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The map label for this gene is atpD [H]

Identifier: 222109523

GI number: 222109523

Start: 311204

End: 312610

Strand: Direct

Name: atpD [H]

Synonym: Dtpsy_0303

Alternate gene names: 222109523

Gene position: 311204-312610 (Clockwise)

Preceding gene: 222109522

Following gene: 222109524

Centisome position: 8.2

GC content: 64.39

Gene sequence:

>1407_bases
ATGGCTCAAGTGCAAGGCAAGATTGTTCAATGTATCGGCGCCGTGGTGGACGTGGAGTTCCCGCGCGACCAGATGCCCAA
GGTGTATGACGCCCTGAAGCTCGAGGGCTCGCCCCTGACGCTGGAAGTGCAGCAGCAGCTGGGCGACGGCGTGGTGCGTA
CCATTGCGCTCGGTTCTTCGGACGGCCTCAAGCGTGGCCTGATGGTCACGAACACCGGCAACCCCATCACCGTGCCCGTG
GGCAAGGCCACGCTGGGCCGCATCATGGACGTGCTGGGCAACCCCATCGACGAGCGCGGCCCCGTGGACCAGAGCCTGAC
GGCTTCCATCCACCGCAAGGCCCCCGCTTATGACGAGCTGAGCCCTTCGCAGGAACTGCTCGAGACCGGCATCAAGGTGA
TCGACCTGGTGTGCCCGTTCGCCAAGGGCGGCAAGGTGGGTCTGTTCGGTGGTGCCGGCGTGGGCAAGACCGTGAACATG
ATGGAGCTCATCAACAACATCGCCAAGGCGCACTCGGGTCTGTCCGTGTTCGCTGGCGTGGGTGAGCGTACCCGTGAGGG
CAACGACTTCTACCACGAGATGGCCGACTCCGGCGTCGTGAATCTGGAGAACCTGGGCGAGTCCAAGGTGGCCATGGTCT
ACGGCCAGATGAACGAGCCCCCGGGCAACCGTCTGCGCGTGGCCCTGACCGGCCTGACCATCGCCGAGTCCTTCCGCGAC
GAAGGCCGCGACGTGCTGTTCTTCGTGGACAACATCTACCGTTACACGCTGGCCGGTACCGAAGTGTCCGCCCTGCTGGG
CCGGATGCCTTCCGCCGTGGGCTACCAGCCGACGCTGGCCGAGGAAATGGGCCGTCTGCAAGAGCGTATTACCTCGACCA
AGGTCGGGTCCATCACGTCCATTCAGGCCGTGTACGTGCCTGCTGACGACTTGACCGACCCGTCGCCTGCCACCACCTTC
GCCCACCTGGACTCCACCGTGGTGCTGTCGCGTGACATCGCCGCTCTGGGTATCTACCCTGCCGTGGACCCGCTGGACTC
CACCAGCCGCCAGCTGGACCCGCAGGTCGTGGGTGAAGAGCACTACCAAGTGGCCCGCCAAGTGCAGGGTACCCTGCAGC
GCTACAAGGAACTGCGCGACATCATCGCCATTCTGGGTATGGACGAGCTGGCCCCCGAGGACAAGCTTGTCGTGGCCCGT
GCCCGCAAGATCCAGCGTTTCCTGTCGCAGCCGTTCCACGTGGCCGAGGTGTTCACGGGCTCGCCTGGCAAGTACGTGCC
GCTGTCCGAGACCATCCGCGGCTTCAAGATGATCGTGGCTGGCGAATGCGACCACCTGCCCGAGCAGGCCTTCTACATGG
TTGGCACCATCGACGAAGCCTTCGAAAAGGCGAAGAAGGTGGCCTGA

Upstream 100 bases:

>100_bases
CCAAGCGGCGATCACGAAAGAACTTTCGGAGATCGTTGCAGGTGCCGCGGCAGTCTGACGCCGCCTTCGGGTCTCGGTTT
AAATTTTTGGAGCAAATCAA

Downstream 100 bases:

>100_bases
TGGTCCGAAGGCCGGCCCCGCGTCCGGCCCTCGTGAGCCCCACAGGCTTGCCATTCCCTTTTTCTAGGAGCAAAGATGAA
CACCATCCATGTTGATGTGG

Product: f0f1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MAQVQGKIVQCIGAVVDVEFPRDQMPKVYDALKLEGSPLTLEVQQQLGDGVVRTIALGSSDGLKRGLMVTNTGNPITVPV
GKATLGRIMDVLGNPIDERGPVDQSLTASIHRKAPAYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNM
MELINNIAKAHSGLSVFAGVGERTREGNDFYHEMADSGVVNLENLGESKVAMVYGQMNEPPGNRLRVALTGLTIAESFRD
EGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATTF
AHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGEEHYQVARQVQGTLQRYKELRDIIAILGMDELAPEDKLVVAR
ARKIQRFLSQPFHVAEVFTGSPGKYVPLSETIRGFKMIVAGECDHLPEQAFYMVGTIDEAFEKAKKVA

Sequences:

>Translated_468_residues
MAQVQGKIVQCIGAVVDVEFPRDQMPKVYDALKLEGSPLTLEVQQQLGDGVVRTIALGSSDGLKRGLMVTNTGNPITVPV
GKATLGRIMDVLGNPIDERGPVDQSLTASIHRKAPAYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNM
MELINNIAKAHSGLSVFAGVGERTREGNDFYHEMADSGVVNLENLGESKVAMVYGQMNEPPGNRLRVALTGLTIAESFRD
EGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATTF
AHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGEEHYQVARQVQGTLQRYKELRDIIAILGMDELAPEDKLVVAR
ARKIQRFLSQPFHVAEVFTGSPGKYVPLSETIRGFKMIVAGECDHLPEQAFYMVGTIDEAFEKAKKVA
>Mature_467_residues
AQVQGKIVQCIGAVVDVEFPRDQMPKVYDALKLEGSPLTLEVQQQLGDGVVRTIALGSSDGLKRGLMVTNTGNPITVPVG
KATLGRIMDVLGNPIDERGPVDQSLTASIHRKAPAYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM
ELINNIAKAHSGLSVFAGVGERTREGNDFYHEMADSGVVNLENLGESKVAMVYGQMNEPPGNRLRVALTGLTIAESFRDE
GRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATTFA
HLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGEEHYQVARQVQGTLQRYKELRDIIAILGMDELAPEDKLVVARA
RKIQRFLSQPFHVAEVFTGSPGKYVPLSETIRGFKMIVAGECDHLPEQAFYMVGTIDEAFEKAKKVA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=69.9570815450644, Blast_Score=654, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=310, Percent_Identity=28.3870967741935, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI50345984, Length=411, Percent_Identity=24.330900243309, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI4757810, Length=411, Percent_Identity=24.330900243309, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI19913428, Length=434, Percent_Identity=25.3456221198157, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI19913426, Length=409, Percent_Identity=25.1833740831296, Blast_Score=93, Evalue=6e-19,
Organism=Escherichia coli, GI1790170, Length=464, Percent_Identity=79.9568965517241, Blast_Score=746, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=312, Percent_Identity=31.4102564102564, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1790172, Length=347, Percent_Identity=25.0720461095101, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=470, Percent_Identity=68.2978723404255, Blast_Score=643, Evalue=0.0,
Organism=Caenorhabditis elegans, GI71988080, Length=406, Percent_Identity=24.1379310344828, Blast_Score=108, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=406, Percent_Identity=24.1379310344828, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17565854, Length=318, Percent_Identity=28.6163522012579, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=25.4901960784314, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17570191, Length=412, Percent_Identity=24.7572815533981, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=349, Percent_Identity=23.4957020057307, Blast_Score=84, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=459, Percent_Identity=67.1023965141612, Blast_Score=625, Evalue=1e-180,
Organism=Saccharomyces cerevisiae, GI6319370, Length=434, Percent_Identity=26.7281105990783, Blast_Score=122, Evalue=9e-29,
Organism=Saccharomyces cerevisiae, GI6319603, Length=417, Percent_Identity=26.1390887290168, Blast_Score=100, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=217, Percent_Identity=25.3456221198157, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24638766, Length=467, Percent_Identity=69.1648822269807, Blast_Score=647, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=468, Percent_Identity=64.7435897435898, Blast_Score=602, Evalue=1e-172,
Organism=Drosophila melanogaster, GI20129479, Length=319, Percent_Identity=28.8401253918495, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24583988, Length=334, Percent_Identity=26.9461077844311, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24583986, Length=334, Percent_Identity=26.9461077844311, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24583984, Length=334, Percent_Identity=26.9461077844311, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24658560, Length=407, Percent_Identity=24.5700245700246, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24583992, Length=320, Percent_Identity=26.5625, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI281361666, Length=405, Percent_Identity=25.679012345679, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24646341, Length=405, Percent_Identity=25.679012345679, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17136796, Length=405, Percent_Identity=25.679012345679, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=53.8461538461538, Blast_Score=87, Evalue=3e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50591; Mature: 50459

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQVQGKIVQCIGAVVDVEFPRDQMPKVYDALKLEGSPLTLEVQQQLGDGVVRTIALGSS
CCCCHHHHHHHHHHHHCCCCCCHHCCHHHHHHCCCCCCEEEEEHHHHCCCCEEEEEECCC
DGLKRGLMVTNTGNPITVPVGKATLGRIMDVLGNPIDERGPVDQSLTASIHRKAPAYDEL
CCCCCCEEEECCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC
SPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGV
CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCC
GERTREGNDFYHEMADSGVVNLENLGESKVAMVYGQMNEPPGNRLRVALTGLTIAESFRD
CCCCCCCCHHHHHHHCCCCEEHHHCCCCEEEEEEECCCCCCCCEEEEEEECHHHHHHHHH
EGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITS
CCCEEEEEEECHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGEE
EEEEEECCCCCCCCCCCCHHHHCCCEEEEECCHHHHCCCCCCCCCCCHHHHCCHHHCCHH
HYQVARQVQGTLQRYKELRDIIAILGMDELAPEDKLVVARARKIQRFLSQPFHVAEVFTG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEHEEEC
SPGKYVPLSETIRGFKMIVAGECDHLPEQAFYMVGTIDEAFEKAKKVA
CCCCCCCHHHHHHHEEEEEECCCCCCCHHHEEEEHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQVQGKIVQCIGAVVDVEFPRDQMPKVYDALKLEGSPLTLEVQQQLGDGVVRTIALGSS
CCCHHHHHHHHHHHHCCCCCCHHCCHHHHHHCCCCCCEEEEEHHHHCCCCEEEEEECCC
DGLKRGLMVTNTGNPITVPVGKATLGRIMDVLGNPIDERGPVDQSLTASIHRKAPAYDEL
CCCCCCEEEECCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC
SPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGV
CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCC
GERTREGNDFYHEMADSGVVNLENLGESKVAMVYGQMNEPPGNRLRVALTGLTIAESFRD
CCCCCCCCHHHHHHHCCCCEEHHHCCCCEEEEEEECCCCCCCCEEEEEEECHHHHHHHHH
EGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITS
CCCEEEEEEECHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQVVGEE
EEEEEECCCCCCCCCCCCHHHHCCCEEEEECCHHHHCCCCCCCCCCCHHHHCCHHHCCHH
HYQVARQVQGTLQRYKELRDIIAILGMDELAPEDKLVVARARKIQRFLSQPFHVAEVFTG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEHEEEC
SPGKYVPLSETIRGFKMIVAGECDHLPEQAFYMVGTIDEAFEKAKKVA
CCCCCCCHHHHHHHEEEEEECCCCCCCHHHEEEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA