| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222109509
Identifier: 222109509
GI number: 222109509
Start: 299916
End: 301154
Strand: Direct
Name: 222109509
Synonym: Dtpsy_0289
Alternate gene names: NA
Gene position: 299916-301154 (Clockwise)
Preceding gene: 222109508
Following gene: 222109510
Centisome position: 7.9
GC content: 70.06
Gene sequence:
>1239_bases ATGAGCGTGCTCACGCGGCGCACGGCCGTGGTCGTCTTCCTGGCCTTTGCGTTCACCTACTTCATCTCGGCGCTGTTGCG CGCGATCACCGCCACTCTGGCGCCCACACTGGAGGCCGAGTTCCAGTTGCACGCGCGCGACCTGGGGCTGCTGGCGGGTG GCTACTTCCTGGGTTTCTCGCTCACGCAACTGCCGCTGGGCCGGTGGCTGGATCGTCACGGCCCGCGCGTGGTGCTGCTG GGCTTTCTGGGCGTGGCGGTGGCGGGGTGCCTGGTGTTCTCCTGGGCCACGGGCTTCTCGGGGCTGCTTGCGGGGCGCAT GCTGTGCGGCGCGGGCGTCAGCGCCTGCCTGATGGCTCCGCTCACGGGATTCCGGCGCTGGCTGGAGCCTGGTGCGCAGC TGCGCGCCAACTCCTGGATGCTGATGACCGGTTCGCTGGGCATGGTGGCGTCCACTCTGCCGGTGCAGTGGCTGCTGCCA CTGGCAGGGTGGCGCCCGTTGTTCTGGGGGCTGGCGGCGCTCATCGTGCTGGCCATGGCGCTGCTGGCGCTGGGCGTGCC GCGCTGGCCGCAGGCGCCGGCAGAGTCGGGAGCAGGCGTAGAAACGGGCTATGCACAGGTGTGGCGCCATCCGTACTTCC TGCGCACGGCGCCGCTGGGCTTCTTCTGCTATGGCGGCATGGTCGCGGTGCAGACGCTGTGGGCCGCGCCCTGGATGCAG CACGTGGCCGGCTATACGCCGTTGCAGGCCGCCACCGGGCTGTTCTGGATCAATGTGAGCATGCTGATCACCTTCTGGAC CTGGGGCATGGCCAGCCCGTGGTTGCTGCGCCGCGTGGGCGGGGCCGACCCGGTAATGGCCGCGAGTTTGCCGCTGTCGC TGCTGGTGCTGGCGGGCATTGTGTTGGCGGGCGGACGTGCGGGCGCCGCGGCCTGGGCGCTGTATTGCGTGTCATGCACC AGCGTGGCTCTGTCGCAGCCCGCGGTGGCATTGGCGTTCCCGCAGGCGCTGGCGGGGCGCGCGCTGTCGGCGTACAACCT GGTGATCTTTGCGGGGGTGTTTGCCGTGCAATGGGGTATTGGCCTGGCGGTGGACGCGTTCGTGGCCGCCGGGCTGGACA TGGCGCGCGCCTACCGGGCCGCCATGGCGCTGCACCTGGCCTGCACGGCGGGGGCCTATGCATGGTTCATGGCGCGGCGC GGGCACGGTGATAATGCACTGCACTGCAGTACCCCATGA
Upstream 100 bases:
>100_bases AGGGCGGCCAGGCACGTCTGTACCACGCGGCGGTCTATGCGCCGCGTCGCACGACGGCCACGGCGGCTGACACCTTCTTC GCCAGCCTGGCGCTGCAGCC
Downstream 100 bases:
>100_bases ATACGCGCCTTCTCATCATCGCCCACGCCCCTTTGGCCCATGCGCTGCGTGAGTGCGCGCTGCACGTGTTCCCCGACTGC TGGCAGGAGGTGCTGGCGCT
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: Facilitator Superfamily Transporter; Facilitator Superfamily Protein; Carbohydrate Transport Membrane Protein; MFS Family Transporter; Facilitator Family Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MSVLTRRTAVVVFLAFAFTYFISALLRAITATLAPTLEAEFQLHARDLGLLAGGYFLGFSLTQLPLGRWLDRHGPRVVLL GFLGVAVAGCLVFSWATGFSGLLAGRMLCGAGVSACLMAPLTGFRRWLEPGAQLRANSWMLMTGSLGMVASTLPVQWLLP LAGWRPLFWGLAALIVLAMALLALGVPRWPQAPAESGAGVETGYAQVWRHPYFLRTAPLGFFCYGGMVAVQTLWAAPWMQ HVAGYTPLQAATGLFWINVSMLITFWTWGMASPWLLRRVGGADPVMAASLPLSLLVLAGIVLAGGRAGAAAWALYCVSCT SVALSQPAVALAFPQALAGRALSAYNLVIFAGVFAVQWGIGLAVDAFVAAGLDMARAYRAAMALHLACTAGAYAWFMARR GHGDNALHCSTP
Sequences:
>Translated_412_residues MSVLTRRTAVVVFLAFAFTYFISALLRAITATLAPTLEAEFQLHARDLGLLAGGYFLGFSLTQLPLGRWLDRHGPRVVLL GFLGVAVAGCLVFSWATGFSGLLAGRMLCGAGVSACLMAPLTGFRRWLEPGAQLRANSWMLMTGSLGMVASTLPVQWLLP LAGWRPLFWGLAALIVLAMALLALGVPRWPQAPAESGAGVETGYAQVWRHPYFLRTAPLGFFCYGGMVAVQTLWAAPWMQ HVAGYTPLQAATGLFWINVSMLITFWTWGMASPWLLRRVGGADPVMAASLPLSLLVLAGIVLAGGRAGAAAWALYCVSCT SVALSQPAVALAFPQALAGRALSAYNLVIFAGVFAVQWGIGLAVDAFVAAGLDMARAYRAAMALHLACTAGAYAWFMARR GHGDNALHCSTP >Mature_411_residues SVLTRRTAVVVFLAFAFTYFISALLRAITATLAPTLEAEFQLHARDLGLLAGGYFLGFSLTQLPLGRWLDRHGPRVVLLG FLGVAVAGCLVFSWATGFSGLLAGRMLCGAGVSACLMAPLTGFRRWLEPGAQLRANSWMLMTGSLGMVASTLPVQWLLPL AGWRPLFWGLAALIVLAMALLALGVPRWPQAPAESGAGVETGYAQVWRHPYFLRTAPLGFFCYGGMVAVQTLWAAPWMQH VAGYTPLQAATGLFWINVSMLITFWTWGMASPWLLRRVGGADPVMAASLPLSLLVLAGIVLAGGRAGAAAWALYCVSCTS VALSQPAVALAFPQALAGRALSAYNLVIFAGVFAVQWGIGLAVDAFVAAGLDMARAYRAAMALHLACTAGAYAWFMARRG HGDNALHCSTP
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43751; Mature: 43620
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVLTRRTAVVVFLAFAFTYFISALLRAITATLAPTLEAEFQLHARDLGLLAGGYFLGFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTQLPLGRWLDRHGPRVVLLGFLGVAVAGCLVFSWATGFSGLLAGRMLCGAGVSACLMAP HHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LTGFRRWLEPGAQLRANSWMLMTGSLGMVASTLPVQWLLPLAGWRPLFWGLAALIVLAMA HHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHH LLALGVPRWPQAPAESGAGVETGYAQVWRHPYFLRTAPLGFFCYGGMVAVQTLWAAPWMQ HHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH HVAGYTPLQAATGLFWINVSMLITFWTWGMASPWLLRRVGGADPVMAASLPLSLLVLAGI HHCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH VLAGGRAGAAAWALYCVSCTSVALSQPAVALAFPQALAGRALSAYNLVIFAGVFAVQWGI HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHCC GLAVDAFVAAGLDMARAYRAAMALHLACTAGAYAWFMARRGHGDNALHCSTP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC >Mature Secondary Structure SVLTRRTAVVVFLAFAFTYFISALLRAITATLAPTLEAEFQLHARDLGLLAGGYFLGFS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTQLPLGRWLDRHGPRVVLLGFLGVAVAGCLVFSWATGFSGLLAGRMLCGAGVSACLMAP HHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LTGFRRWLEPGAQLRANSWMLMTGSLGMVASTLPVQWLLPLAGWRPLFWGLAALIVLAMA HHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHH LLALGVPRWPQAPAESGAGVETGYAQVWRHPYFLRTAPLGFFCYGGMVAVQTLWAAPWMQ HHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH HVAGYTPLQAATGLFWINVSMLITFWTWGMASPWLLRRVGGADPVMAASLPLSLLVLAGI HHCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH VLAGGRAGAAAWALYCVSCTSVALSQPAVALAFPQALAGRALSAYNLVIFAGVFAVQWGI HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHCC GLAVDAFVAAGLDMARAYRAAMALHLACTAGAYAWFMARRGHGDNALHCSTP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA