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The map label for this gene is trbF [H]

Identifier: 222110524

GI number: 222110524

Start: 1383247

End: 1383951

Strand: Direct

Name: trbF [H]

Synonym: Dtpsy_1323

Alternate gene names: 222110524

Gene position: 1383247-1383951 (Clockwise)

Preceding gene: 222110523

Following gene: 222110525

Centisome position: 36.43

GC content: 67.52

Gene sequence:

>705_bases
ATGCGATTCAGAAAACCGCAGGTGCGCTATGCCGACACGCCGCACCCTGCCACGCCGTACCAAGCTGCCGGCCAGGTGTG
GGACGACCGTATCGGCTCACCGCGCGTGCAGGCGAAGAACTGGCGCCTGATGGCCCTCGGCTGCCTGACGCTCGCGCTGT
TGATGGCCGGTGGCCTGGTGTGGCGCTCGGCGCAGTCCATCGTGACGCCCTACGTCGTGGAAGTGGACAACGCGGGACAG
GTGCGCGCCGTGGGCGAAGCCGCCACGCCGTACCGGCCCAACGATGCACAGACGGCGCACCACATCGCGCGCTTCGTGAC
GCTGGTGCGCTCGCTGTCCATCGACCCCATCGTCGTCCGCCAGAACTGGCTCGACGCCTACGACTACACGACCGACAAGG
GCGCGGCCGTGCTCAACGACTACGCGCGGGTCAACGACCCGTTCGCGCGCATCGGCAAGGAGTCGGTGACGGTGCAGATC
ACCAGTGTCGTGCGCGCTAGCGATACGTCTTTCAACGTGCGCTGGACGGAACGCCGCTACGTCAACGGCGCCGCGGCTGG
CCTGGAGCGGTGGACGGCCGTGGTGTCCATCGTGCTCCAGCCGCCGCGCACCGAAGAACGCCTGCGCAAGAACCCCTTGG
GCATCTACGTCAACGGGCTGTCGTGGAGCCGCGAACTGGATGCGTCCGAAGGAGCCAAGCCATGA

Upstream 100 bases:

>100_bases
CGCCGCGCACACGCTGCGCGGTGGCGACGGTGGCGGCTCGGGGCAAGGCCCGAGCCTGCGCGGCTCCGACGACTAAAGCG
ATTTACAAGGAGAACTGACC

Downstream 100 bases:

>100_bases
ACCTGTCTTTCCGCTTTTACGCTTTTGTGCTGACCTTGGCGGCCCTGTCGGGCTGCGCCTCGCAGGGCAAGCCACCGCCA
CGCATCTCGCTCGATGAGCC

Product: conjugal transfer protein Trbf

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRFRKPQVRYADTPHPATPYQAAGQVWDDRIGSPRVQAKNWRLMALGCLTLALLMAGGLVWRSAQSIVTPYVVEVDNAGQ
VRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQI
TSVVRASDTSFNVRWTERRYVNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDASEGAKP

Sequences:

>Translated_234_residues
MRFRKPQVRYADTPHPATPYQAAGQVWDDRIGSPRVQAKNWRLMALGCLTLALLMAGGLVWRSAQSIVTPYVVEVDNAGQ
VRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQI
TSVVRASDTSFNVRWTERRYVNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDASEGAKP
>Mature_234_residues
MRFRKPQVRYADTPHPATPYQAAGQVWDDRIGSPRVQAKNWRLMALGCLTLALLMAGGLVWRSAQSIVTPYVVEVDNAGQ
VRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQI
TSVVRASDTSFNVRWTERRYVNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDASEGAKP

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26046; Mature: 26046

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFRKPQVRYADTPHPATPYQAAGQVWDDRIGSPRVQAKNWRLMALGCLTLALLMAGGLV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCEEEEHHHHHHHHHHHHCCHH
WRSAQSIVTPYVVEVDNAGQVRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVR
HHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQITSVVRASDTSFNVRWTERRY
CCCCCHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCEEEEEEEEEEECCCEEEEEECCHHH
VNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDASEGAKP
CCHHHHHHHHHHHHHHHEECCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFRKPQVRYADTPHPATPYQAAGQVWDDRIGSPRVQAKNWRLMALGCLTLALLMAGGLV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCEEEEHHHHHHHHHHHHCCHH
WRSAQSIVTPYVVEVDNAGQVRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVR
HHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQITSVVRASDTSFNVRWTERRY
CCCCCHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCEEEEEEEEEEECCCEEEEEECCHHH
VNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDASEGAKP
CCHHHHHHHHHHHHHHHEECCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]