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The map label for this gene is ysgA [H]

Identifier: 222110441

GI number: 222110441

Start: 1300088

End: 1300870

Strand: Direct

Name: ysgA [H]

Synonym: Dtpsy_1238

Alternate gene names: 222110441

Gene position: 1300088-1300870 (Clockwise)

Preceding gene: 222110440

Following gene: 222110443

Centisome position: 34.24

GC content: 66.16

Gene sequence:

>783_bases
ATGCACGCCACGCCTGCTTTCATCCAATCGCGCGACAACGCACTGCTCAAGGAGTTGCGCCGCCTGTCGCAGGACAGTTC
CGCATACCGCAAGCAGGGCCGTGTGTGGCTGGAGGGAGATCATCTGTGCAGCGCCGCGCTGGCGCGTGGACAAAAGCCAG
CGATAGCGGTGTTTTCGGAGTCATTTTGGCCCCAAGCGCTCGCTGAATATGCGCGAGCAGCTACGAAAAATGTAGTGATC
GCTGATGTGCTCTGGAGTGACATCAGCGCTCTGGAATCTCCGGCGCCCATGGGTTTTGTGTTGCCGCTGCCTGAAGCGGA
GGGGTTGGACGGCAGGATGCCGACTGTCGTGCTCGATCGCCTGCAGGATGCGGGTAACGTGGGCTCCATCCTGCGCAGCG
CATCGGCATTCGGGTTCACGCAAGTGGCGGCGCTGAAAGGCACCGCAGCGCTCTGGAGTGGCAAGGTGCTGCGCGCGGGC
ATGGGCGCCCATTTCGCCCTGCGGCTGGTCGAGGGGTTGGCGCCCGCAGACATCGACCGGCTAGAGGTCCCGTTGCTGGC
AACCAGCTCGCACGAGGGCGACTTCCTCCATCGCGCAGCCTTGCCCTGGCCGTGTGGCTGGATCATGGGCCACGAAGGGC
AGGGCGTCTCGCCCGCCCTGCAGCAGCGTGCGCGGCGCCACATCCGCATTGCCCAGCCTGGGGGCGAGGAGTCGCTCAAC
GTGGGGGCCGCCGCGGCCATCTGCCTCCATGCCAGCGCTGCGGCGCGCGACTCGGCTGGCTGA

Upstream 100 bases:

>100_bases
GGCCTGTCCCCAGCACCGGCGCTCGTTCGCGCCGGTGGCGCGCGCCTTGCAGGCGCCCGTCGCCGCCTGAGTCTGATCGC
TATCCCCCTTTGCGTTTCCT

Downstream 100 bases:

>100_bases
GGCGTTCACGGGCCTGGCCGCGCGTCCGCCGGCGGTAGGGCGAATCGGTGGGAGAGCCTACTCAGTGCCCGCGAGACAGG
GCACATTGATGTCGCGCGCG

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MHATPAFIQSRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSESFWPQALAEYARAATKNVVI
ADVLWSDISALESPAPMGFVLPLPEAEGLDGRMPTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAG
MGAHFALRLVEGLAPADIDRLEVPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEESLN
VGAAAAICLHASAAARDSAG

Sequences:

>Translated_260_residues
MHATPAFIQSRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSESFWPQALAEYARAATKNVVI
ADVLWSDISALESPAPMGFVLPLPEAEGLDGRMPTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAG
MGAHFALRLVEGLAPADIDRLEVPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEESLN
VGAAAAICLHASAAARDSAG
>Mature_260_residues
MHATPAFIQSRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSESFWPQALAEYARAATKNVVI
ADVLWSDISALESPAPMGFVLPLPEAEGLDGRMPTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAG
MGAHFALRLVEGLAPADIDRLEVPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEESLN
VGAAAAICLHASAAARDSAG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=172, Percent_Identity=36.046511627907, Blast_Score=78, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27596; Mature: 27596

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHATPAFIQSRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSE
CCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEECC
SFWPQALAEYARAATKNVVIADVLWSDISALESPAPMGFVLPLPEAEGLDGRMPTVVLDR
CCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHH
LQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGAHFALRLVEGLAPADIDR
HHCCCCHHHHHHHHHHCCHHHHHHHHCHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCH
LEVPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEESLN
HCCCEEEECCCCCCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHCEEEECCCCCCCCC
VGAAAAICLHASAAARDSAG
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHATPAFIQSRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSE
CCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEECC
SFWPQALAEYARAATKNVVIADVLWSDISALESPAPMGFVLPLPEAEGLDGRMPTVVLDR
CCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHH
LQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGAHFALRLVEGLAPADIDR
HHCCCCHHHHHHHHHHCCHHHHHHHHCHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCH
LEVPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEESLN
HCCCEEEECCCCCCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHCEEEECCCCCCCCC
VGAAAAICLHASAAARDSAG
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]