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The map label for this gene is ycbB [H]

Identifier: 222109387

GI number: 222109387

Start: 187095

End: 188696

Strand: Direct

Name: ycbB [H]

Synonym: Dtpsy_0166

Alternate gene names: 222109387

Gene position: 187095-188696 (Clockwise)

Preceding gene: 222109386

Following gene: 222109388

Centisome position: 4.93

GC content: 71.79

Gene sequence:

>1602_bases
ATGAACCTGCGCCTGCTGACACACCACACTGCACCCCTGCTGCTGGCGGCCTGGATGCCGCTGGCTGCCTGGGCGAACCC
GTCCTGGCTGACGGCTGACGGGCGCCCCCTGCCGGCTGCGCATGAAGCGGTGCGCTGGCTCAACGAAGCCGCAGCCGATG
GGCTGGAGCCGGCCGACTATGGCGCGCAGCACCTGAGTGATGCGCTGGCGGCCGCAGCCGCCCGCGGCCTGGATGCCGCC
TCCGCCGTGGCGCTCGACCAGGAGCTGACGCAGGCCGTGGAGCGCTACCTGTATGAGCTGCACGGCGGGCGCATCGATCC
GGCACGGCTCAACGAGCGCTACGATCACTCCCGCCGCCCCCAGCCCGACCTGCGCGCCGCGCTGCAGACCGCGCTGGCCG
ACGGCCAGATCCAGCAGGCGCGGGACGCGGCCATCCCCCGCGTGCCCATGTACCCGGCGCTGCGCGCACTGCTGGCGCAT
TACCGCGCGCTGGGCGCTCACCCTGCCTGGGCGCAGCCGCTGCCCGCGCTGCCGGGCCGCAAGCTCACGCCGGGCCAGCC
CTGGGAGGGCCTGGGCGTGCTGGCCGAGCGGCTGGTGGCGCTGGGCGACCTGCCGCCGCAGCCCACGGGCGAGCCGCCCG
CAGCGTCCGCGCCAGCGCAATACACCCCCGTGTTGGTCGAGGCCGCCACGGCCTTCCAGCGCCGCCACGGGCTGGAGGCG
GACGGGGTGCTGGGCGCGACCACGCTGGCGGCGCTGAATGTGCCCCCGGCCGCACGCGCCGAGCAGATCGCGCTGCAGAT
GGAGCGTCTGCGCTGGACGCCCGTGCTGCAGGGCCCGCGCATGATCGCCGTGAACGTGCCCGAATACCGCCTGCGCGCCT
ATGAGTACGCGGGCGGCAGGATCACGCTGCGCCTGTCGATGGCGGTCATCGTCGGCAAGGCGCTGGATACGCGCACGCCG
CTGTTCGATGAGGACATGCAGTCCATCGAATTCAGCCCGTACTGGAACATCCCACCGTCCATCGCCCGCGGTGAAACCGT
GCCGCGCTTGCGCCGCGACCCGGGCTACCTGGCCCGGCAGGGCATGGAGTTCGTCAGCGCGGCGGGCGTGAGCACCGACA
CCACGCCCGAGATGCTGGGTGCCGTGGTGGCAGGCCAGGCGCGCATACGCCAGCGTCCGGGGCCGCTGAACGCGCTGGGC
GATATCAAGTTCGTGCTGCCCAACAACGACAACATCTACCTGCACCACACCTCGGCGCCCACGTTGTTCGGCCGCAGCCG
GCGCGACCTGAGCCACGGCTGCGTGCGTGTCGGGGAGCCGGTGGCGCTCGCCCAGTTCGTGTTGCAGGACGATCCCACCT
GGACCGTGGAGCGCATCCGTGCGGCCATGGCGCAGCCCAAGCCCGTGTTCGTACGGCTGCCGCATCCGGTGCCGGTCATC
ATCACGCACATCACCGTGGTGGTGCAGGACGGCCGTCCGCACTTCTATGGCGACCTGTACGGCCATGACCGCAAGCTCGC
CAGCCTGCTGCGCCAGCATTCGGCAAAACCCTACGATGCGGTCCGCGCGGGTAGTGCTGCCGGGGTGATCGGTCCAAAAT
AG

Upstream 100 bases:

>100_bases
CCCAGCGCAGCGGAGTGCCCCTGGCCGAGGTGGAGCGCGCGCTCGCTCCGAATCTGGGGCTTTAGCGCCTGGTTGGCGCA
GGCCATGCCAAGATCGACCC

Downstream 100 bases:

>100_bases
CGCGTTTTTTCGCTTTTTCGAGGTTTTTCGCGCATGGCTCCACCGCACAACCCCCACCGCCGTCTATTCCTGGGGCGCGG
CGCCGCCGTCGCGCACGCCG

Product: erfk/ybis/ycfs/ynhg family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MNLRLLTHHTAPLLLAAWMPLAAWANPSWLTADGRPLPAAHEAVRWLNEAAADGLEPADYGAQHLSDALAAAAARGLDAA
SAVALDQELTQAVERYLYELHGGRIDPARLNERYDHSRRPQPDLRAALQTALADGQIQQARDAAIPRVPMYPALRALLAH
YRALGAHPAWAQPLPALPGRKLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASAPAQYTPVLVEAATAFQRRHGLEA
DGVLGATTLAALNVPPAARAEQIALQMERLRWTPVLQGPRMIAVNVPEYRLRAYEYAGGRITLRLSMAVIVGKALDTRTP
LFDEDMQSIEFSPYWNIPPSIARGETVPRLRRDPGYLARQGMEFVSAAGVSTDTTPEMLGAVVAGQARIRQRPGPLNALG
DIKFVLPNNDNIYLHHTSAPTLFGRSRRDLSHGCVRVGEPVALAQFVLQDDPTWTVERIRAAMAQPKPVFVRLPHPVPVI
ITHITVVVQDGRPHFYGDLYGHDRKLASLLRQHSAKPYDAVRAGSAAGVIGPK

Sequences:

>Translated_533_residues
MNLRLLTHHTAPLLLAAWMPLAAWANPSWLTADGRPLPAAHEAVRWLNEAAADGLEPADYGAQHLSDALAAAAARGLDAA
SAVALDQELTQAVERYLYELHGGRIDPARLNERYDHSRRPQPDLRAALQTALADGQIQQARDAAIPRVPMYPALRALLAH
YRALGAHPAWAQPLPALPGRKLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASAPAQYTPVLVEAATAFQRRHGLEA
DGVLGATTLAALNVPPAARAEQIALQMERLRWTPVLQGPRMIAVNVPEYRLRAYEYAGGRITLRLSMAVIVGKALDTRTP
LFDEDMQSIEFSPYWNIPPSIARGETVPRLRRDPGYLARQGMEFVSAAGVSTDTTPEMLGAVVAGQARIRQRPGPLNALG
DIKFVLPNNDNIYLHHTSAPTLFGRSRRDLSHGCVRVGEPVALAQFVLQDDPTWTVERIRAAMAQPKPVFVRLPHPVPVI
ITHITVVVQDGRPHFYGDLYGHDRKLASLLRQHSAKPYDAVRAGSAAGVIGPK
>Mature_533_residues
MNLRLLTHHTAPLLLAAWMPLAAWANPSWLTADGRPLPAAHEAVRWLNEAAADGLEPADYGAQHLSDALAAAAARGLDAA
SAVALDQELTQAVERYLYELHGGRIDPARLNERYDHSRRPQPDLRAALQTALADGQIQQARDAAIPRVPMYPALRALLAH
YRALGAHPAWAQPLPALPGRKLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASAPAQYTPVLVEAATAFQRRHGLEA
DGVLGATTLAALNVPPAARAEQIALQMERLRWTPVLQGPRMIAVNVPEYRLRAYEYAGGRITLRLSMAVIVGKALDTRTP
LFDEDMQSIEFSPYWNIPPSIARGETVPRLRRDPGYLARQGMEFVSAAGVSTDTTPEMLGAVVAGQARIRQRPGPLNALG
DIKFVLPNNDNIYLHHTSAPTLFGRSRRDLSHGCVRVGEPVALAQFVLQDDPTWTVERIRAAMAQPKPVFVRLPHPVPVI
ITHITVVVQDGRPHFYGDLYGHDRKLASLLRQHSAKPYDAVRAGSAAGVIGPK

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=296, Percent_Identity=37.5, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 57885; Mature: 57885

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00104 EPSP_SYNTHASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRLLTHHTAPLLLAAWMPLAAWANPSWLTADGRPLPAAHEAVRWLNEAAADGLEPADY
CCCEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
GAQHLSDALAAAAARGLDAASAVALDQELTQAVERYLYELHGGRIDPARLNERYDHSRRP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
QPDLRAALQTALADGQIQQARDAAIPRVPMYPALRALLAHYRALGAHPAWAQPLPALPGR
CHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASAPAQYTPVLVEAATAFQRRHGLEA
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
DGVLGATTLAALNVPPAARAEQIALQMERLRWTPVLQGPRMIAVNVPEYRLRAYEYAGGR
CCCCCHHHHHEECCCCCHHHHHHHHHHHHHCCCEECCCCEEEEEECCHHHHHEEEECCCE
ITLRLSMAVIVGKALDTRTPLFDEDMQSIEFSPYWNIPPSIARGETVPRLRRDPGYLARQ
EEEEEEEHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHH
GMEFVSAAGVSTDTTPEMLGAVVAGQARIRQRPGPLNALGDIKFVLPNNDNIYLHHTSAP
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCC
TLFGRSRRDLSHGCVRVGEPVALAQFVLQDDPTWTVERIRAAMAQPKPVFVRLPHPVPVI
CHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCHHEE
ITHITVVVQDGRPHFYGDLYGHDRKLASLLRQHSAKPYDAVRAGSAAGVIGPK
EEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNLRLLTHHTAPLLLAAWMPLAAWANPSWLTADGRPLPAAHEAVRWLNEAAADGLEPADY
CCCEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
GAQHLSDALAAAAARGLDAASAVALDQELTQAVERYLYELHGGRIDPARLNERYDHSRRP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
QPDLRAALQTALADGQIQQARDAAIPRVPMYPALRALLAHYRALGAHPAWAQPLPALPGR
CHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASAPAQYTPVLVEAATAFQRRHGLEA
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
DGVLGATTLAALNVPPAARAEQIALQMERLRWTPVLQGPRMIAVNVPEYRLRAYEYAGGR
CCCCCHHHHHEECCCCCHHHHHHHHHHHHHCCCEECCCCEEEEEECCHHHHHEEEECCCE
ITLRLSMAVIVGKALDTRTPLFDEDMQSIEFSPYWNIPPSIARGETVPRLRRDPGYLARQ
EEEEEEEHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHH
GMEFVSAAGVSTDTTPEMLGAVVAGQARIRQRPGPLNALGDIKFVLPNNDNIYLHHTSAP
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCC
TLFGRSRRDLSHGCVRVGEPVALAQFVLQDDPTWTVERIRAAMAQPKPVFVRLPHPVPVI
CHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCHHEE
ITHITVVVQDGRPHFYGDLYGHDRKLASLLRQHSAKPYDAVRAGSAAGVIGPK
EEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]