| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222110058
Identifier: 222110058
GI number: 222110058
Start: 872141
End: 873331
Strand: Direct
Name: 222110058
Synonym: Dtpsy_0844
Alternate gene names: NA
Gene position: 872141-873331 (Clockwise)
Preceding gene: 222110057
Following gene: 222110060
Centisome position: 22.97
GC content: 63.98
Gene sequence:
>1191_bases ATGAGGCCCTTGCGCTCTCTGCGCCGCCAGCGCGGCTTTTTGTACCTTACTACTGGCGGCAACGGCACCGGCAAGACGCT GTTTACGCTCTATGACGTGCGCAAGCTCCAGCTGGAGACTGGTCGCCCGGTGTACTTTTCTGGCTTTGAGGCCAAGCAGC CGCTGCTGGATTTTGGGTGGCAACCCTTTGAGCCGGAGTGCTGGCAGGATCTGCCTGACGGGTCGATCTGCTTGGTGGAC GAGTGTCAGAAAGTCATGCCTGTGCGCGGCACCGGCAAGCCGCCGGAGTGGATTGCGGCTATCGCCGAGGTGCATCGCAA ACGCGGCTTTGACTTCTTCCTGATCACGCAACACCCGCTTAATTTCGATTCGTTCGTCCGTCGTCTGGTGGCCGCGCCTG GTTGGCACCGGCACTTCAAGGCGAGCTCCATGGGTGACAGCTCCAATGAGCTGAAATGGTCCTCGGTTAAGGACAACCCG CAGGTGGCCAATAGCTCGGCCATGGGCGAGGTGACATCCCGCGCGTTCCCTCGGGAGGTGTATGACTGGTACGCCTCGTC CAGCCTGCACACGGCGCGCAAGCGGATCCCGCTGAAGGTCTGGGGCGCCATCGCGGGCGTCATTGCGGCGTTCGGCATGG TCGGTTTCGCCGTGTGGCACTTCCTCGGCTACACCGGGGCGCCAGCGGCTGCTAAGCCGGCAGCTGCCCCGGAGGCGTCC GCGCTGTCAAAGATGCTGACCCCTGCTGCAGCGTCTGGTGTCGGTAGCTCGGAGCGGCAGCCGCTGACGGTGGCTGAGTA CGTCGAGCAGCGCAAGCCGCGCCTGCCTGGGTTCCCCAACACGGCCCCGGTGTATGACCAGGTCACGCAACCCGTCGAGG CTCCGTACCCTGCAGCCTGTGTCAAGATGGGCCAGCGTTGCGACTGCTATACCCAGCAAGCGACGCTGCTGCAGGTGGCT CACGACGTGTGCATGCAGATCGTCCAGCGCGGCTATTTCATGGATTGGAAACGTCCTACGACGGAGGCAGTCCGACAGCC GCGGCGCGACGAACCAGTGCGCCAGGCTGCGCCAGTGCAGTCGCCCGTGGTCATCAACATGCCTGCCCAGGCCCAGCAGG TCCAGCCAGTGTCTGAATGGTCACAAGGGCTCGCGGCGCGGAATGCTGAAGTGCGCTCCATGGTGCGCTAG
Upstream 100 bases:
>100_bases CGGGCGTGGGCGAGTTCGTCAGCATCGTGGCCTCCGGCCTGGCCGCGCGCCTGCTGCTCAACGGCCTGACCGATGGCAGC ATCAAGAAGTGGGTGATGAA
Downstream 100 bases:
>100_bases TCGGCGCGCAGGTCCTGGGCGTCTACGGTTTCCTTGACAAGTGCCCAGCGATAGCCGGCAGGGGCCGGCGGTCTTTCGTG GGTGCGGCGGTTGCCTCCGG
Product: zonular occludens toxin
Products: NA
Alternate protein names: Zonula Occludens xin Family Protein; Filamentous Phage Cf1c Related Protein; Phage Assembly Protein
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MRPLRSLRRQRGFLYLTTGGNGTGKTLFTLYDVRKLQLETGRPVYFSGFEAKQPLLDFGWQPFEPECWQDLPDGSICLVD ECQKVMPVRGTGKPPEWIAAIAEVHRKRGFDFFLITQHPLNFDSFVRRLVAAPGWHRHFKASSMGDSSNELKWSSVKDNP QVANSSAMGEVTSRAFPREVYDWYASSSLHTARKRIPLKVWGAIAGVIAAFGMVGFAVWHFLGYTGAPAAAKPAAAPEAS ALSKMLTPAAASGVGSSERQPLTVAEYVEQRKPRLPGFPNTAPVYDQVTQPVEAPYPAACVKMGQRCDCYTQQATLLQVA HDVCMQIVQRGYFMDWKRPTTEAVRQPRRDEPVRQAAPVQSPVVINMPAQAQQVQPVSEWSQGLAARNAEVRSMVR
Sequences:
>Translated_396_residues MRPLRSLRRQRGFLYLTTGGNGTGKTLFTLYDVRKLQLETGRPVYFSGFEAKQPLLDFGWQPFEPECWQDLPDGSICLVD ECQKVMPVRGTGKPPEWIAAIAEVHRKRGFDFFLITQHPLNFDSFVRRLVAAPGWHRHFKASSMGDSSNELKWSSVKDNP QVANSSAMGEVTSRAFPREVYDWYASSSLHTARKRIPLKVWGAIAGVIAAFGMVGFAVWHFLGYTGAPAAAKPAAAPEAS ALSKMLTPAAASGVGSSERQPLTVAEYVEQRKPRLPGFPNTAPVYDQVTQPVEAPYPAACVKMGQRCDCYTQQATLLQVA HDVCMQIVQRGYFMDWKRPTTEAVRQPRRDEPVRQAAPVQSPVVINMPAQAQQVQPVSEWSQGLAARNAEVRSMVR >Mature_396_residues MRPLRSLRRQRGFLYLTTGGNGTGKTLFTLYDVRKLQLETGRPVYFSGFEAKQPLLDFGWQPFEPECWQDLPDGSICLVD ECQKVMPVRGTGKPPEWIAAIAEVHRKRGFDFFLITQHPLNFDSFVRRLVAAPGWHRHFKASSMGDSSNELKWSSVKDNP QVANSSAMGEVTSRAFPREVYDWYASSSLHTARKRIPLKVWGAIAGVIAAFGMVGFAVWHFLGYTGAPAAAKPAAAPEAS ALSKMLTPAAASGVGSSERQPLTVAEYVEQRKPRLPGFPNTAPVYDQVTQPVEAPYPAACVKMGQRCDCYTQQATLLQVA HDVCMQIVQRGYFMDWKRPTTEAVRQPRRDEPVRQAAPVQSPVVINMPAQAQQVQPVSEWSQGLAARNAEVRSMVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44011; Mature: 44011
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPLRSLRRQRGFLYLTTGGNGTGKTLFTLYDVRKLQLETGRPVYFSGFEAKQPLLDFGW CCHHHHHHHHCCEEEEEECCCCCCCEEEEEHHHHHHHHCCCCEEEECCCCCCCCHHHCCC QPFEPECWQDLPDGSICLVDECQKVMPVRGTGKPPEWIAAIAEVHRKRGFDFFLITQHPL CCCCCHHHHCCCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC NFDSFVRRLVAAPGWHRHFKASSMGDSSNELKWSSVKDNPQVANSSAMGEVTSRAFPREV CHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCHHHH YDWYASSSLHTARKRIPLKVWGAIAGVIAAFGMVGFAVWHFLGYTGAPAAAKPAAAPEAS HHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH ALSKMLTPAAASGVGSSERQPLTVAEYVEQRKPRLPGFPNTAPVYDQVTQPVEAPYPAAC HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCHHH VKMGQRCDCYTQQATLLQVAHDVCMQIVQRGYFMDWKRPTTEAVRQPRRDEPVRQAAPVQ HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHCCCC SPVVINMPAQAQQVQPVSEWSQGLAARNAEVRSMVR CCEEEECCCHHHHCCCHHHHHHHHHHCCHHHHHHCC >Mature Secondary Structure MRPLRSLRRQRGFLYLTTGGNGTGKTLFTLYDVRKLQLETGRPVYFSGFEAKQPLLDFGW CCHHHHHHHHCCEEEEEECCCCCCCEEEEEHHHHHHHHCCCCEEEECCCCCCCCHHHCCC QPFEPECWQDLPDGSICLVDECQKVMPVRGTGKPPEWIAAIAEVHRKRGFDFFLITQHPL CCCCCHHHHCCCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC NFDSFVRRLVAAPGWHRHFKASSMGDSSNELKWSSVKDNPQVANSSAMGEVTSRAFPREV CHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCHHHH YDWYASSSLHTARKRIPLKVWGAIAGVIAAFGMVGFAVWHFLGYTGAPAAAKPAAAPEAS HHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH ALSKMLTPAAASGVGSSERQPLTVAEYVEQRKPRLPGFPNTAPVYDQVTQPVEAPYPAAC HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCHHH VKMGQRCDCYTQQATLLQVAHDVCMQIVQRGYFMDWKRPTTEAVRQPRRDEPVRQAAPVQ HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHCCCC SPVVINMPAQAQQVQPVSEWSQGLAARNAEVRSMVR CCEEEECCCHHHHCCCHHHHHHHHHHCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA