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The map label for this gene is yhjC [C]

Identifier: 222110064

GI number: 222110064

Start: 876875

End: 877807

Strand: Direct

Name: yhjC [C]

Synonym: Dtpsy_0850

Alternate gene names: 222110064

Gene position: 876875-877807 (Clockwise)

Preceding gene: 222110062

Following gene: 222110065

Centisome position: 23.1

GC content: 61.41

Gene sequence:

>933_bases
ATGGATCGTTTCGACGCTATGGTGGCCTTTGCTCGCGTGGTAGAGACACGCAGCTTTACCCAGGCCGCTCAAACGCTGCA
CATGAGCAAAACTACGGTAACTCAGCTTGTGCAGCAGTTGGAAGCGCGTTTACGGGTCAGGCTTTTGAACCGCACCACCC
GCAAAGTGAACGTGACAGCCGAAGGTGCCGCCTATTACGAGCGTGTCGTGCGTCTGTTGGGCGACCTGGATGATGCGGAG
ACCAGTCTGACCAGTGCCTCAAGCGCGCCTCGAGGCCGCCTGCGGGTGGACGTGCCCAGCCCTCTGGCACGCATGGTCCT
TGTTCCGGCTTTTGCTGCATTCCATGCGCGCTATCCGGACATCCAGCTGCACATGGGTGTGAGTGACCGAGTGGTCGATC
TGATCGATGAAAACGTCGATTGCGTGGTGCGGGGAGGTGAGCCGGGCGACGCCTCGCTTGTGGCAAGGCATGTAGGCGAT
CTTTCCATGGGGCTGTATGCGGCACCTACATACTTGGCGAATGCCGGAATGCCCTTGCACCCCAAGAACCTGGAGGCCGC
ACCGCACCACATCGTGGGCTTTCTGGGATCAAGCACCGGACGCGTCTTGTCCTGCGTATTGCACCGCGGTGACGAACAAG
TGCGCGTGATGGGCCGTTACGCGATTGCCACCGACGATGGCAATGCCTACCTGGCGGCAGGCGTTGCCGGTCTGGGGGCG
CTCTGGTTGCCTCAGTACATGGCAGCGCCGCATCTGGCGCGGGGCGAACTGGCGCCGCTGTTTGAGGACTGGGCCATTGC
GCCGATGCCGCTGTATATCGCGTTTCCTCCCAACCGTCATGTGGGCGCTCGGCTGCGGGTGTTCATGGATTGGATGGTTG
AACTGATGAAGACGCATGCTCCGCTGTCCGGGGCGTATCCGCATCGGCGCTGA

Upstream 100 bases:

>100_bases
CATTGGTTAAAAGAATCCACTGTAGACACGGGATCTGTTCGGATAAACAGGAAAGTATCATCAACAGTGTTTGCAAAATC
CGGACAATCTCCTGACCTCG

Downstream 100 bases:

>100_bases
GAGGAGGGGCGTTGGACTGCGCCAGGGGATTGCGCCACCTGGCAGCCAACGGGTGCGGCGGCACGGCCTGCAGCTCACAG
CTTCTCTGGCCATAACGACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDRFDAMVAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVRLLNRTTRKVNVTAEGAAYYERVVRLLGDLDDAE
TSLTSASSAPRGRLRVDVPSPLARMVLVPAFAAFHARYPDIQLHMGVSDRVVDLIDENVDCVVRGGEPGDASLVARHVGD
LSMGLYAAPTYLANAGMPLHPKNLEAAPHHIVGFLGSSTGRVLSCVLHRGDEQVRVMGRYAIATDDGNAYLAAGVAGLGA
LWLPQYMAAPHLARGELAPLFEDWAIAPMPLYIAFPPNRHVGARLRVFMDWMVELMKTHAPLSGAYPHRR

Sequences:

>Translated_310_residues
MDRFDAMVAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVRLLNRTTRKVNVTAEGAAYYERVVRLLGDLDDAE
TSLTSASSAPRGRLRVDVPSPLARMVLVPAFAAFHARYPDIQLHMGVSDRVVDLIDENVDCVVRGGEPGDASLVARHVGD
LSMGLYAAPTYLANAGMPLHPKNLEAAPHHIVGFLGSSTGRVLSCVLHRGDEQVRVMGRYAIATDDGNAYLAAGVAGLGA
LWLPQYMAAPHLARGELAPLFEDWAIAPMPLYIAFPPNRHVGARLRVFMDWMVELMKTHAPLSGAYPHRR
>Mature_310_residues
MDRFDAMVAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVRLLNRTTRKVNVTAEGAAYYERVVRLLGDLDDAE
TSLTSASSAPRGRLRVDVPSPLARMVLVPAFAAFHARYPDIQLHMGVSDRVVDLIDENVDCVVRGGEPGDASLVARHVGD
LSMGLYAAPTYLANAGMPLHPKNLEAAPHHIVGFLGSSTGRVLSCVLHRGDEQVRVMGRYAIATDDGNAYLAAGVAGLGA
LWLPQYMAAPHLARGELAPLFEDWAIAPMPLYIAFPPNRHVGARLRVFMDWMVELMKTHAPLSGAYPHRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=305, Percent_Identity=31.4754098360656, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=31.864406779661, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1789639, Length=308, Percent_Identity=29.5454545454545, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=27.1777003484321, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=27.719298245614, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=27.0547945205479, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789440, Length=272, Percent_Identity=26.1029411764706, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786448, Length=294, Percent_Identity=23.1292517006803, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789173, Length=149, Percent_Identity=28.8590604026846, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=32.03125, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082132, Length=261, Percent_Identity=25.6704980842912, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33956; Mature: 33956

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFDAMVAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVRLLNRTTRKVNVTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
EGAAYYERVVRLLGDLDDAETSLTSASSAPRGRLRVDVPSPLARMVLVPAFAAFHARYPD
CHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCC
IQLHMGVSDRVVDLIDENVDCVVRGGEPGDASLVARHVGDLSMGLYAAPTYLANAGMPLH
EEEECCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHCCHHHCCHHHHCCCCCCC
PKNLEAAPHHIVGFLGSSTGRVLSCVLHRGDEQVRVMGRYAIATDDGNAYLAAGVAGLGA
CCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEHHHHHHHH
LWLPQYMAAPHLARGELAPLFEDWAIAPMPLYIAFPPNRHVGARLRVFMDWMVELMKTHA
HHHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
PLSGAYPHRR
CCCCCCCCCC
>Mature Secondary Structure
MDRFDAMVAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVRLLNRTTRKVNVTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
EGAAYYERVVRLLGDLDDAETSLTSASSAPRGRLRVDVPSPLARMVLVPAFAAFHARYPD
CHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCC
IQLHMGVSDRVVDLIDENVDCVVRGGEPGDASLVARHVGDLSMGLYAAPTYLANAGMPLH
EEEECCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHCCHHHCCHHHHCCCCCCC
PKNLEAAPHHIVGFLGSSTGRVLSCVLHRGDEQVRVMGRYAIATDDGNAYLAAGVAGLGA
CCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEHHHHHHHH
LWLPQYMAAPHLARGELAPLFEDWAIAPMPLYIAFPPNRHVGARLRVFMDWMVELMKTHA
HHHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
PLSGAYPHRR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]