| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is ushA [C]
Identifier: 222109886
GI number: 222109886
Start: 695584
End: 697497
Strand: Direct
Name: ushA [C]
Synonym: Dtpsy_0670
Alternate gene names: 222109886
Gene position: 695584-697497 (Clockwise)
Preceding gene: 222109885
Following gene: 222109887
Centisome position: 18.32
GC content: 67.29
Gene sequence:
>1914_bases ATGGGTTCGTGGATGCAATGGGCCAACAAGCCCTACGGGCGGCGGGTGCGGATGGGCGCGGTGGCGCTGGCGGCGTGTGG CGTGCTGGCGGCATGCGGTGGCAACGATGACGACGAGGCCCAGCCGCTGGAACTGACCGTCCTGCACATCAACGACCACC ACTCCACGCTGGACGCCAAGTCCAAGACGCTGAAGCTGTCCACGGGCGGCGCCGCGCCTGTGGACGTGGCCGTCGAAGCC GGCGGCTTTGCGCGCGTCACCGCGGCCTTCGACAGCCTGGCCAAGGCCGCGGGCGCCAACGTGCTCAAGCTGCATGCGGG CGACGCGCTCACCGGCACGCTGTACTTCAACCGCGCGGGCGCGGACGGCGAGGCCGATGCCGCGCTGATGAACACCGTGT GCTTCGACGCCTTCACGCTGGGCAACCACGAGTTCGACAAGGGTGACGCGGGCCTCAAGGGATTCCTGGACCTGCTCAAG AAGGGGTCCTGCAAGACGGCGGTGCTCAGCGCCAACGTGAAGTTCGGTGCCGGCTCGGCGCTCAACGCCACCAAGGCACC CGGTTACGTGCAGCCTTCCACCGTGGTGGAGCGCAGCGGCCAGAAGATCGGCATCGTCGGCCTGACGATTGCGGGCAAGA CCAAGGCCTCGTCCAGCCCCGACGCGGACACCACCTTCGAGGACGAAGTCACGGCGGCGCAGCGTGAGATCGACAAGCTG CGCGCCCAGAGCATCAACAAGATCATCGTCATGAGCCACGTGGGCTATGGCTACGACAAGGAAATCGCCGCCAAGCTCAG CGGCGTGGACGTGATCGTGGGCGGCGATTCGCACACGCTGCTGGGCCCCGATGCGCTCAAGACCACGGGCGTGGGCACGC CCAGTGGCGCCTATCCCACGCGCGTGACCGACAAGGACGGCAAGAACGTCTGCGTGGTGCAGGCCTGGGAATACGCGCAG GTGGTGGGCGAGTTGAACGTGCGTTTTGACGGCAAGGGCGAGGTCACGCAGTGCAGTGGCACGCCGCATGTGCTGATCGG TAGCGACTTCACCATCAACAAATTGCCCCCGACCGATGCCGAAAAGAAGGCCATCGATGCCGACGTGGCGGCCAAGGGCT TTCTGCGCGTGACGCAGCCAGCCGCCGCCGCCACCACGGCGCTGCAGCCGTTCAAGGACCGCGTGGCCGTTTTCAACAAG ACCAACGTGGCGGTGGTGCCGAAGGAGTTGTGCTTCCGCCGCGTGCCGGGCAATCCCGGCTCGGGCGGCTCCAGCCCCAC GTGCAACGCCGAGGGCAGCGTGCATCTGCGCGGTGGCGACATCCAGCAGCTGGTGGCGCAGGCCTACGTGGACGAGGGCA ATGCCAAGTACGGCGGCGCCGACATCTCGCTGCAAAGCGGCGGTGGTGTGCGCATTGCGCTGGACGGCACGGTGACAGCA GCGCAGGTGATCCAGGTGCTGCCCTTCGGCAACATGCTGTTCCGTCTGGACGTGACCGGCGCGGAGGTCAAATCCATGCT CGAAGACGGTCTGGAGGCCGTGTTCAAGGCGGGCGGATCGACCGGGCCCTATCCCTATACCGGCGGCCTGCGCTTCGACG TGAACGCCTCGGCCGCCTTCGGCCAGCGCGCCTCCGGTCTCGAAGTGCGCAACGCCGCCACCGGCACCTGGGGGCCGATC GATCCGGCCAAGACCTACAGGCTCTTCGTGTTGAGTTTCAACGCCACGGGCGGCGACGGCTACAAGACGCTGGCGGCCGT GCCCGCGGCGCGGCGCCTGGATATCGGCGTGCTGGATGCCGATGTGTTCTTCAGCTACATCGACAAGCAGCCGCGTGACG CCGCCACCGGCCTGCCCATGCTGAACCGCCTGTCGCACGAGCTCTACAGCACCAAGAGCTTCGCGGGGCAGTGA
Upstream 100 bases:
>100_bases CGCGCCCTGTTCTACGGGCGCGCGTGTGGGGCTTTCACGGCGCTGTCATCCTTGCTTCCCACCATCTCCACTCTGTAACG ATTCAACAGGGAGCGAGAAC
Downstream 100 bases:
>100_bases CGGGACCAGTGAAGTGAACGGCGGGAATGCGCGGGCATACTGACGGTTTCCCGTCAACGAACCCCAGGAGTACCGCGCAT GACCGCCTTCACCCTCACCA
Product: 5'-nucleotidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 637; Mature: 636
Protein sequence:
>637_residues MGSWMQWANKPYGRRVRMGAVALAACGVLAACGGNDDDEAQPLELTVLHINDHHSTLDAKSKTLKLSTGGAAPVDVAVEA GGFARVTAAFDSLAKAAGANVLKLHAGDALTGTLYFNRAGADGEADAALMNTVCFDAFTLGNHEFDKGDAGLKGFLDLLK KGSCKTAVLSANVKFGAGSALNATKAPGYVQPSTVVERSGQKIGIVGLTIAGKTKASSSPDADTTFEDEVTAAQREIDKL RAQSINKIIVMSHVGYGYDKEIAAKLSGVDVIVGGDSHTLLGPDALKTTGVGTPSGAYPTRVTDKDGKNVCVVQAWEYAQ VVGELNVRFDGKGEVTQCSGTPHVLIGSDFTINKLPPTDAEKKAIDADVAAKGFLRVTQPAAAATTALQPFKDRVAVFNK TNVAVVPKELCFRRVPGNPGSGGSSPTCNAEGSVHLRGGDIQQLVAQAYVDEGNAKYGGADISLQSGGGVRIALDGTVTA AQVIQVLPFGNMLFRLDVTGAEVKSMLEDGLEAVFKAGGSTGPYPYTGGLRFDVNASAAFGQRASGLEVRNAATGTWGPI DPAKTYRLFVLSFNATGGDGYKTLAAVPAARRLDIGVLDADVFFSYIDKQPRDAATGLPMLNRLSHELYSTKSFAGQ
Sequences:
>Translated_637_residues MGSWMQWANKPYGRRVRMGAVALAACGVLAACGGNDDDEAQPLELTVLHINDHHSTLDAKSKTLKLSTGGAAPVDVAVEA GGFARVTAAFDSLAKAAGANVLKLHAGDALTGTLYFNRAGADGEADAALMNTVCFDAFTLGNHEFDKGDAGLKGFLDLLK KGSCKTAVLSANVKFGAGSALNATKAPGYVQPSTVVERSGQKIGIVGLTIAGKTKASSSPDADTTFEDEVTAAQREIDKL RAQSINKIIVMSHVGYGYDKEIAAKLSGVDVIVGGDSHTLLGPDALKTTGVGTPSGAYPTRVTDKDGKNVCVVQAWEYAQ VVGELNVRFDGKGEVTQCSGTPHVLIGSDFTINKLPPTDAEKKAIDADVAAKGFLRVTQPAAAATTALQPFKDRVAVFNK TNVAVVPKELCFRRVPGNPGSGGSSPTCNAEGSVHLRGGDIQQLVAQAYVDEGNAKYGGADISLQSGGGVRIALDGTVTA AQVIQVLPFGNMLFRLDVTGAEVKSMLEDGLEAVFKAGGSTGPYPYTGGLRFDVNASAAFGQRASGLEVRNAATGTWGPI DPAKTYRLFVLSFNATGGDGYKTLAAVPAARRLDIGVLDADVFFSYIDKQPRDAATGLPMLNRLSHELYSTKSFAGQ >Mature_636_residues GSWMQWANKPYGRRVRMGAVALAACGVLAACGGNDDDEAQPLELTVLHINDHHSTLDAKSKTLKLSTGGAAPVDVAVEAG GFARVTAAFDSLAKAAGANVLKLHAGDALTGTLYFNRAGADGEADAALMNTVCFDAFTLGNHEFDKGDAGLKGFLDLLKK GSCKTAVLSANVKFGAGSALNATKAPGYVQPSTVVERSGQKIGIVGLTIAGKTKASSSPDADTTFEDEVTAAQREIDKLR AQSINKIIVMSHVGYGYDKEIAAKLSGVDVIVGGDSHTLLGPDALKTTGVGTPSGAYPTRVTDKDGKNVCVVQAWEYAQV VGELNVRFDGKGEVTQCSGTPHVLIGSDFTINKLPPTDAEKKAIDADVAAKGFLRVTQPAAAATTALQPFKDRVAVFNKT NVAVVPKELCFRRVPGNPGSGGSSPTCNAEGSVHLRGGDIQQLVAQAYVDEGNAKYGGADISLQSGGGVRIALDGTVTAA QVIQVLPFGNMLFRLDVTGAEVKSMLEDGLEAVFKAGGSTGPYPYTGGLRFDVNASAAFGQRASGLEVRNAATGTWGPID PAKTYRLFVLSFNATGGDGYKTLAAVPAARRLDIGVLDADVFFSYIDKQPRDAATGLPMLNRLSHELYSTKSFAGQ
Specific function: Degradation Of External Udp-Glucose To Uridine Monophosphate And Glucose-1-Phosphate, Which Can Then Be Used By The Cell. [C]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Homo sapiens, GI4505467, Length=578, Percent_Identity=31.3148788927336, Blast_Score=198, Evalue=1e-50, Organism=Escherichia coli, GI1786687, Length=627, Percent_Identity=27.1132376395534, Blast_Score=132, Evalue=5e-32, Organism=Drosophila melanogaster, GI19922446, Length=578, Percent_Identity=29.9307958477509, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI24654424, Length=578, Percent_Identity=29.9307958477509, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI24641187, Length=587, Percent_Identity=29.3015332197615, Blast_Score=188, Evalue=1e-47, Organism=Drosophila melanogaster, GI19922444, Length=563, Percent_Identity=29.3072824156306, Blast_Score=178, Evalue=1e-44, Organism=Drosophila melanogaster, GI28573524, Length=556, Percent_Identity=29.4964028776978, Blast_Score=176, Evalue=6e-44, Organism=Drosophila melanogaster, GI221329836, Length=591, Percent_Identity=27.2419627749577, Blast_Score=174, Evalue=2e-43,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR004843 - InterPro: IPR006420 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.5 [H]
Molecular weight: Translated: 66228; Mature: 66097
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: PS00785 5_NUCLEOTIDASE_1 ; PS00786 5_NUCLEOTIDASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSWMQWANKPYGRRVRMGAVALAACGVLAACGGNDDDEAQPLELTVLHINDHHSTLDAK CCCHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCC SKTLKLSTGGAAPVDVAVEAGGFARVTAAFDSLAKAAGANVLKLHAGDALTGTLYFNRAG CCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEEECC ADGEADAALMNTVCFDAFTLGNHEFDKGDAGLKGFLDLLKKGSCKTAVLSANVKFGAGSA CCCCCHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECEEECCCCC LNATKAPGYVQPSTVVERSGQKIGIVGLTIAGKTKASSSPDADTTFEDEVTAAQREIDKL CCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH RAQSINKIIVMSHVGYGYDKEIAAKLSGVDVIVGGDSHTLLGPDALKTTGVGTPSGAYPT HHHCCCEEEEEEECCCCCCHHHHHHCCCEEEEECCCCCEEECCCHHHCCCCCCCCCCCCC RVTDKDGKNVCVVQAWEYAQVVGELNVRFDGKGEVTQCSGTPHVLIGSDFTINKLPPTDA EECCCCCCCEEEEECHHHHHHHHCEEEEECCCCCEEEECCCCEEEECCCEEECCCCCCCC EKKAIDADVAAKGFLRVTQPAAAATTALQPFKDRVAVFNKTNVAVVPKELCFRRVPGNPG HHHHCCHHHHCCCCEEECCCHHHHHHHHHHHHHHEEEEECCCEEEECHHHHHCCCCCCCC SGGSSPTCNAEGSVHLRGGDIQQLVAQAYVDEGNAKYGGADISLQSGGGVRIALDGTVTA CCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEECCEEEEEECCCCEEEEECCCHHH AQVIQVLPFGNMLFRLDVTGAEVKSMLEDGLEAVFKAGGSTGPYPYTGGLRFDVNASAAF HHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHC GQRASGLEVRNAATGTWGPIDPAKTYRLFVLSFNATGGDGYKTLAAVPAARRLDIGVLDA CCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHCCCCCCCEEEEECH DVFFSYIDKQPRDAATGLPMLNRLSHELYSTKSFAGQ HHHHHHHCCCCCCHHCCCHHHHHHHHHHHHCHHCCCC >Mature Secondary Structure GSWMQWANKPYGRRVRMGAVALAACGVLAACGGNDDDEAQPLELTVLHINDHHSTLDAK CCHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCC SKTLKLSTGGAAPVDVAVEAGGFARVTAAFDSLAKAAGANVLKLHAGDALTGTLYFNRAG CCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEEECC ADGEADAALMNTVCFDAFTLGNHEFDKGDAGLKGFLDLLKKGSCKTAVLSANVKFGAGSA CCCCCHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECEEECCCCC LNATKAPGYVQPSTVVERSGQKIGIVGLTIAGKTKASSSPDADTTFEDEVTAAQREIDKL CCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH RAQSINKIIVMSHVGYGYDKEIAAKLSGVDVIVGGDSHTLLGPDALKTTGVGTPSGAYPT HHHCCCEEEEEEECCCCCCHHHHHHCCCEEEEECCCCCEEECCCHHHCCCCCCCCCCCCC RVTDKDGKNVCVVQAWEYAQVVGELNVRFDGKGEVTQCSGTPHVLIGSDFTINKLPPTDA EECCCCCCCEEEEECHHHHHHHHCEEEEECCCCCEEEECCCCEEEECCCEEECCCCCCCC EKKAIDADVAAKGFLRVTQPAAAATTALQPFKDRVAVFNKTNVAVVPKELCFRRVPGNPG HHHHCCHHHHCCCCEEECCCHHHHHHHHHHHHHHEEEEECCCEEEECHHHHHCCCCCCCC SGGSSPTCNAEGSVHLRGGDIQQLVAQAYVDEGNAKYGGADISLQSGGGVRIALDGTVTA CCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEECCEEEEEECCCCEEEEECCCHHH AQVIQVLPFGNMLFRLDVTGAEVKSMLEDGLEAVFKAGGSTGPYPYTGGLRFDVNASAAF HHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHC GQRASGLEVRNAATGTWGPIDPAKTYRLFVLSFNATGGDGYKTLAAVPAARRLDIGVLDA CCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHCCCCCCCEEEEECH DVFFSYIDKQPRDAATGLPMLNRLSHELYSTKSFAGQ HHHHHHHCCCCCCHHCCCHHHHHHHHHHHHCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]