Definition Acidovorax ebreus TPSY chromosome, complete genome.
Accession NC_011992
Length 3,796,573

Click here to switch to the map view.

The map label for this gene is yggG [H]

Identifier: 222109439

GI number: 222109439

Start: 238913

End: 239848

Strand: Direct

Name: yggG [H]

Synonym: Dtpsy_0218

Alternate gene names: 222109439

Gene position: 238913-239848 (Clockwise)

Preceding gene: 222109438

Following gene: 222109444

Centisome position: 6.29

GC content: 71.26

Gene sequence:

>936_bases
GTGGCGCTGTGCCTGCCCGCCTACATGCAGGCGGTGACGCGCGCCGCTAGACTGCTGCCCATGAACAGCCCCACCGTCTC
TGTGCCCCCGTTGCCCGTGGATGCGGGCTGCCGTTGCTGCGCCGCGCGGGGCGGCACCTGGCAGGCGCGCCGCGCCTTCG
TGCTGGCGGCGGCTGGTACGCTCGTGCTGCCGGCCGCGGCGCAGGTGGAGGTGGGGTCGGCCTCGGGCATGCGCCGGCTG
GTGCCGGCCGAGACGCTGGAGGACTCCGCTGTCCAGCAGTACAGCCAGCTACTGGCGCAGGCCAAGGCCAAGCGCGCACT
GGCGCCGGACAACCACCCCCAGTTGCTCAAGCTGCGCGCGATCGCGCGGCAGATCATTCCGTACGCCGCGCAGTGGAACA
GCCGCGCCGCGCAGTGGCGCTGGGAGGTCAACCTGATCGGCAGCAAGCAGATCAACGCCTTCTGCATGCCCGGCGGCAAG
ATCGCGTTCTACACGGGCATCCTGGACCAGCTCAAGCTGACCGACGACGAGATCGCCATGGTCATGGGCCATGAGATGGC
CCACGCGCTGCGCGAGCATGCGCGCTCGCGCGTGGCCAAGAGCCAGGCCACCAGCATCGGCCTGTCGCTGGGCGCGCAGC
TGCTGGGCCTGGGCGATCTGGGCAATGCAGCCGCCAACCTGGGGACGCAGCTGCTCACGCTCAAGTTCAGCCGCTCCGAC
GAGACCGACGCGGACCTGGTCGGCCTGGAGCTGGCCGCCCGCGCGGGCTACAACCCCCAGGCCGCCGTGAGCCTGTGGCG
CAAGATGGGCGAGGCCACGGGCAACGGCGGCATCGCGTTCCTGTCCACCCACCCGTCGGGGCCCGACCGCATCCGCGAGC
TGGAGCAGAACGTGCCCAAGGTGCAGGGGCTGTACCAGGCATCGCGGCGCGGTTAA

Upstream 100 bases:

>100_bases
GCGCAAGCGCCATCACAAGGAACAGAAGAAGGCATACAAGCGCTGGCGCCGCGAATGGGAAGACAACGACGATTGACCCG
GGCATGTTCCGGCTGCCATC

Downstream 100 bases:

>100_bases
TGCTATTAAAAATATAGCTGTTAGCGCTTATGGAATAAGCGCTGGAGCTTTTTTGATTCGGATTCTTTCCTGCGCCTGGG
CGCGGACCAGACGCTGTCCC

Product: peptidase m48 ste24p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGTLVLPAAAQVEVGSASGMRRL
VPAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRAIARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGK
IAFYTGILDQLKLTDDEIAMVMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSD
ETDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPKVQGLYQASRRG

Sequences:

>Translated_311_residues
MALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGTLVLPAAAQVEVGSASGMRRL
VPAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRAIARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGK
IAFYTGILDQLKLTDDEIAMVMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSD
ETDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPKVQGLYQASRRG
>Mature_310_residues
ALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGTLVLPAAAQVEVGSASGMRRLV
PAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRAIARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGKI
AFYTGILDQLKLTDDEIAMVMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSDE
TDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPKVQGLYQASRRG

Specific function: Seems to regulate the expression of speB [H]

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M48B family [H]

Homologues:

Organism=Escherichia coli, GI87082185, Length=224, Percent_Identity=26.3392857142857, Blast_Score=72, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6322940, Length=275, Percent_Identity=27.2727272727273, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33214; Mature: 33082

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGT
CCEEHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEECCCCCCCHHHHEEEEEECCC
LVLPAAAQVEVGSASGMRRLVPAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRA
EEECCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
IARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGKIAFYTGILDQLKLTDDEIAM
HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEECCCCCEEEHHHHHHHHHCCCHHHHH
VMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCC
ETDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPK
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCHH
VQGLYQASRRG
HHHHHHHHCCC
>Mature Secondary Structure 
ALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGT
CEEHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEECCCCCCCHHHHEEEEEECCC
LVLPAAAQVEVGSASGMRRLVPAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRA
EEECCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
IARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGKIAFYTGILDQLKLTDDEIAM
HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEECCCCCEEEHHHHHHHHHCCCHHHHH
VMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCC
ETDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPK
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCHH
VQGLYQASRRG
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2153656; 9278503; 1310091 [H]