSTHLKSRLGLDGIKTAVLYEQLGKDGMSDPVALAHAIKALPITVVAARPLDEAISTAGGVAFEALDTRLM LRTMPGVFCAGEMLDWEAPTGGYLLTACYATGRAAGAGAAHWLATQA >Mature_447_residues MMDTDLRSCEIAVIGAGPAGLMAAEAAAAAGLSVQVFDAMPSVGRKFLLAGRGGLNLTHSEPLAAFMARYGDRQQALTPW LRDFGPEDLRAWADALGTQTFVGTSGRVFPKDMKAAPLLRAWLQRLRGQGVQLHMRHRWMGWADALNGITPPVLRFAAPA GEVRVRARAVVLALGGGSWGRLGSDGTWAPLLAQRGVPVAPLAPSNCGFDVPRVDAPVGETRREFFLELIGRGAPAVGWT PHFVERFAGQPFKSVVLSFTDSQGRRFERRGEFVATATGVEGSLVYAVSSLLRDEIVAHGHATFHLDLLPDHTPERVLAE VRHPRGSRSLSTHLKSRLGLDGIKTAVLYEQLGKDGMSDPVALAHAIKALPITVVAARPLDEAISTAGGVAFEALDTRLM LRTMPGVFCAGEMLDWEAPTGGYLLTACYATGRAAGAGAAHWLATQA
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 47675; Mature: 47675
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMDTDLRSCEIAVIGAGPAGLMAAEAAAAAGLSVQVFDAMPSVGRKFLLAGRGGLNLTHS CCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEHHCHHHCCEEEEECCCCCCCCCC EPLAAFMARYGDRQQALTPWLRDFGPEDLRAWADALGTQTFVGTSGRVFPKDMKAAPLLR CHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHH AWLQRLRGQGVQLHMRHRWMGWADALNGITPPVLRFAAPAGEVRVRARAVVLALGGGSWG HHHHHHCCCCEEEEEHHHHCCHHHHHCCCCHHHHHHCCCCCCEEEEEEEEEEEECCCCCC RLGSDGTWAPLLAQRGVPVAPLAPSNCGFDVPRVDAPVGETRREFFLELIGRGAPAVGWT CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC PHFVERFAGQPFKSVVLSFTDSQGRRFERRGEFVATATGVEGSLVYAVSSLLRDEIVAHG HHHHHHHCCCCHHHHHHHHCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC HATFHLDLLPDHTPERVLAEVRHPRGSRSLSTHLKSRLGLDGIKTAVLYEQLGKDGMSDP CEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH VALAHAIKALPITVVAARPLDEAISTAGGVAFEALDTRLMLRTMPGVFCAGEMLDWEAPT HHHHHHHHHCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCEECCCCCC GGYLLTACYATGRAAGAGAAHWLATQA CCEEEEEEHHCCCCCCCCHHHHHCCCC >Mature Secondary Structure MMDTDLRSCEIAVIGAGPAGLMAAEAAAAAGLSVQVFDAMPSVGRKFLLAGRGGLNLTHS CCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEHHCHHHCCEEEEECCCCCCCCCC EPLAAFMARYGDRQQALTPWLRDFGPEDLRAWADALGTQTFVGTSGRVFPKDMKAAPLLR CHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHH AWLQRLRGQGVQLHMRHRWMGWADALNGITPPVLRFAAPAGEVRVRARAVVLALGGGSWG HHHHHHCCCCEEEEEHHHHCCHHHHHCCCCHHHHHHCCCCCCEEEEEEEEEEEECCCCCC RLGSDGTWAPLLAQRGVPVAPLAPSNCGFDVPRVDAPVGETRREFFLELIGRGAPAVGWT CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC PHFVERFAGQPFKSVVLSFTDSQGRRFERRGEFVATATGVEGSLVYAVSSLLRDEIVAHG HHHHHHHCCCCHHHHHHHHCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC HATFHLDLLPDHTPERVLAEVRHPRGSRSLSTHLKSRLGLDGIKTAVLYEQLGKDGMSDP CEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH VALAHAIKALPITVVAARPLDEAISTAGGVAFEALDTRLMLRTMPGVFCAGEMLDWEAPT HHHHHHHHHCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCEECCCCCC GGYLLTACYATGRAAGAGAAHWLATQA CCEEEEEEHHCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]