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The map label for this gene is yubM [H]

Identifier: 222110480

GI number: 222110480

Start: 1336817

End: 1338886

Strand: Direct

Name: yubM [H]

Synonym: Dtpsy_1277

Alternate gene names: 222110480

Gene position: 1336817-1338886 (Clockwise)

Preceding gene: 222110479

Following gene: 222110481

Centisome position: 35.21

GC content: 67.54

Gene sequence:

>2070_bases
ATGAACGCCATGATTCAAACCGAAGCCCGCGCCGTCAACACCGCCGCCGCTGCCCCGCTGGAAGCCGCCGACCCGACCAA
GAACCTGATTCTGGTTCCGCTGTCGCGGCTGGTGCTGCGTCCGACGGGCCGCAACGTGCGCAAGGCCCCGCGCATGTCGA
TTCCCGAACTCGCCGCCAGCATCCAGCGTGTGGGCCTGCTGCAAAACCTGATCGTGATTGCATCCGCTGATGGCGAGCAT
TACGAAGTCGTCGCCGGTGGCCGTCGCCTTGCCGCGTTGAAGCTGCTGGCGAAGAAGCGCCGCATCAGCAAGGAATGGGA
GGTGCCTTGCCTGCTGGTAGCCGATGGCACCGCCCGCACCGCCAGCCTCACCGAGAACGTGCAGCGCGAAGCCATGCACC
CGGCAGACCAGTTTGAAGCGTTCGCGGCGCTGGTGGCCGAAGGCCGGCCCATCGAAGACATTGCTGCGGATTTTTCCGTC
ACGCCGCTGGTGGTGCAGCGCCGCTTGAAGCTGGCGAACGTCTCGCCACGCCTGATGGCGGACTACCGGGTCGATGCCGT
GAGCCTTGAACAGTTGATGGCCCTTGCCATCATCGACGACCACGCCGCGCAGGAAGCCGCGTTCTACGATGCGCCCCAAT
GGCAGCGCCAACCTTCCGCGCTGCGCGAACGCCTGACCGAGCGGGAAATCGACGCCTACCGGCATCCGCTGGTGCGCTTC
GTCGGGCTGGACACCTACGAGGCCGCAGGCGGTGGCGTGCGCCGCGACCTGTTCGCGGAAGGCAATGCGGGCGTGTATCT
GACCGACGCCGCGCTGCTGGAACGGCTGGCGCAAGACAGGCTGGCGGGCATTGCCGCCACAGTTCGCGCCGAGGGCTGGG
TATGGGTGGACGCCGCGCCCGGCGTGACCCATGCCGACCTGCACGCTTTCCAGCGTGCCCCGAGGGAGCGGCGCGAACCG
ACCAAGCGCGAAGCGCAGCGCATTGGGAAGCTGCAAGCCAAACTGAACGAACTGGCCGAAGCCGTGGATGCCGCGCTGGA
CGCCGAGGACGAGGACAAGGCCGACGCGCTGCAAGAGGAAGGCGAAGCCCTGGGCGAGCAGTTGCAGACGCTGGAAGATG
GCTTGCAGGACTACAGCCCGAACGTGAAGGCCGCAGCCGGTGCCATCGTCACCATCGACCGCAACGGCGAGGCCGTGATT
CATCGCGGGCTGATGCGCGAGGCCGAGGCCAAGGCGCTGCGCACGCTGGAAAGGTTGCGGCAGGGTTTCGGCGGCGAGGA
TACCGGGAACGACGACGAAGGCGAGGATGCCGACGACGCGCCCAAGGCCGCAGCCATGTCCGACCGGCTGGCGCAGCGCT
TGAGCACCCATCGCACGGCGGCGCTGCAGATCGAGGTGGCACGGCATCCGCAGGTCGCGCTGGCTGCGCTGGTGCATGGC
ATGGTGCAGAAGGTCTTGCAGGCTAGCCACTACGGGAATGACTTGCCGCTGGGCGTGCGCCTCACGGTGCAAGACCGGCT
GGAAGGTATGGCCCCGGACTGGCCGGAATCGCCTGCCGCCGTGGCGCTACGCGAATTGCAACAGGTGGCGGGCGAAGGCT
TGCCTGAGGACAACGCCGAACTGTTCGCCGCGCTACTGGCAAAGCCGCAAGACGAACTGGTCAAGCTGCTGGCCGTGTGC
GTGGCTTCCACGGTGGACGTGGTGACGCCTCGCGCCACGCCACGCCAGCCCGGCGCGGAATTGGTGCAGGCCGTGGGCCT
CGACATGGCCGCATGGTGGAAGCCGACCGCCGAGGGGTATTTCAAGCACGTTCCGAAGGCCACGATCCTGCAAGCCGTGG
GCGAGTACGCGCCCGAGCACGTCACCCGGCTGGCGAAGTTGAAGAAGGCCGACATTGCCAGCGAGGCCGAGCGGCTGGCC
GACAGCACGGGCTGGATGCCTGCCATCTTTAAGACCGAAGGCCCGCAGCAGGCAGTGCAGGAAAGCGCGCAAGAGGAAGG
CCCGGAGCAGGAGGCCCCGGACGATGCCGAAGCCGGGGCGGATGAACCCGCCGAGGCGCTGGCCGCTTGA

Upstream 100 bases:

>100_bases
TGCGCCAGTTGAAAGCCTGATTCCCCACACGGCAGGGGCAGGCAGCAGCCCTTGCCGTCTTTCTCGCCGCTGCATCCCCG
AACCGATAGGAGTTATCACC

Downstream 100 bases:

>100_bases
CCCACGCCGAATGCAAGCGCCTCGGCCTTGACCGGGGCGCTTCGCTGCAAGGAGAAGCCCCCATGACCCGCACCACCACA
AGCCGCCCGCGCATGGCAGC

Product: parb domain-containing protein nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 689; Mature: 689

Protein sequence:

>689_residues
MNAMIQTEARAVNTAAAAPLEAADPTKNLILVPLSRLVLRPTGRNVRKAPRMSIPELAASIQRVGLLQNLIVIASADGEH
YEVVAGGRRLAALKLLAKKRRISKEWEVPCLLVADGTARTASLTENVQREAMHPADQFEAFAALVAEGRPIEDIAADFSV
TPLVVQRRLKLANVSPRLMADYRVDAVSLEQLMALAIIDDHAAQEAAFYDAPQWQRQPSALRERLTEREIDAYRHPLVRF
VGLDTYEAAGGGVRRDLFAEGNAGVYLTDAALLERLAQDRLAGIAATVRAEGWVWVDAAPGVTHADLHAFQRAPRERREP
TKREAQRIGKLQAKLNELAEAVDAALDAEDEDKADALQEEGEALGEQLQTLEDGLQDYSPNVKAAAGAIVTIDRNGEAVI
HRGLMREAEAKALRTLERLRQGFGGEDTGNDDEGEDADDAPKAAAMSDRLAQRLSTHRTAALQIEVARHPQVALAALVHG
MVQKVLQASHYGNDLPLGVRLTVQDRLEGMAPDWPESPAAVALRELQQVAGEGLPEDNAELFAALLAKPQDELVKLLAVC
VASTVDVVTPRATPRQPGAELVQAVGLDMAAWWKPTAEGYFKHVPKATILQAVGEYAPEHVTRLAKLKKADIASEAERLA
DSTGWMPAIFKTEGPQQAVQESAQEEGPEQEAPDDAEAGADEPAEALAA

Sequences:

>Translated_689_residues
MNAMIQTEARAVNTAAAAPLEAADPTKNLILVPLSRLVLRPTGRNVRKAPRMSIPELAASIQRVGLLQNLIVIASADGEH
YEVVAGGRRLAALKLLAKKRRISKEWEVPCLLVADGTARTASLTENVQREAMHPADQFEAFAALVAEGRPIEDIAADFSV
TPLVVQRRLKLANVSPRLMADYRVDAVSLEQLMALAIIDDHAAQEAAFYDAPQWQRQPSALRERLTEREIDAYRHPLVRF
VGLDTYEAAGGGVRRDLFAEGNAGVYLTDAALLERLAQDRLAGIAATVRAEGWVWVDAAPGVTHADLHAFQRAPRERREP
TKREAQRIGKLQAKLNELAEAVDAALDAEDEDKADALQEEGEALGEQLQTLEDGLQDYSPNVKAAAGAIVTIDRNGEAVI
HRGLMREAEAKALRTLERLRQGFGGEDTGNDDEGEDADDAPKAAAMSDRLAQRLSTHRTAALQIEVARHPQVALAALVHG
MVQKVLQASHYGNDLPLGVRLTVQDRLEGMAPDWPESPAAVALRELQQVAGEGLPEDNAELFAALLAKPQDELVKLLAVC
VASTVDVVTPRATPRQPGAELVQAVGLDMAAWWKPTAEGYFKHVPKATILQAVGEYAPEHVTRLAKLKKADIASEAERLA
DSTGWMPAIFKTEGPQQAVQESAQEEGPEQEAPDDAEAGADEPAEALAA
>Mature_689_residues
MNAMIQTEARAVNTAAAAPLEAADPTKNLILVPLSRLVLRPTGRNVRKAPRMSIPELAASIQRVGLLQNLIVIASADGEH
YEVVAGGRRLAALKLLAKKRRISKEWEVPCLLVADGTARTASLTENVQREAMHPADQFEAFAALVAEGRPIEDIAADFSV
TPLVVQRRLKLANVSPRLMADYRVDAVSLEQLMALAIIDDHAAQEAAFYDAPQWQRQPSALRERLTEREIDAYRHPLVRF
VGLDTYEAAGGGVRRDLFAEGNAGVYLTDAALLERLAQDRLAGIAATVRAEGWVWVDAAPGVTHADLHAFQRAPRERREP
TKREAQRIGKLQAKLNELAEAVDAALDAEDEDKADALQEEGEALGEQLQTLEDGLQDYSPNVKAAAGAIVTIDRNGEAVI
HRGLMREAEAKALRTLERLRQGFGGEDTGNDDEGEDADDAPKAAAMSDRLAQRLSTHRTAALQIEVARHPQVALAALVHG
MVQKVLQASHYGNDLPLGVRLTVQDRLEGMAPDWPESPAAVALRELQQVAGEGLPEDNAELFAALLAKPQDELVKLLAVC
VASTVDVVTPRATPRQPGAELVQAVGLDMAAWWKPTAEGYFKHVPKATILQAVGEYAPEHVTRLAKLKKADIASEAERLA
DSTGWMPAIFKTEGPQQAVQESAQEEGPEQEAPDDAEAGADEPAEALAA

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 74481; Mature: 74481

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAMIQTEARAVNTAAAAPLEAADPTKNLILVPLSRLVLRPTGRNVRKAPRMSIPELAAS
CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHCCCCCCCHHHCCCCCHHHHHHH
IQRVGLLQNLIVIASADGEHYEVVAGGRRLAALKLLAKKRRISKEWEVPCLLVADGTART
HHHHHHHHHEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
ASLTENVQREAMHPADQFEAFAALVAEGRPIEDIAADFSVTPLVVQRRLKLANVSPRLMA
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
DYRVDAVSLEQLMALAIIDDHAAQEAAFYDAPQWQRQPSALRERLTEREIDAYRHPLVRF
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VGLDTYEAAGGGVRRDLFAEGNAGVYLTDAALLERLAQDRLAGIAATVRAEGWVWVDAAP
HCCCCHHCCCCCHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHEECCCEEEEECCC
GVTHADLHAFQRAPRERREPTKREAQRIGKLQAKLNELAEAVDAALDAEDEDKADALQEE
CCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
GEALGEQLQTLEDGLQDYSPNVKAAAGAIVTIDRNGEAVIHRGLMREAEAKALRTLERLR
HHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
QGFGGEDTGNDDEGEDADDAPKAAAMSDRLAQRLSTHRTAALQIEVARHPQVALAALVHG
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH
MVQKVLQASHYGNDLPLGVRLTVQDRLEGMAPDWPESPAAVALRELQQVAGEGLPEDNAE
HHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
LFAALLAKPQDELVKLLAVCVASTVDVVTPRATPRQPGAELVQAVGLDMAAWWKPTAEGY
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHCCCCHHHH
FKHVPKATILQAVGEYAPEHVTRLAKLKKADIASEAERLADSTGWMPAIFKTEGPQQAVQ
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHH
ESAQEEGPEQEAPDDAEAGADEPAEALAA
HHHHHCCCCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MNAMIQTEARAVNTAAAAPLEAADPTKNLILVPLSRLVLRPTGRNVRKAPRMSIPELAAS
CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHCCCCCCCHHHCCCCCHHHHHHH
IQRVGLLQNLIVIASADGEHYEVVAGGRRLAALKLLAKKRRISKEWEVPCLLVADGTART
HHHHHHHHHEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
ASLTENVQREAMHPADQFEAFAALVAEGRPIEDIAADFSVTPLVVQRRLKLANVSPRLMA
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
DYRVDAVSLEQLMALAIIDDHAAQEAAFYDAPQWQRQPSALRERLTEREIDAYRHPLVRF
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VGLDTYEAAGGGVRRDLFAEGNAGVYLTDAALLERLAQDRLAGIAATVRAEGWVWVDAAP
HCCCCHHCCCCCHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHEECCCEEEEECCC
GVTHADLHAFQRAPRERREPTKREAQRIGKLQAKLNELAEAVDAALDAEDEDKADALQEE
CCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
GEALGEQLQTLEDGLQDYSPNVKAAAGAIVTIDRNGEAVIHRGLMREAEAKALRTLERLR
HHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
QGFGGEDTGNDDEGEDADDAPKAAAMSDRLAQRLSTHRTAALQIEVARHPQVALAALVHG
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH
MVQKVLQASHYGNDLPLGVRLTVQDRLEGMAPDWPESPAAVALRELQQVAGEGLPEDNAE
HHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
LFAALLAKPQDELVKLLAVCVASTVDVVTPRATPRQPGAELVQAVGLDMAAWWKPTAEGY
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHCCCCHHHH
FKHVPKATILQAVGEYAPEHVTRLAKLKKADIASEAERLADSTGWMPAIFKTEGPQQAVQ
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHH
ESAQEEGPEQEAPDDAEAGADEPAEALAA
HHHHHCCCCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]