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The map label for this gene is rbn [C]

Identifier: 222110332

GI number: 222110332

Start: 1172356

End: 1173645

Strand: Direct

Name: rbn [C]

Synonym: Dtpsy_1119

Alternate gene names: 222110332

Gene position: 1172356-1173645 (Clockwise)

Preceding gene: 222110326

Following gene: 222110335

Centisome position: 30.88

GC content: 70.16

Gene sequence:

>1290_bases
ATGTCGTTGTCCCTACAGTCCATTGCAGTGCGTGCCGAGGAGTGGCTGGTGGAGCTTTCCCACTTCCCCTGGCGCACCAC
CGCGCAGACGCTGCGCGAGCGCTTTCGCGAGGACCGCCTGGGGCTGACGGCCAGCAGCCTCACTTTCACCACGCTGCTGG
CGCTGGTGCCGTTCGTGACGGTGGCGCTGGCCATGTTCACCGTGTTCCCCATGTTTGCCGAGATGCAGCTCGTGCTGCAG
CGCTGGCTGGTGGACAGCCTGGTGCCCGACAGCATCTCGCGCCCCGTGCTGGGCTACCTCACGCAGTTCGCCGCCAAGGC
GCATGGCCTGGGCGCGGCGGGCTTGTCGATCCTCATGGTGACGGCGCTGGCGCTGATCCTCACCATCGACCGCACGCTCA
ACAACATCTGGCGCGTGCAGCGCCTGCGCCCGCTGGGCCAGCGTGTGCTGATCTACTGGGCCGCGCTCACGCTCGGTCCG
CTGGTGCTGGCGGCCAGCCTGGCGCTGACCACCTCGGTCGCCAGCGCCGCGTCGCGCGGTATCGGCGACACGTTGCCGGG
CGGAGCGCGCCTGCTGTTCGATGCGATCGAGTTCTTCGTGCTGGCCGCCGGCATGGCGGCGCTGTACCGCTATGTGCCCA
ACACCCAGGTGCACTGGCGCCACGCCTGGGCGGGCGGAGTGTTCGTCGCCGTGGGCATCGAGCTGGCCAAGAAAGTGCTG
TCGCTGTACCTGGCGTCGGTACCCACCTATTCGGTGCTGTACGGCACGTTCGCCACGCTGCCCATCTTGCTGCTGTGGGT
GTATGTGGCCTGGGTCATCGTGCTGCTGGGTGCGGTGGTGGCCGCCTATCTGCCGAGCCTGCTTGCCGGCGTGGCGCGCT
GCGCCACGGGCGAGGGCTGGGCCTTCTTGCTGGCCGTGGAGGTGCTGCAGCAGCTGCACCGCGCGCGCCAGCAACCGCCC
CACGGGCTGAGCGTGCTGGAGCTGGCCCAGCGGCTGCGCGTGGATGTGCTGCAGGTGGGGTCCGTGCTGCCGGTGCTGGC
GGCGCTGGATTGGGTGGTGCGGGTGGACGAGACGGCCGCCGACGGGTCCGACGCAGCCGACGCACGCTACGTGCTGCTGG
CCGAGCCGGCCACCACGCACATGGAGCCCCTGGTGCAGCGCCTGCTGCTGGCGCGCACCCCGCCGCTGGAGCGCCTGTGG
GCGCACACGGGGCTGGAGGTGCTCACGCTGGCCGACGTGCTGCCGCGCGAATCCGCGCAGCGGCCGCCTGAGATGCTCCT
TAAACGATAG

Upstream 100 bases:

>100_bases
CCACGGCCAGCCAGCGCGTGGCCGCCACGTCGGTGGCGATGTGCAGGGCGGGGGCGGGGGGCAGGGTTTCGCGATGCATG
GGGCTGGCATCATATCGGTC

Downstream 100 bases:

>100_bases
CTGTTAGCGCTTGATAGGTAAGCGCTAGAGGCTGCTTTGGCCTAAATCCTGCGCGGCCGCCGCGCCGTGCAGTACCGCGC
CCTCCAACGTGGCGGGGTAG

Product: ribonuclease bn

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSLSLQSIAVRAEEWLVELSHFPWRTTAQTLRERFREDRLGLTASSLTFTTLLALVPFVTVALAMFTVFPMFAEMQLVLQ
RWLVDSLVPDSISRPVLGYLTQFAAKAHGLGAAGLSILMVTALALILTIDRTLNNIWRVQRLRPLGQRVLIYWAALTLGP
LVLAASLALTTSVASAASRGIGDTLPGGARLLFDAIEFFVLAAGMAALYRYVPNTQVHWRHAWAGGVFVAVGIELAKKVL
SLYLASVPTYSVLYGTFATLPILLLWVYVAWVIVLLGAVVAAYLPSLLAGVARCATGEGWAFLLAVEVLQQLHRARQQPP
HGLSVLELAQRLRVDVLQVGSVLPVLAALDWVVRVDETAADGSDAADARYVLLAEPATTHMEPLVQRLLLARTPPLERLW
AHTGLEVLTLADVLPRESAQRPPEMLLKR

Sequences:

>Translated_429_residues
MSLSLQSIAVRAEEWLVELSHFPWRTTAQTLRERFREDRLGLTASSLTFTTLLALVPFVTVALAMFTVFPMFAEMQLVLQ
RWLVDSLVPDSISRPVLGYLTQFAAKAHGLGAAGLSILMVTALALILTIDRTLNNIWRVQRLRPLGQRVLIYWAALTLGP
LVLAASLALTTSVASAASRGIGDTLPGGARLLFDAIEFFVLAAGMAALYRYVPNTQVHWRHAWAGGVFVAVGIELAKKVL
SLYLASVPTYSVLYGTFATLPILLLWVYVAWVIVLLGAVVAAYLPSLLAGVARCATGEGWAFLLAVEVLQQLHRARQQPP
HGLSVLELAQRLRVDVLQVGSVLPVLAALDWVVRVDETAADGSDAADARYVLLAEPATTHMEPLVQRLLLARTPPLERLW
AHTGLEVLTLADVLPRESAQRPPEMLLKR
>Mature_428_residues
SLSLQSIAVRAEEWLVELSHFPWRTTAQTLRERFREDRLGLTASSLTFTTLLALVPFVTVALAMFTVFPMFAEMQLVLQR
WLVDSLVPDSISRPVLGYLTQFAAKAHGLGAAGLSILMVTALALILTIDRTLNNIWRVQRLRPLGQRVLIYWAALTLGPL
VLAASLALTTSVASAASRGIGDTLPGGARLLFDAIEFFVLAAGMAALYRYVPNTQVHWRHAWAGGVFVAVGIELAKKVLS
LYLASVPTYSVLYGTFATLPILLLWVYVAWVIVLLGAVVAAYLPSLLAGVARCATGEGWAFLLAVEVLQQLHRARQQPPH
GLSVLELAQRLRVDVLQVGSVLPVLAALDWVVRVDETAADGSDAADARYVLLAEPATTHMEPLVQRLLLARTPPLERLWA
HTGLEVLTLADVLPRESAQRPPEMLLKR

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=257, Percent_Identity=37.3540856031128, Blast_Score=153, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 46910; Mature: 46779

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSLQSIAVRAEEWLVELSHFPWRTTAQTLRERFREDRLGLTASSLTFTTLLALVPFVT
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VALAMFTVFPMFAEMQLVLQRWLVDSLVPDSISRPVLGYLTQFAAKAHGLGAAGLSILMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
TALALILTIDRTLNNIWRVQRLRPLGQRVLIYWAALTLGPLVLAASLALTTSVASAASRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IGDTLPGGARLLFDAIEFFVLAAGMAALYRYVPNTQVHWRHAWAGGVFVAVGIELAKKVL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCHHHHHHHHHHHHHHH
SLYLASVPTYSVLYGTFATLPILLLWVYVAWVIVLLGAVVAAYLPSLLAGVARCATGEGW
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AFLLAVEVLQQLHRARQQPPHGLSVLELAQRLRVDVLQVGSVLPVLAALDWVVRVDETAA
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGSDAADARYVLLAEPATTHMEPLVQRLLLARTPPLERLWAHTGLEVLTLADVLPRESAQ
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCC
RPPEMLLKR
CCHHHHHCC
>Mature Secondary Structure 
SLSLQSIAVRAEEWLVELSHFPWRTTAQTLRERFREDRLGLTASSLTFTTLLALVPFVT
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VALAMFTVFPMFAEMQLVLQRWLVDSLVPDSISRPVLGYLTQFAAKAHGLGAAGLSILMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
TALALILTIDRTLNNIWRVQRLRPLGQRVLIYWAALTLGPLVLAASLALTTSVASAASRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IGDTLPGGARLLFDAIEFFVLAAGMAALYRYVPNTQVHWRHAWAGGVFVAVGIELAKKVL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCHHHHHHHHHHHHHHH
SLYLASVPTYSVLYGTFATLPILLLWVYVAWVIVLLGAVVAAYLPSLLAGVARCATGEGW
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AFLLAVEVLQQLHRARQQPPHGLSVLELAQRLRVDVLQVGSVLPVLAALDWVVRVDETAA
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGSDAADARYVLLAEPATTHMEPLVQRLLLARTPPLERLWAHTGLEVLTLADVLPRESAQ
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCC
RPPEMLLKR
CCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA